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Logo of nihpaAbout Author manuscriptsSubmit a manuscriptHHS Public Access; Author Manuscript; Accepted for publication in peer reviewed journal;
J Neurosci. Author manuscript; available in PMC 2012 April 26.
Published in final edited form as:
PMCID: PMC3224154

BDNF-induced Increase of PSD-95 in Dendritic Spines Requires Dynamic Microtubule Invasions


Microtubules (MTs) are capable of entering dendritic spines in mature hippocampal neurons through dynamic polymerization. Although these MT invasions are directly associated with neuronal activity, their function remains unknown. Here we demonstrate in mouse hippocampal neurons that MT entries into spines regulate the increase in post-synaptic density protein-95 (PSD-95) after brain-derived neurotrophic factor (BDNF) treatment. Using multi-wavelength total internal reflectance fluorescence microscopy (TIRFM) we show that BDNF prolonged the average MT dwell time in spines and this effect was dependent on TrkB receptor activation. Further examination revealed that peaks of MT polymerization into spines corresponded to rapid PSD-95 increases in the spine head. Over time, spines targeted by MTs after BDNF application, but not before, showed a robust increase in PSD-95. Conversely, spines completely devoid of MT invasions showed no significant change in the level of PSD-95. Pharmacological inhibition of MT dynamics abolished the BDNF-induced increase in PSD-95. Together these results support the hypothesis that the well known increase in PSD-95 within spines after BDNF treatment is dependent on MT invasions of dendritic spines. Thus, our study provides a direct link between dynamic MTs and the post-synaptic structure, and provides a functional role for MT invasion of dendritic spines.

Keywords: microtubule, dendritic spine, PSD-95, BDNF, hippocampal neuron


In mature cortical and hippocampal neurons MTs make rapid, infrequent excursions into dendritic spines through dynamic plus end polymerization and depolymerization (Gu et al., 2008; Hu et al., 2008; Jaworski et al., 2009). Furthermore, MT entries are promoted by neuronal depolarization (Hu et al., 2008) and pharmacological inhibition of MT dynamics blocks long-term BDNF-induced spine formation (Gu et al., 2008). These results indicate that MT entries into dendritic spines may play an important role during BDNF-induced synaptic plasticity. However, the mechanism that links BDNF-induced spine plasticity and MT invasions remains unknown.

The post-synaptic density scaffolding protein PSD-95 has been identified as a marker for synaptic strength. Overexpression of PSD-95 promotes synaptic maturation (El-Husseini et al., 2000) while knockdown of PSD-95 results in decreased synaptic strength and spine density (Ehrlich et al., 2007). PSD-95 remains mobile in mature neurons and can transit in and out of spines on the order of minutes (Marrs et al., 2001). A pool of dendritic PSD-95 molecules are shared and redistributed among neighboring spines through diffusion (Gray et al., 2006; Tsuriel et al., 2006). In visual cortical neurons BDNF can increase the size of PSD-95 puncta in spines and the overall amount of PSD-95 in dendrites within 60 minutes (Yoshii and Constantine-Paton, 2007). Thus, we hypothesized that BDNF increases the levels of PSD-95 in spines through regulation of dynamic MT invasions, and these invasions directly contribute to the accumulation of PSD-95.

To test this possibility we used total internal reflection fluorescence microscopy (TIRFM) to simultaneously monitor MT dynamics and PSD-95 levels in dendritic spines of mature hippocampal neurons. TIRFM allowed us to obtain high signal-to-noise fluorescence images at rapid intervals for long periods of time (Hu et al., 2008). TIRFM has also been shown to effectively capture changes in PSD-95 clusters by eliminating background signals from cytosolic PSD-95 molecules (Noritake et al., 2009). Here, we discovered that BDNF treatment increased the MT dwell time in dendritic spines. MT polymerization into spines also correlated with rapid increases of PSD-95 in the spine head. Within 20 minutes after BDNF treatment, only spines invaded by MTs showed a significant increase of PSD-95 levels, which was positively correlated with the probability that a MT was present in that spine. Moreover, pharmacological inhibition of MT dynamics effectively blocked the BDNF-induced increase in PSD-95. Together our results indicate that MTs directly contribute to post-synaptic structural changes by regulating the increase of PSD-95 in spines after BDNF treatment.


Plasmids and reagents

DsRed2 and EGFP-α-tubulin in pCAX vectors were described previously (Hu et al., 2008). Newly polymerized microtubules were stained with rat anti-tyrosinated tubulin at 1:1000 (YL1/2 clone, Millipore). Alexa-conjugated phalloidin (1:50) and Alexa-conjugated anti-rat secondary antibody (1:500) were from Invitrogen. BDNF was from Promega and K252a, nocodazole and taxol were from Sigma-Aldrich.

