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Mol Biol Cell. 2011 September 1; 22(17): 2994–3009.
PMCID: PMC3164449

Mannose-6-phosphate regulates destruction of lipid-linked oligosaccharides

Reid Gilmore, Monitoring Editor
University of Massachusetts


Mannose-6-phosphate (M6P) is an essential precursor for mannosyl glycoconjugates, including lipid-linked oligosaccharides (LLO; glucose3mannose9GlcNAc2-P-P-dolichol) used for protein N-glycosylation. In permeabilized mammalian cells, M6P also causes specific LLO cleavage. However, the context and purpose of this paradoxical reaction are unknown. In this study, we used intact mouse embryonic fibroblasts to show that endoplasmic reticulum (ER) stress elevates M6P concentrations, leading to cleavage of the LLO pyrophosphate linkage with recovery of its lipid and lumenal glycan components. We demonstrate that this M6P originates from glycogen, with glycogenolysis activated by the kinase domain of the stress sensor IRE1-α. The apparent futility of M6P causing destruction of its LLO product was resolved by experiments with another stress sensor, PKR-like ER kinase (PERK), which attenuates translation. PERK's reduction of N-glycoprotein synthesis (which consumes LLOs) stabilized steady-state LLO levels despite continuous LLO destruction. However, infection with herpes simplex virus 1, an N-glycoprotein-bearing pathogen that impairs PERK signaling, not only caused LLO destruction but depleted LLO levels as well. In conclusion, the common metabolite M6P is also part of a novel mammalian stress-signaling pathway, responding to viral stress by depleting host LLOs required for N-glycosylation of virus-associated polypeptides. Apparently conserved throughout evolution, LLO destruction may be a response to a variety of environmental stresses.


An essential function of the eukaryotic endoplasmic reticulum (ER) is asparagine-linked (N-linked) glycosylation of nascent ER polypeptides. In the ER, N-linked glycans on the newly synthesized glycoproteins are processed by specific ER-associated glycosidases. The various processed glycans then interact with important ER-resident glycan-binding proteins (lectins) involved in protein folding, assembly, quality control, and, if necessary ER-associated degradation (ERAD). N-linked glycosylation absolutely requires the synthesis of a lipid-linked oligosaccharide (LLO) bearing a 14-sugar glycan in pyrophosphate linkage to dolichol (Dol), glucose3mannose9GlcNAc2-P-P-dolichol (G3M9Gn2-P-P-Dol; Figure 1). The LLO is utilized by the multi-subunit enzyme oligosaccharyltransferase (OT) for transfer of G3M9Gn2 glycans to selected asparagine residues within the context Asn-X-Ser/Thr on newly synthesized polypeptide chains within the ER lumen. An LLO intermediate (M5Gn2-P-P-Dol) is first synthesized by seven cytosolic glycosyltransferase reactions upon a Dol-phosphate (Dol-P) carrier lipid, using the nucleotide sugars UDP-GlcNAc and GDP-mannose. After transmembrane flipping, G3M9Gn2-P-P-Dol is then formed by seven additional lumenal reactions using mannose-P-Dol and glucose-P-Dol as donors, themselves generated with GDP-mannose and UDP-glucose (Kornfeld and Kornfeld, 1985 blue right-pointing triangle; Schenk et al., 2001 blue right-pointing triangle). The precursors of nucleotide sugars are simple hexose phosphates. For example, mannose-6-phosphate (M6P) is converted by phosphomannomutase to mannose-1-P (M1P), which is then reacted with GTP to form GDP-mannose.

ER stress reduces LLO consumption due to N-glycosylation. In response to ER stress, PERK is activated to phosphorylate eIF2α, attenuating translation. This diminishes nascent polypeptide chains inside the ER lumen. As many of these polypeptides ...

The congenital disorders of glycosylation (CDG) are recessive human genetic diseases diagnosed by underglycosylation of serum glycoproteins, and likely involve aberrant N-glycosylation in most tissues (Jaeken and Matthijs, 2001 blue right-pointing triangle; Marquardt and Freeze, 2001 blue right-pointing triangle). CDG patients generally present with developmental, neurological, and metabolic abnormalities during early childhood, often with poor survival. CDG type Ia, by far the most commonly diagnosed form of CDG, is caused by mutations affecting the PMM2 gene encoding phosphomannomutase. The disease is thought to result from insufficient formation of M1P by this enzyme, with compromised production of GDP-mannose for LLOs and other mannosylated glycoconjugates. However, it is also possible that dysfunctional PMM2 results in accumulation of M6P, the enzyme's substrate, which is in some way detrimental to the LLO pool. This concept is supported by work using a defined system for LLO biosynthesis, where addition of 50 µM M6P caused specific degradation of G3M9Gn2-P-P-Dol in a variety of streptolysin-O (SLO)-permeabilized mammalian cells (dermal fibroblasts, CHO-K1 cells, and primary hepatocytes), and release of free G3M9Gn2 (Gao et al., 2005 blue right-pointing triangle; Figure 1, right, inset). In this system, LLO intermediates smaller than G3M9Gn2-P-P-Dol were not sensitive to M6P-dependent cleavage, and structurally related M6P analogues, including glucose-6-P (G6P) and M1P were ineffective. These findings strongly suggest that M6P modulates a discrete target in the LLO pathway to cause G3M9Gn2-P-P-Dol degradation.

