Development of human monoclonal antibodies 65C6, 100F4, and 3C11. A blood sample from a Chinese adult who had recovered from subclade 2.3.4 H5N1 infection (
50) was collected at 6 months postinfection. The plasma derived from the blood sample exhibited high neutralizing-antibody titers against both clade 1 and subclade 2.3.4 H5N1 viruses (P. Zhou et al., data not shown). Memory B cells isolated from patient PBMCs were immortalized with EBV in the presence of CpG as described by Traggiai et al. (
41). Culture supernatants were screened by HA and NA pseudotype-based neutralization (PN) assay as described before (
43). As stated in Materials and Methods, we did two independent EBV transformation experiments. In our first experiment we observed that neutralizing-antibody secretion by EBV-transformed cells was not stable. After more than two rounds of subcloning, neutralization activity in culture supernatants dramatically decreased. Therefore, in the second experiment, after one round of subcloning, total RNA was isolated and VH, Vκ, and Vλ gene segments were RT-PCR amplified with a panel of forward and reverse primers (see Table S2 in the supplemental material) and inserted into
Drosophila S2 cell expression vectors containing constant regions of human γ1, κ1, and λ1 gene segments (A). We then performed a pairwise, across-board cotransfection with heavy- and light-chain gene expression vectors into
Drosophila S2 cells to identify the heavy- and light-chain pairs required for the generation of neutralizing monoclonal antibodies. From approximately 16,000 EBV-transformed B cell supernatant samples, 6 supernatants exhibited at least 2-log
10 neutralization activity. From these positive wells, we isolated RNA, constructed heavy- and light-chain gene libraries, did across-board cotransfection into
Drosophila S2 cells, and eventually generated 3 stable
Drosophila S2 cell transfectant clones that secrete fully human monoclonal antibodies 65C6, 100F4, and 3C11 (see Materials and Methods for details). Among them, antibody 65C6 was generated from the first experiment, in which two rounds of subcloning were carried out, whereas antibodies 100F4 and 3C11 were generated from the second experiment, in which only one round of subcloning was carried out (see Materials and Methods). Stable
Drosophila S2 transfectants that secrete human monoclonal antibody TG15 specific for HIV-1 gp41 were also generated and used as a control. Using the Wave bioreactor system, stable
Drosophila S2 cell transfectant clones that secrete these human monoclonal antibodies were grown in perfusion culture. Culture supernatants were harvested, and the human monoclonal antibodies in these culture supernatants were purified. The amino acid sequences of the VH and the VL chains of antibodies 65C6, 100F4, and 3C11 are shown in Fig. S1 in the supplemental material. The VH chains of 65C6, 3C11, and 100F4 belong to 5-a*03, 5-a*03, and 4-61*03, respectively, and the VL chains of 65C6, 3C11, and 100F4 belong to Vκ3D-15*01, Vκ2D-28*01, and Vλ1-40*01, respectively. Compared to germ line sequences, the VH and the Vκ chains of antibody 65C6 contain 11 and 5 mutations, respectively, the VH and the Vκ chains of antibody 100F4 contain 12 and 7 mutations, respectively, and the VH and the Vλ chains of antibody 3C11 contain 14 and 4 mutations, respectively.
Binding specificity and affinity of antibodies 65C6, 100F4, and 3C11. To test the specific binding of human antibodies, HIV-1, HA, and NA virus-like particles (VLPs) were electrophoresed on a 10% SDS-polyacrylamide gel and transferred onto a PVDF membrane, and the binding of antibodies 65C6, 100F4, 3C11, and TG15 was measured by Western blot analysis. Mouse immune sera elicited with H5 HA plasmid DNA were used as a positive control. B shows that the TG15 control specifically binds to envelope protein derived from HIV-1 VLPs but not to those from influenza virus HA and NA VLPs, whereas mouse immune sera specifically bind to HA0, HA1, and HA2 of HA and NA VLPs but not to envelope protein from HIV-1 VLPs. Antibodies 65C6, 100F4, and 3C11 specifically bind HA0 and HA1 but not H5 HA2 or HIV-1 envelope proteins. Thus, all three antibodies 65C6, 100F4, and 3C11 recognize epitopes in the HA1 domain of HA.
