We have analysed the entire coding region and exon–intron boundaries of the
BRCA2 gene from blood DNA of 1864 men diagnosed with prostate cancer. After quality control we included 1832 DNA samples in our analysis. Of these men, 1589 were diagnosed at
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65 years () and the majority presented with clinical symptoms (data available for 1374 patients, of whom 1218 were clinically detected; 88.6%). The remaining 243 men (PrCa diagnosed >65 years) had a family history of the disease (at least one affected first degree relative with PrCa). In the 1832 samples analysed we identified 19 protein-truncating mutations, which is likely to be an underestimate of the mutation frequency, as the mutation detection method we have used (as with other high through-put methods) would have not been able to detect large deletions/rearrangements (no MLPA was conducted for this set of samples). It is also possible that a proportion of the UVs will be determined to be pathogenic in the future. All 19 deleterious mutation carriers were affected at
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65 years and no mutations were found in the older onset group with family history, which is concordant with a previous study (
Agalliu et al (2007) where no association was found between
BRCA2 mutation status and high familial risk of PrCa. Twelve mutation carriers had family history of PrCa among first- or second-degree relatives (63.2%). This represents a slight but not statistically significant excess (
P=0.24) as in the whole study 48.6% of cases
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65 had some family history of PrCa. Nine patients had family history of breast or ovarian cancer among first- or second-degree relatives (47.4%) and this is significantly higher than for non-carriers in the study (21.3%,
P=0.024). Based on these data, the strongest predictors for the presence of a germline
BRCA2 mutation are a young age of onset of PrCa and a family history of breast and/or ovarian cancer. The proportion of high-grade PrCa (Gleason score
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8) was 63%, significantly higher than in non-carriers, 15%, (
P<0.0001) and similar results were reported previously by our group and by others (
Edwards et al, 2010a;
Gallagher et al, 2010). The clinical and statistical evaluation of a much larger set of
BRCA2 mutation carrier and non-carrier PrCa cases is underway (Castro
et al, manuscript in preparation). The prevalence of
BRCA2 mutations in this study is 1.27% (8/632) for cases diagnosed
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55 years, 1.20% (19/1589) for cases diagnosed
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65 years and 0% (0/243) diagnosed >65 years;
P=0.14. Based on the previously estimated frequency of
BRCA2 mutations in the United Kingdom of 0.16%, we estimated that germline mutations in the
BRCA2 gene confer an increased RR of PrCa of ~8.6-fold (95% CI 5.1–12.6) by age 65 corresponding to an absolute risk of ~15% by age 65 years based on incidence rates in England from 2002. The estimate of RR from this study is similar to the 7.3-fold RR from the BCLC study for patients diagnosed before age 65 years (
Thompson and Easton, 2001). Our previous study reported a higher (~23-fold) RR (
Edwards et al, 2003); although this was calculated from a much smaller cohort of cases all diagnosed at
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55 years old and had a very wide confidence interval (95% CI 9–57), which overlaps that of this study. This current study provides more accurate
BRCA2 mutation frequencies for PrCa cases and relative and absolute PrCa risk estimates for
BRCA2 mutation carriers.
The protein-truncating mutations identified are situated between nucleotides 1231 and 9253, predominantly within exons 10 and 11 but not restricted to any specific domain (). The majority, however, are within either the BRC repeat region (nucleotides 3006–6255), which is responsible for RAD51 binding or the OB DNA-binding domain (nucleotides 8007–9570), both of which have an important role in DNA damage repair (
Kote-Jarai and Eeles, 1999;
Venkitaraman, 2002).
In addition to the protein-truncating mutations, we identified 3 in-frame deletions and 69 missense UVs (
Supplementary Table 1). We evaluated the missense variants using various predictive tools (SIFT, polyphen, Align GVGD, pMUT and PANTHER) and combined these with data available from previous studies on functional effects of these sequence variants. Although many of these variants were considered potentially damaging by one or more programme, but benign by another, the vast majority of the UVs identified in this study appear to be of little clinical significance. However, although we cannot rule out a small proportion being pathogenic, we prefer to take a conservative approach and only include clearly pathogenic mutations in our analysis. As a larger number of variants become classified through the efforts of groups such as the BIC and ENIGMA (
http://enigmaconsortium.org/) consortia, we can re-examine their role (if any) in PrCa susceptibility.
In conclusion, we have shown that the frequency of germline mutation in
BRCA2 in PrCa patients is ~1.20% at
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65 years. No mutations were found in cases diagnosed >65 in our series, suggesting that germline
BRCA2 mutation is far more closely linked to a younger age of PrCa onset than to a family history of PrCa. With the advent of PARPi drugs, which preferentially target tumours with a
BRCA null phenotype (
Fong et al, 2009), germline testing of patients diagnosed at
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65 years would be warranted as part of their cancer care pathway once testing becomes faster and cheaper.