Cell Culture and Transfection

All mouse procedures were approved by the University of WisconsinCommittee on Animal Care and were in accordance with NIH guidelines. E15.5 hippocampal neuron cultures were prepared from Swiss Webster mice of either sex (Taconic)and transfected as described (Hu et al., 2008), with modifications (Viesselmann et al., 2011).

Live-cell TIRF Imaging and Immunocytochemistry

All imaging was performed at physiological temperatures (36–37oC) on a Nikon TE2000E microscope as described (Hu et al., 2008). Neurons were fixed and stained as described (Dent et al., 2007). Images of fixed neurons were collected in TIRFM at a resolution of 0.063 μm/pixel. All experiments were repeated with at least three individual primary cell cultures.

Quantification of Microtubule dynamics and levels of PSD-95

Dual-wavelength time-lapse images were acquired at 10-second intervals for 20 minutes before and after the addition of BDNF +/− MT drugs, generating image stacks of 241 frames. A maximum projection image of the tubulin channel was generated by overlaying a stack into one image (121 frames, before or after treatment). An average projection image of PSD-95 was created to depict the morphology of dendritic protrusions. Live-cell images were collected at a resolution of 0.126 μm/pixel. For clarity, PSD-95 is shown in red and tubulin is shown in green in all figures. MT invasions into spines were determined by examining the time-lapse movies frame by frame. Parameters of MT invasions into dendritic spines were measured by tracking the polymerizing/depolymerizing plus end of MTs in image stacks with Metamorph software (Molecular Devices) and calculated in Excel (Microsoft). MT invasion tracings were created by plotting the MT polymerization distance into spines (distance to origin) over time.

Kymographs of PSD-95 were generated by measuring the average fluorescence intensity within the width of 4-pixel wide line drawn across the long axis of the puncta. To measure PSD-95 levels, a region of interest was drawn around the entire PSD-95 puncta in the frame where it attained its largest area. The average fluorescence intensity (AFI) of PSD-95 within this region was measured at each time point. In Figure 3E, spine volume was calculated by averaging the AFI of DsRed over 1 minute (6 frames) at each time point. For the analysis in Figure 3F-I and Figure 4, PSD-95 level was calculated by taking the AFI over 1 minute. Only spines with a distinct PSD-95 punctum in the spine head were analyzed. Control spines included in Fig. 3F were chosen from the same dendritic segment as neighboring MT-targeted spines. The percent chance of a MT being present in spine (Fig. 3J) was determined by calculating the probabilities of finding a MT in all MT-targeted spines at each individual time point (241 time points in each 40-minute time lapse). Spines in different categories (Fig. 3F-I) generated different values of “% chance of MT in spine”. Time points with the same “% chance of MT in spine” value were grouped together. The percent change in PSD-95 of all spines at these time points were then compiled into each data point.

Figure 3
MT invasion of spines is correlated with BDNF-induced increase of PSD-95
Figure 4
BDNF-induced increase in PSD-95 is abolished by inhibition of MT dynamics

Statistics and graphing

All statistical tests were performed with Graph-Pad Prism. For each data set parametric or nonparametric statistical tests and post hoc tests were performed depending on the variance of the data sets. In all graphs p values are depicted as follows: * p<0.05, ** p<0.01, *** p<0.001. Graphs were compiled in Prism.


BDNF prolongs MT invasions into dendritic spines

Because BDNF increases PSD-95 in dendritic spines of visual cortical neurons (Yoshii and Constantine-Paton, 2007), we hypothesized that dynamic MT invasions into hippocampal dendritic spines could regulate the BDNF-induced increase of PSD-95. We first examined the effect of BDNF on the presence of endogenous MTs in dendritic spines by treating three week old hippocampal cultures with either 50ng/ml BDNF alone or BDNF with low concentrations of MT drugs for 20 minutes. We used either 10nM taxol or 100nM nocodazole to specifically inhibit MT dynamic instability, the rapid polymerization and depolymerization of MT plus ends (Dent and Kalil, 2001). After fixation, neurons were stained with an antibody against tyrosinated α-tubulin to label newly polymerized MTs, and phalloidin to label f-actin-rich dendritic spines (Fig. 1A-D). MTs were present in 0.8 ± 0.4% (all data presented are mean ± SEM) of spines under control condition (n=555 spines, 7 neurons), consistent with our previous study (Hu et al., 2008). Surprisingly, after BDNF treatment 3.8 ± 0.3% of spines contained MTs (n=768 spines, 9 neurons). The inclusion of either nocodazole or taxol abolished the increase of MTs in spines (Fig. 1C-E), resulting in 1.4 ± 0.3% of spines containing MTs (n=1030 spines, 9 neurons) for BDNF + nocodazole and 1.4 ± 0.4% for BDNF + taxol (n=769 spines, 8 neurons). These results indicate that BDNF markedly increases MT invasion of dendritic spines within 20 minutes, and these invasions are dependent on MT plus end dynamics.