To measure the affinity of the antibodies, surface plasmon resonance using recombinant H5 HA (A/Anhui/05/01, subclade 2.3.4) was performed. C shows the association and dissociation curves of antibodies 100F4, 65C6, and 3C11 at the indicated concentrations of HA. Based on these curves, the dissociation constant (KD) values of antibodies 100F4, 65C6, and 3C11 were calculated to be 2.42 × 10−9, 4.14 × 10−8, and 7.02 × 10−8 M, respectively (D).
Neutralization breadths and potencies of antibodies 65C6, 100F4, and 3C11. To determine the breadths and potencies of human antibodies 65C6, 100F4, and 3C11, they were titrated in a PN assay against a panel of 20 H5N1 and 1 H1N1 pseudotypes as well as a pseudotype expressing VSV-G (see Table S1 in the supplemental material). As shown in , the control antibody TG15 did not exhibit any neutralization activity against any of these H5N1 and H1N1 pseudotypes. Antibody 3C11 neutralized 16 H5N1 pseudotypes, with IC50s ranging from 0.018 μg/ml against A/Hong Kong/156/97 to 62.192 μg/ml against A/Goose/Shantou/1621/05, but neutralized only H5N1 pseudotypes derived from A/Hong Kong/156/97, A/Turkey/65-595/2006, A/Xingjiang/1/2006, and A/Beijing/01/2003, with IC95 values at 0.516, 4.04, 5.612, and 3.465 μg/ml, respectively ( and ). In contrast, except for A/Chicken/Vietnam/NCVD-016/08 (subclade 7.2), both antibodies 65C6 and 100F4 neutralized all clades and subclades of H5N1 pseudotypes tested with a higher degree of potency. Antibody 100F4 at <0.5 μg/ml neutralized 6 H5N1 pseudotypes with the IC95 and at <1 μg/ml neutralized 13 H5N1 pseudotypes with the IC95, while for the remaining 6 H5N1 pseudotypes between 1.022 and 8.122 μg/ml was required to reach the IC95 (). Most strikingly, although it had lower binding affinity to soluble HA than antibody 100F4 (D), antibody 65C6 exhibited higher neutralization activity than antibody 100F4. Antibody 65C6 at <0.5 μg/ml neutralized 16 H5N1 pseudotypes with the IC95 and at <1 μg/ml neutralized 17 H5N1 pseudotypes with the IC95, while for 2 H5N1 pseudotypes, derived from A/Thailand/KAN-1A/04 and A/Goose/Guiyang/337/06, 1.085 and 1.528 μg/ml were needed to reach the IC95 (). None of these three antibodies exhibited any neutralization activity against H1N1 and VSV-G pseudotypes ( and ).
| Table 1IC50s and IC95s of antibodies 65C6, 100F4, and 3C11 against a panel of H5N1 pseudotypesa |
To further test the breadth and potency of neutralization activity of 65C6, we performed hemagglutination inhibition (HI) assays against a panel of influenza A viruses, including H1N1, H2N2, H3N2, and H5N1. Again depending on the H5N1 strains, between 0.3 and 2.7 μg/ml of antibody 65C6 completely inhibited all 6 H5N1 viruses tested, while >170 μg/ml of antibody 65C6 still did not inhibit H1N1, H2N2, and H3N2 viruses, indicating that antibody 65C6 recognizes a conserved epitope on HAs from almost all clades and subclades of the H5 subtype and that this epitope is not shared by HAs of H1, H2, and H3 subtypes ().
