Cell Culture
Fibroblasts from a 30 year old FRDA patient, obtained from Coriell Institute (Camden, NJ, USA) were maintained in Dulbecco's Modified Eagle Medium (DMEM; ThermoScientific, Waltham, MA, USA) with 10% charcoal-stripped fetal bovine serum (FBS; ThermoScientific), 1% GlutaMAX (ThermoScientific) and 1% penicillin-streptomycin (Invitrogen, Carlsbad, CA, USA) at 37°C, 5% CO2 and 90% humidity. Before vehicle or BSO treatment, FRDA fibroblast media was changed to phenol red- and sodium pyruvate-free DMEM (ThermoScientific) containing 1% penicillin-streptomycin. All experiments were conducted with FRDA cells from passage 14–21.
Chemicals & Reagents
17β-Estradiol (E2) was obtained from Steraloids, Inc. (Newport, RI, USA). L-buthionine (S,R)-sulfoximine (BSO) was acquired from Sigma-Aldrich (St Louis, MO, USA). ICI 182,780, 4,4′,4′-(4-Propyl-[1H]-pyrazole-1,3,5-triyl)trisphenol (PPT) and diarylpropionitrile (DPN) were purchased from Tocris Bioscience (Ellisville, MO, USA). ZYC-26 and ZYC-23 were synthesized in the Covey laboratory
[39]. Structures for these steroids were drawn using ChemDraw software (CambridgeSoft, Cambridge, MA), and are provided in .
Steroid Treatment
FRDA fibroblasts were plated in 24- or 96-well plates at a density of 3,000–35,000 cells per well in DMEM with 10% FBS, 1% GlutaMAX and 1% penicillin-streptomycin. After 24 hours the growth media was removed and replaced with the phenol red- and sodium pyruvate-free DMEM. The cells were then treated for 12–48 hours, depending on the assay, with either dimethyl sulfoxide vehicle control (DMSO; Sigma-Aldrich, St Louis, MO, USA) or 1 mM BSO in the presence of 100 nM E2, DPN, PPT, ZYC-26 or ZYC-23, concentrations of estrogen-like molecules which have been shown to be neuroprotective in various cell lines
[40] and cytoprotective in this FRDA fibroblast line
[29].
Calcein AM Cell Imaging
Cells were plated on a 96-well plate at a density of 5,000 cells per well, then treated with vehicle or 1 mM BSO. After 24, 36 and 48 hours of BSO treatment, the media was removed, and 1 µg/mL Calcein AM (CalBiochem, San Diego, CA, USA) in phosphate buffer pH 7.2 (PBS; Fisher Scientific, Pittsburg, PA, USA) was added to each well and the plate was incubated for 10 minutes at 37°C. The cells were then photographed using a Zeiss Axio Observer Z1 inverted microscope (Carl Zeiss MicroImaging, Thornwood, NY).
Lactate Dehydrogenase (LDH) Cell Viability Assay
After 48 hours of treatment 50 µL of media was removed from each well of the 96-well plate and placed in a separate 96-well plate. 100 µL of a solution consisting of 12 mL of 200 mM pH 8.2 Tris(hydroxymethyl)aminomethane hydrochloride (Sigma-Aldrich, St Louis, MO, USA) with 50 µL lactic acid and 4.2 mg iodonitrotetrazolium chloride (INT; Sigma-Aldrich, St Louis, MO, USA), 1.1 mg phenazine methosulphate (PMS; Sigma-Aldrich, St Louis, MO, USA) and 10.8 mg β-nicotinamide adenine dinucleotide hydrate (NAD; Sigma-Aldrich, St Louis, MO, USA) was added to each well. The absorbance of the resulting reaction was read with a Tecan Infinite M200 plate reader at 490 nm and recorded once the reaction is linear for greater than 2 minutes. Cell viability for each well (WellX) was determined by: 100−(100 * (WellX - media)/(0.1%TritonX100-media)). Measurements were then confirmed by visual inspection of the FRDA fibroblasts.
Western Blots
FRDA fibroblasts and 661W
[41],
[42] photoreceptor cells were grown in 10 cm plates until ~80% confluent. The cells were then removed from the plates using rubber cell scrapers and sonicated in RIPA lysis buffer. A Lowry assay was run to determine protein concentration for normalization and 20 µg of protein was loaded into each western blot well. ERα and ERβ were detected using ERα (H-184) rabbit polyclonal IgG antibody and ERβ (H-150) rabbit polyclonal IgG antibody, obtained from Santa Cruz Biotechnology (Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA). GAPDH (6C5) mouse monoclonal IgG antibody, also obtained from Santa Cruz Biotechnology, was used as a control to ensure equivalent loading of protein loaded into each well.
Lipid Peroxidation Assay
Cells were plated on 10 cm dishes and grown until ~80% confluent. The cells were then treated with DMSO vehicle control or BSO and 100 nM E2, PPT, DPN, ZYC-26 or ZYC-23 in phenol red- and sodium pyruvate-free DMEM for 24 hours. At the end of treatment, the FRDA fibroblasts were removed from the plates using a rubber cell scraper and treated according to the Cayman 8-Isoprostane EIA protocol (Cayman Chemical Company, Ann Arbor, MI). The resulting absorbance was read on a Tecan Infinite F200 plate reader (Tecan Systems, Inc., San Jose, CA) at 340 nm.