Figure 1
BDNF treatment increases endogenous MT entry into spines

We then investigated the effects of BDNF on MT dynamics in live cells using TIRFM. With TIRFM we can image cultured hippocampal neurons at 10 second intervals for over 60 minutes without inducing photo-damage (Hu et al., 2008). Importantly, neurons were transfected before plating, which allowed them to mature while expressing both GFP-PSD-95 and mCherry-α-tubulin. After 2–3 weeks in culture, we selected only neurons that were expressing relatively low levels of fluorescent proteins (the middle 25–75% brightest neurons) to minimize overexpression artifacts and phototoxicity. In these studies we imaged labeled neurons for 20 minutes before and after the application of BDNF, resulting in a 40 minute time-lapse. Treatment with BDNF increased the time MTs remained in individual spines (average MT event length) from 108 ± 14 seconds to 257 ± 37 seconds (n=101 spines, 7 neurons) (Fig. 2A, D (upper panel), E). However, BDNF application did not increase the percent of spines invaded by MTs (before, 7.9 ± 1.4 %, after, 8.3 ± 1.5 %, n=1317 spines, 7 neurons) (Fig. 2A,C), or the frequency of MT invasion (before, 1.9 ± 0.2 events/20 min.; after, 1.9 ± 0.2 events/20 min. n=101 spines, 7 neurons) (Fig. 2F). To examine the temporal change in MT dynamics in spines we measured the percent of time during each five minute time period that MTs were present in the MT-targeted spines (n=101 spines) (Fig. 2G). Within 5 minutes of BDNF treatment, the percent of time that MTs were present in spines was significantly elevated compared to 5 minutes prior to BDNF application. This percentage peaked at 10–15 minutes after BDNF at a level twice that before BDNF application. These data demonstrate that BDNF treatment increases the percent of time MTs dwell in dendritic spines, resulting in a higher likelihood that MTs would be present in fixed dendritic spines (Fig. 1E).

Figure 2
Live-cell TIRFM shows increased MT invasions into spines treated with BDNF

To determine whether the BDNF receptor TrkB was responsible for BDNF-induced increase in MT dwell time, we pre-incubated neurons with the tyrosine kinase inhibitor K252a (200μM) for 24hrs to block TrkB activation. Time-lapse imaging revealed that K252a treated neurons had very few spines invaded by MTs either without (1.0 ± 1.0%) or with (0.8 ± 0.8%) BDNF treatment (n=501 spines, 4 neurons) (Fig. 2B,C), both conditions being significantly different than controls (Fig. 2C). In the handful of spines that contained MTs, MT invasions were scarce and transient (Fig. 2D, lower panel). Thus, intrinsic signaling through the TrkB receptor is essential for basal levels of dynamic MT invasions into dendritic spines.

MT dynamics directly regulate the BDNF-induced increase in PSD-95

To study the possible correlation between MT entries and changes in PSD-95 after BDNF, we monitored MT dynamics and PSD-95 levels simultaneously in individual spines that contained a distinct PSD-95 punctum in the spine head. MT invasions correlate with “hotspots” of elevated PSD-95 levels (Fig. 3A,A’) which may or may not persist following MT invasion (Fig. 3A’-C). Since MTs function as a major route of transport for a variety of intracellular cargoes in all cells, we asked whether PSD-95 is directly transported on MTs during MT entries. We examined 982 individual spines during time-lapse imaging (total imaging time = 4hrs) and found only one case in which MT invasion accompanied the movement of a PSD-95 punctum into a spine head (Fig. 3D’), followed by a subsequent increase in PSD-95 intensity in that spine head (Fig. 3D). We also documented four cases of a PSD-95 punctum moving into a spine when no MT was present (data not shown). Thus, although MT entries into spines correlated with increases in PSD-95, MTs rarely served as the direct conduit for PSD-95 transport into spines.