| Table 2The concentrations of antibody 65C6 required to completely inhibit hemagglutination of 8 HA units of virus measured by HI assay |
Binding site of antibody 65C6. shows five representative images of HA-antibody 65C6 complexes obtained by negative-staining electron microscopy. HA protein was derived from autologous strain A/Shenzhen/406H/06 (subclade 2.3.4). A to C show that one antibody binds two individual HA molecules. Each Fab of the antibody binds near an end of HA and forms a constant angle of about 110° with HA. D shows that one antibody binds to two individual HA molecules in a five-HA aggregate “rosette.” In this complex, each Fab also binds near an end of HA and forms a constant angle of about 110° with HA. Since it is known that the “membrane anchor” regions of HA associate with each other in the absence of detergent to form “rosettes,” the binding site on the HA for the Fab is at the membrane-distal tip of HA.
Epitope mapping of antibody 65C6. To map the neutralization epitope of antibody 65C6, yeast display analysis was carried out at both the domain level and the fine-epitope level as described before (
52). To perform the domain-level epitope mapping, yeast (
Saccharomyces cerevisiae) cells that display a combinatorial library of H5 HA fragments were incubated with antibody 65C6, followed by FACS analysis and cell sorting. Sequencing analysis of HA fragments isolated from PE-positive yeast clones indicated that the 65C6 epitope resides within the HA fragment comprising amino acid residues 51 to 260 (T. Zuo et al., data not shown).
To perform the fine-epitope mapping, Saccharomyces cerevisiae cells that display a random mutagenesis library of the HA fragment comprising amino acid residues 51 to 260 were constructed and incubated with antibody 65C6, followed by FACS analysis and cell sorting. Sequencing analysis of HA fragments isolated from PE-negative (65C6-resistant) yeast clones identified 23 amino acid mutations that abolish the binding of 65C6 (A). Among them, 13 amino acid residues, at positions 116, 117, 118, 121, 147, 152, 160, 161, 162, 163, 164, 167, and 187 were on the surface of the HA molecule, while the remaining 10 residues were underneath the surface, suggesting that they are not directly contacted by antibody 65C6.
To test whether these 13 surface mutations of H5 HA would affect the neutralization activity of antibody 65C6, genes encoding 13 full-length H5 HA mutants derived from H5N1 strain A/Beijing/01/03 (subclade 7.1) were constructed and used to generate H5N1 pseudotypes. The susceptibility of H5N1 pseudotypes to neutralization by antibody 65C6 was determined by PN assay (see Fig. S3 in the supplemental material). Compared to the wild-type H5N1 pseudotype, H5N1 pseudotypes expressing H5 HA mutants with a mutation at position 116, 117, 147, 152, 160, 162, 163, or 187 were similarly or even more susceptible to neutralization by antibody 65C6, whereas H5N1 pseudotypes expressing H5 HA mutants with a mutation at position 118, 121, 161, 164, or 167 were more resistant to neutralization by antibody 65C6 (B). Interestingly all these resistant amino acid residues are adjacent to each other on the surface according to the three-dimensional (3D) structure of the HA model (C, D, and E).
Within amino acid stretches of residues 117 to 121 and 159 to 167 of H5 HA, there are 5 amino acid differences at positions 121, 159, 162, 163, and 165 between 65C6-susceptible strain A/Beijing/01/2003 (subclade 7.1) and 65C6-resistant strain A/Chicken/Vietnam/NCVD-016/08 (subclade 7.2). To determine the involvement of these residues in the neutralization epitope of antibody 65C6, we constructed 5 HA single mutants and one HA mutant with mutations in all 5 amino acid by replacing these amino acids from subclade 7.1 with those from subclade 7.2 and used them to generate H5N1 pseudotypes. F and G show the neutralization activities of antibody 65C6 against these H5N1 mutant pseudotypes. Compared to the subclade 7.1 wild-type H5N1 pseudotype, H5N1 mutant pseudotypes with single mutations at positions 159, 163, and 165 exhibited higher neutralization sensitivity. In contrast, the H5N1 mutant pseudotype with a single mutation at position of 121 was resistant (3.37-fold increases at the IC80) to 65C6 neutralization. Most strikingly, the H5N1 mutant pseudotype with all 5 amino acid mutations was much more resistant (26-fold increase at the IC80) to neutralization by antibody 65C6 than the H5N1 mutant pseudotype with a single mutation at position 121 (G).