Aconitase Assay
Cells were plated in 10 cm dishes and grown until ~80% confluent. The cells were then treated with DMSO vehicle control or BSO and 100 nM E2, PPT, DPN, ZYC-26 or ZYC-23 in phenol red- and sodium pyruvate-free DMEM for 24 hours. At the end of treatment, the FRDA fibroblasts were removed from the plates using a rubber cell scraper and treated according to the Cayman protocol. The resulting absorbance was read on a Tecan Infinite F200 plate reader at 340 nm.
Mitochondrial Respiration Measurement
Human FRDA fibroblasts were plated in a 24-well Seahorse XF-24 assay plate at 35,000 cells/well and grown in FBS-containing DMEM media for 24 hours before being treated with either BSO or DMSO vehicle control and steroids for another 24 hours in FBS- and Phenol-red-free DMEM media. On the day of metabolic flux analysis, cells were changed to unbuffered DMEM media (DMEM base medium supplemented with 25 mM glucose, 10 mM sodium pyruvate, 31 mM NaCl, 2 mM GlutaMax, pH 7.4) and incubated at 37°C in a non-CO2 incubator for 1 hr. All media was adjusted to pH 7.4 on the day of assay. Eight baseline measurements of OCR and ECAR were taken before sequential injection of mitochondrial inhibitors, oligomycin (10 µM), FCCP (1 µM) and rotenone (5 µM). Four measurements were taken after each addition of mitochondrial inhibitor before injection of the next inhibitor. Oxygen consumption rate (OCR, an indicator of oxidative phosphorylation) and extracellular acidification rate (ECAR, an indicator of glycolysis) were automatically calculated and recorded by the Seahorse XF-24 software (Seahorse Bioscience, North Billerica, MA, USA).
ATP Assay
Cells were plated on 10 cm dishes and grown until ~80% confluent. The cells were then treated with DMSO vehicle control or BSO and 100 nM E2, PPT, DPN, ZYC-26 or ZYC-23 in phenol red- and sodium pyruvate-free DMEM for 24 hours. At the end of treatment, the FRDA fibroblasts were removed from the plates using a rubber cell scraper and treated according to the Abcam protocol (Abcam Inc., Cambridge, MA), then were read with an excitation of 535 nm and emission of 587 nm on a Tecan Infinite F200 plate reader.
Mitochondiral Membrane Potential (ΔΨm) Measurement
Cells were plated on 96-well plates at a density of 3,000 cells/well. The cells were then treated with DMSO vehicle control or BSO and 100 nM E2, PPT, DPN, ZYC-26 or ZYC-23 in phenol red- and sodium pyruvate-free DMEM for 36 hours. A fluorescence resonance energy transfer (FRET) assay was used in this study to measure mitochondrial membrane potential collapse. In this assay, nonyl acridine orange (NAO; Enzo Life Sciences Inc., Plymouth Meeting, PA, USA) was used to stain cardiolipin in the inner mitochondrial membrane. Tetramethylrhodamine, ethyl ester, perchlorate (TMRE; AnaSpec Inc., Fremont, CA, USA) was added simultaneously with NAO to the cell culture to quench the NAO fluorescent signal, and incubated for 20 minutes at 37°C in the dark. As mitochondrial membrane potential collapsed at 36 hours after BSO treatment, TMRE was released from the mitochondria, allowing the NAO fluorescent signature to be read with an excitation of 495 nm and an emission of 519 nm with a Tecan Infinite F200 plate reader
[43],
[44],
[45].
Glutathione Assay
Cells were plated on 10 cm dishes and grown until ~80% confluent. The cells were then treated with DMSO vehicle control or BSO and 100 nM E2, PPT, DPN, ZYC-26 or ZYC-23 in phenol red- and sodium pyruvate-free DMEM for 24 hours. At the end of treatment, the FRDA fibroblasts were removed from the plates using a rubber cell scraper and treated according to the Cayman protocol. The resulting absorbance was read on a Tecan Infinite F200 plate reader at 410 nm.
Data and Statistics
All data are displayed as mean ±1 standard deviation. These data were analyzed using ANOVA against an alpha level of 0.05. All graphs were made using GraphPad Prism 5. For all groups, n

=

8 wells and experiments were repeated three times to ensure consistency.
Institutional Review Board for Human Samples
All samples that are accepted into the Coriell Institute NIGMS Human Genetic Cell Repository are collected with informed consent according to the Guidelines from OHRP at the time of collection, including the GM04078 line of human FRDA skin fibroblasts used in this manuscript. In addition to the review of all human subject requirements at the time of submission by a committee of individuals trained in human subject protection from research risk, the activities of the NIGMS Human Genetic Repository are reviewed annually by the Institutional Review Board of the Coriell Institute for Medical Research, represented by Lorraine H. Toji, Ph.D., Vice Chair Coriell Institutional Review Board. When samples are submitted, they are given a Repository number and no links to the individual subject are maintained.