To better characterize the correlation between MT polymerization into spines and changes in PSD-95, we measured the average fluorescence intensity of PSD-95 in spine heads by drawing a region of interest (ROI) that included the entire PSD-95 punctum. We found that at the peak of each MT invasion, the PSD-95 level within the ROI increased by 3.0 ± 0.4% compared to the average of 1 minute prior to this time point (n=206 MT entries, 87 spines, 5 neurons). Conversely, in dendritic protrusions that did not contain a distinct PSD-95 punctum (immature spines), levels of PSD-95 remained unchanged at the peak of MT invasion (data not shown). Thus, MT invasions (red channel) do not cause bleed-through fluorescence into the PSD-95 (green) channel.

To test the hypothesis that MT invasions are responsible for the accumulation of PSD-95, we measured the PSD-95 level in spines over a one minute interval at three time points during the 40 minute time-lapse; the start of control time period, just before and 20 minutes after BDNF addition. We measured DsRed2 intensity (as a volume marker) in spines but found no spine enlargement 20-minutes after BDNF treatment in MT-targeted spines, as well as the general population of spines (Fig. 3E). We then compared the level of PSD-95 (normalized to the start time point) over time in spines with different dynamic MT profiles. Surprisingly, we found no significant change in PSD-95 level in spines devoid of MTs before or after BDNF addition (Fig. 3F) (−1.5 ± 1.6% before, −1.4 ± 2.0% after, n=68 spines, 7 neurons), as well as spines that were invaded by MTs before but not after BDNF (Fig. 3G) ( −2.0 ± 3.9% before, −6.3 ± 3.2% after, n=12 spines, 7 neurons). However, the level of PSD-95 increased significantly in spines invaded by MTs both before and after BDNF (Fig. 3H) (−0.3 ± 1.3% before, 11.5 ± 3.2% after, n=31 spines, 7 neurons). Interestingly, PSD-95 exhibited the most robust increase in spines invaded by MTs only after BDNF treatment (Fig. 3I) (1.9 ± 2.8% before, 21.6 ± 3.7% after, n=19 spines, 7 neurons). The increase in PSD-95 in this particular group of spines (Fig. 3I) was significantly higher than in all of the other three groups (Fig. 3G-I) (Two-way ANOVA with Bonferroni post-tests, p<0.01). No significant change in PSD-95 was detected during the control time period among all four groups of spines (Two-way ANOVA with Bonferroni post-tests, p>0.05). Together these data indicate that MT entries that occur after BDNF application correlate with the accumulation of PSD-95. To further test if the likelihood of MT invasion in a spine scales with the percentage change in PSD-95, we plotted the data for each of the different MT invasion scenarios mentioned above (Fig. 3F-I) and discovered that only when MT entry occurred after BDNF application (Fig. 3J, red line) did the likelihood of a MT in a spine increase linearly with the change in PSD-95. Thus, we conclude that when BDNF causes MTs to polymerize into previously unoccupied spines, the probability of finding MTs in these spines positively correlates with an increase in PSD-95, and that over time these spines exhibit the most robust increase in PSD-95 in the spine head.

To determine if MT dynamics and invasion into spines were necessary for regulating the level of PSD-95 we used nocodazole or taxol to block MT invasions of spines and acquired time-lapse images to monitor the level of PSD-95 and MT dynamics. We discovered that inclusion of either nocodazole (100nM) or taxol (10nM) greatly diminished MT invasions after BDNF (Fig. 4A-D); only a few brief entries of MTs occurred in some spines (Fig. 4E). These drug treatments abolished the BDNF-induced increase in PSD-95 (Fig. 4F). The percent change of PSD-95 after 20 minutes in BDNF + taxol or BDNF + nocodazole was -1.5 ± 2.1% (n= 31 spines, 3 neurons) and −1.3 ± 3.4% (n= 17 spines, 3 neurons), respectively. Moreover, treatment with taxol or nocodazole alone did not result in a significant change in PSD-95 (0.6 ± 5.7% (n= 13 spines, 3 neurons), −5.4 ± 2.8% (n= 13 spines, 3 neurons), respectively). These data show that MT dynamics are necessary for the accumulation of PSD-95 in spines following BDNF treatment and suggest that MT invasion of spines plays an important role in this process. Nevertheless, the exact contributions of dendritic MT dynamics versus MT entries into spines will require the localized disruption of dynamic MTs only in the postsynaptic spine.