Prophylactic efficacy of antibody 65C6. To determine whether the potent in vitro neutralization activity displayed by antibody 65C6 would be predictive of its prophylactic efficacy in vivo, female BALB/c mice were passively administrated (i.p.) 15, 5, and 1 mg/kg of antibody 65C6 or 15 mg/kg of control antibody TG15 and then challenged i.n. with 5 MLD50 of HPAI H5N1 A/Shenzhen/406H/06 and A/Cambodia/P0322095/05 viruses. A dose of 5 MLD50 was chosen to ensure 100% mortality in the control group. A shows the time course of body weight changes and B shows the survival rate of each group during 14 days after challenge with HPAI H5N1 A/Shenzhen/406H/06 virus. C shows the time course of body weight changes and D shows the survival rate of each group during 14 days after challenge with HPAI H5N1 A/Cambodia/P0322095/05 virus. In the group of mice that were inoculated with 15 mg/kg of control antibody TG15, severe sickness of mice became evident on day 3 after the challenge with H5N1 A/Shenzhen/406H/06, and all mice died. In contrast, in the group of mice that were inoculated with 1 mg/kg of antibody 65C6, all 5 mice got sick at 4 to 6 days postchallenge and 2 mice died, while the remaining 3 mice survived. In the group of mice that were inoculated with 5 mg/kg of antibody 65C6, mice got sick at 5 to 7 days postchallenge and 1 mouse died, while the remaining 4 mice survived. In the group of mice that were inoculated with 15 mg/kg of antibody 65C6, no mice became sick or lost weight, and all survived.
In the group of mice that were inoculated with 15 mg/kg of control antibody TG15, after the challenge with A/Cambodia/P0322095/05 virus, rates of sickness, weight loss, and death similar to those for mice infected with A/Shenzhen/406H/06 were observed. In the group of mice that were inoculated with 1 mg/kg of antibody 65C6, all 5 mice got sick and one mouse died, while the remaining 4 mice survived. In the groups of mice that were inoculated with 5 or 15 mg/kg of antibody 65C6, no mice became sick and all survived.
Therapeutic efficacy of antibody 65C6 in vivo. Having demonstrated potent prophylactic efficacy of antibody 65C6 in vivo, we next determined whether the potent in vitro neutralization activity displayed by 65C6 would be predictive of its therapeutic efficacy in vivo. To accomplish this, female BALB/c mice were inoculated i.n. with 5 MLD50 of HPAI H5N1 viruses A/Shenzhen/406H/06 and A/Cambodia/P0322095/05 and then injected i.p. with 40 mg/kg of antibody 65C6 or control antibody TG15 at 24, 48, and 72 h postinfection. A shows the time course of body weight changes and B shows the survival rate of each group during 14 days after challenge with HPAI H5N1 A/Shenzhen/406H/06 virus. C shows the time course of body weight changes and D shows the survival rate of each group during 14 days after challenge with HPAI H5N1 A/Cambodia/P0322095/05 virus. In the group of mice that were injected with 40 mg/kg of control antibody TG15 at 24 h after the infection, severe sickness, weight loss, and death similar to what was found in prophylactic studies were observed. In contrast, after injection with 40 mg/kg of antibody 65C6 at 24, 48, and 72 h postinfection, all mice infected with A/Cambodia/P0322095/05 survived with no weight loss (C and D), and except for one mouse that was injected with antibody at 72 h postinfection, all mice infected with A/Shenzhen/406H/06 also survived with no significant weight loss (A and B).