For 14 cases of EGA the causing agent A. phagocytophilum was analysed with molecular methods for variations in four partial genes. Altogether, four different partial 16S rRNA gene variants of A. phagocytophilum were detected to infect horses in Germany. The variant "B" was found identical to the "prototype" variant causing disease in humans in the amplified region [GenBank: U02521] and it was discovered in 11 horses.
This variant has previously been detected in dogs, horses and in roe deer, red deer and sheep [
31,
32,
17,
15,
7,
5]. The
16S rRNA gene variant "B" seems rather rare in ticks in Germany whereas the most frequent variant in ticks seems to be "A" [3, 29, 33, Schorn S. unpublished data]. It was detected in a sample from one horse in this study.
16S rRNA gene type "S" has been detected in sheep, red deer, roe deer, ibex and
I. ricinus [
7,
3,
5], whereas type "D" has not been detected yet. Previous studies could not show a host species segregation on basis of the
16S rRNA gene [
5,
7]. However, by comparing data from our study to GenBank and to previous own investigations [
6,
7], it became evident that there seem to be
16S rRNA gene variants infecting wild and domestic ruminants (e.g. "X","Y" (Table ), as described in [
6,
7]), and others being the main variants causing disease in humans, horses and dogs (e.g. "B"; [
30,
32,
34]). This could thus indicate potential different natural cycles, even when variants can not be attributed to a particular species. Two variants detected from the clinical EGA cases in this study ("B", "S") seem, however, not confined to domestic animals, but also appear in wild animals which might act as reservoirs (like red deer and roe deer), whereas the possibly "apathogenic" variants ("X", "Y", Table ), seem to be specific for wild ruminant populations and possibly goats [
6,
7]. Several questions remain unanswered: may a reservoir animal or a tick form a "bridge" between a potential wild animal and domestic cycle, or could the infection of domestic animals be considered a "spill-over" of variants like "B" and "S"? I. e. are all variants circulating in tick-ruminant cycles, and only a small variety of those cause disease? Horses, dogs and humans have previously been proposed as accidental hosts [
35].
The American variant Ap-V1 (matching "X" [
6,
7] in the amplified part of the
16S rRNA gene), which is supposedly apathogenic, probably has the white-tailed deer as natural reservoir [
36]. This variant seems not to cross to dogs, horses and humans either. Two fully different enzootic cycles in nature were suggested for the Western United States as there was no evidence for spatial, genetic or clinical overlap between
A. phagocytophilum variants from granulocytic anaplasmosis cases (humans, horses and dogs) and those from the natural wildlife reservoir, the dusky-footed wood rat enzootic cycle [
37].
The partial
groEL gene variant "b" from this study has previously been detected in horses with EGA in Europe [
15,
19,
38], but horses suffering from EGA from Italy (Sardinia) contained different variants, which were not detected in this study [
28]. GroEL-variant "r" has previously been detected from red deer in Slovenia and "l" has been previously detected from an
I. ricinus tick in Germany. GroEL-variant "a" has been detected from both dog and roe deer in Slovenia. The clustering of the
groEL gene in phylogenetic analysis into a cluster containing sequences from roe deer and another containing sequences derived from other species may show different ancestry for different
A. phagocytophilum variants. Some variants may have evolved in a natural cycle adapted to roe deer which may be separate from other variants involving other host species. However, the variant "a" has also been detected from roe deer, which seems to be exceptional when comparing the clustering of this and of previous studies [
28]. This observation deserves more attention in future studies on genetic variants of
A. phagocytophilum. Whereas the observed nucleotide substitutions in the partial
groEL gene did not result in amino acid changes, the variation in the partial major surface protein 2 coding gene did. In the phylogenetic analysis, the partial
msp2 gene showed strong clustering between the continents. This may be due to a possible reaction or adaptation to the different vector or host species in the different geographic locations, as it may reflect different host immunity and an adaptation of the pathogen to it [
39]. On the other hand, it may be that host specificity or susceptibility are more important than geographic origin. In an experimental study on cross transmission in the US, host susceptibility and transmissibility of
A. phagocytophilum may have played a more important role than the vector tick itself [
40], which suggests different reservoir host cycles.
The amplification of the partial
msp4 gene showed little heterogeneity among horses, both on the nucleotide and at the amino acid level, whereas in large wild animals it showed great heterogeneity, also on amino acid level [
7]. In a previous study, the partial
msp4 gene variants from ruminants and those from dogs, horses and humans clustered separately [
30]. It was suggested that
A. phagocytophilum from ruminants may share characteristics, like reservoir and pathogenicity, and that they may be different from the variants found in humans. This strengthens the hypothesis that different enzootic cycles or niches of different variants possibly involving different reservoir hosts exist in nature. A thorough study of the
ankA gene from different animal sources came to similar conclusions [
5,
34]. It was hypothesised that ruminant species can host a larger variety of
A. phagocytophilum isolates due to a possible co-evolution of host and pathogen [
34]. However, we detected two variants in the partial msp4 gene that clustered within the ruminant cluster. This raises the question whether these two cases in the horses may represent a "spill-over" from ruminant variants, or whether the clustering of the
msp4 gene phylogenetic tree may only be weakly supported due to the relatively short sequence used for the comparative analysis. The use of
16S rRNA gene or parts of it as a tool for the molecular characterisation of
A. phagocytophilum has been criticized [
4,
5,
32]. Nonetheless the
16S rRNA gene may be very useful, on a broader level, for discriminating variants eliciting granulocytic anaplasmosis from those from a potential wild ruminant cycle. Even though the true genetic variety may be much larger as has been shown e.g. for
ankA and
msp2 ([
3]; results from this study) and a more comprehensive analysis of genetic variants is necessary, the
16S rRNA gene typing seems a good method for initial typing.