In this study we discovered that BDNF rapidly increased the dwell time of MTs in dendritic spines, that MT invasions were temporally and spatially associated with increases in the level of PSD-95 in mature spines, and that MT dynamics are required for BDNF-induced PSD-95 accumulation in dendritic spines. These results provide the first direct evidence that dynamic MT entries correlate with changes in the post-synaptic molecular composition during BDNF-induced synaptic plasticity. Previous studies have established that MTs remain dynamic in spines throughout the lifetime of neurons (up to 63DIV) (Hu et al., 2008). Therefore, it is reasonable to speculate that MT invasions of spines play an important role throughout the life hippocampal neurons by dynamically regulating levels of PSD-95 in spine heads in response to increases in BDNF.

Long-term BDNF stimulation (24hrs) increases spine density in hippocampal slices and dissociated cultures (Tyler and Pozzo-Miller, 2001; Gu et al., 2008; Ji et al., 2010), and induces more spines with larger spine heads in mature neurons (Ji et al., 2010). Furthermore, short-term BDNF treatment facilitates LTP induction when paired with electrical stimulation (Kovalchuk et al., 2002; Rex et al., 2007). In this study we focused on the short-term effects of BDNF treatment. We did not observe significant changes in spine density, shape or volume within 20 minutes of BDNF application. However, MT invasions into spines increased within 5 minutes of BDNF treatment, indicating that changes in MT dynamics precede longer-term structural changes of these spines (Ji et al., 2010 ). However, we have not shown here that MT invasions directly precede spine structural changes induced by BDNF in individual spines. The effects of BDNF on LTP maintenance and stabilization of spine growth depend on TrkB activation (Kovalchuk et al., 2002; Rex et al., 2007; Tanaka et al., 2008). We discovered that pre-incubation of cultures with the tyrosine-kinase inhibitor K252a not only eliminated the elevation of MT invasions following BDNF application, but also significantly reduced baseline MT entries into spines. These results suggest that activation of the BDNF-TrkB signaling pathway regulates MT dynamics both under basal conditions and after application of exogenous BDNF.

Apart from its effects on structural spine plasticity, BDNF has also been shown to directly increase the size and average fluorescence intensity of PSD-95 puncta in spines within 60 minutes (Yoshii and Constantine-Paton, 2007). Time-lapse imaging studies have revealed that although a subpopulation of PSD-95 puncta are stable in spines for days, individual PSD-95 clusters appear and disappear from spines on the order of minutes to hours (Marrs et al., 2001; Gray et al., 2006; Tsuriel et al., 2006), indicating that these molecules remain dynamic in mature neurons. Using two-photon uncaging in the developing neocortex, median retention time of PSD-95 in spines was discovered to increase from ~22 minutes to ~100 minutes from post-natal day 10 to day 70 mice (Gray et al., 2006). It was proposed that the mobility of PSD-95 was due to diffusion and primarily regulated by PSD-95-interacting proteins in the spine head, such as CaMKII and Shank. Here we provide a novel mechanism whereby MT invasions regulate PSD-95 in the spine head. We discovered that spines invaded by MTs only after BDNF treatment showed a robust increase in PSD-95 within 20 minutes. When a polymerizing MT enters a spine during an activated BDNF signaling cascade, it may cause either an increased capture of diffusive PSD-95 or prolonged retention of PSD-95, ultimately leading to accumulation of PSD-95 in the spine head. Nevertheless, how the MT-induced increase in PSD-95 temporally correlates with spine growth remains to be tested.

Another intriguing possibility is that PSD-95 molecules are directly associated with the plus tip protein EB3 during polymerization (Sweet et al., 2011). This could result in a polymerizing MT “delivering” more PSD-95 into spine heads during MT invasions, without PSD-95 appearing as a distinct punctum. If this was the case, PSD-95 should appear concentrated, to some degree, at the tips of polymerizing MTs. We did not observe this in any of our studies and therefore favor a model in which MTs are delivering other, unknown cargo that cause PSD-95 to be captured or retained in the spine head. A recent study has identified a mechanism for PSD-95 movement out of spines via binding to neuroligin1, which in turn exits spines through dynein-based transport (Schapitz et al., 2010). Although not demonstrated directly, it is likely that this exit of neurolignin/PSD-95 occurs on MTs. However, whether invading MTs traffic cargo directly into spines remains unclear.


We would like to thank Katherine Kalil, Tim Gomez and all of the members of the Dent lab for helpful discussions and comments on the manuscript. We also thank Katherine Kalil for the use of the Amaxa electroporator. mCherry-α-tubulin in a C1 vector (Clontech) was kindly provided by Stephanie Gupton. GFP-PSD-95 was a generous gift from David Bredt. This work was supported by grants from NIH (R01-NS064014), Dana Foundation and Whitehall Foundation to E.W.D.


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