Though highly specific in nature, the context and purpose of the M6P-dependent LLO cleavage detected in permeabilized cells remains unknown. We previously reported how one stress-signaling pathway can balance LLO flux with client polypeptide load (Shang et al., 2007 blue right-pointing triangle; Figure 1). In this paper, we report that M6P-dependent G3M9Gn2-P-P-Dol degradation represents the terminus of a second, unique, stress-activated pathway in intact cells, in which M6P behaves as a signaling molecule for regulated LLO destruction. This result prompted us to reassess LLO fate in the context of viral infection, a well-known paradigm for N-glycosylation. In particular, we find that ER stress, M6P production, and LLO destruction are triggered by infection with the N-glycosylated pathogen herpes simplex virus 1 (HSV-1), suggesting a potential host-defense mechanism. We speculate that the etiology of CDG-Ia, in which M6P accumulation is predicted, may involve this mechanism having gone awry.


Initial evidence for regulated LLO destruction in intact cells—generation of Dol-P by ER stress

Transfer of the 14-sugar G3M9Gn2 glycan from LLO to nascent ER polypeptide yields Dol-P-P as a byproduct, which is efficiently recycled to Dol-P to seed a new round of LLO synthesis (Schenk et al., 2001 blue right-pointing triangle; Figure 1). As shown by others (Spiro et al., 1976 blue right-pointing triangle; Schmitt and Elbein, 1979 blue right-pointing triangle; Hubbard and Robbins, 1980 blue right-pointing triangle; Grant and Lennarz, 1983 blue right-pointing triangle) and reproduced by us (Gao and Lehrman, 2002b blue right-pointing triangle), this “dolichol cycle” is interrupted by inhibitors of protein synthesis such as cycloheximide (CHX), which traps the Dol-P in LLO molecules. It therefore seemed reasonable that physiological stimuli that slow translation would also hinder the dolichol cycle and diminish Dol-P availability. One such translation-attenuating activity is mediated by the ER-associated transmembrane kinase “PKR-like ER kinase” (PERK, also known as PEK [ Sood et al., 2000 blue right-pointing triangle]). PERK has a lumenal stress-sensing domain and a cytosolic Ser/Thr kinase domain. In response to ER stress, PERK phosphorylates the translation initiation factor eIF2α, which results in attenuated translation initiation for ER client polypeptides (Figure 1). Thus, we devised experiments to test the hypothesis that PERK activation would trap a large portion of the Dol-P pool as LLO.

Dol-P levels in normal mouse embryonic fibroblasts (MEFs) with functional PERK were consequently evaluated after treatment with either of two well-known ER stressors: dithiothreitol (DTT), which reduces disulfide bonds of ER proteins; and thapsigargin (TG), which blocks ER calcium channel ATPase activity, resulting in calcium loss. As for the M6P-dependent reaction discussed in the Introduction, proper measurement of Dol-P in the dolichol cycle requires retention of fragile ER structure by gentle permeabilization with SLO. This procedure is unlike those employing homogenization and isolation of microsomal membranes, which obscure this pool of Dol-P (Gao and Lehrman, 2002b blue right-pointing triangle). Thus, SLO treatment permits reliable study of the dolichol cycle with radioactive nucleotide sugar donors for Dol-P-dependent enzymes. Figure 2A presents the reactions and reagents used in this analysis.

ER stress causes release of Dol-P from a preexisting LLO pool. (A) Influences of ER stressors and other factors on the dolichol cycle, and assay of Dol-P with nucleotide-[3H]sugars. Reactions in black occur in intact cells, and those in gray are in SLO-permeabilized ...

In the first step of LLO formation, UDP-GlcNAc donates GlcNAc-1-P for Dol-P-dependent synthesis of GlcNAc-P-P-Dol (Lehrman, 1991 blue right-pointing triangle). Treatment with a three–amino acid OT acceptor peptide (AP), resulting in transfer of the LLO-associated glycan to the peptide and generation of Dol-P, increased GlcNAc-P-P-Dol synthesis in PERK+/+ samples to ~260% of control levels (Figure 2B). Although PERK-dependent translation attenuation was expected to strongly decrease GlcNAc-P-P-Dol synthesis by depleting Dol-P, only a mild loss of GlcNAc-P-P-Dol was measured with DTT (~60% of control levels). More surprisingly, an increase (~160% of control levels) in activity was detected with TG. Together, these data suggested that two opposing effects were in play: the anticipated suppression of Dol-P levels by ER stress due to PERK-dependent translation attenuation (Figure 1), and offsetting production of Dol-P by an unknown effect of ER stress. Testing this hypothesis with PERK−/− MEFs (Figure 2C) revealed that treatments with DTT or TG each substantially increased Dol-P (~250% of unstressed controls). This represented a large fraction of the Dol-P in PERK−/− MEFs that could be released from LLO by discharge with AP (~370% of controls). When mixed, the effects of DTT and AP were not additive, suggesting they acted upon the same pools of LLO and Dol-P (Figure 2, C–D), and DTT was not behaving as a nonspecific enzyme stimulator.

These results with PERK−/− MEFs were not limited to the GlcNAc-1-P transferase itself, because similar effects were detected with GDP-mannose used to evaluate Dol-P-dependent mannose-P-dolichol synthesis (product was increased to ~180% of unstressed controls by ER stress [ Figure 2D]). In sharp contrast to ER stressors, CHX reduced GlcNAc-P-P-Dol synthesis to ~45% of unstressed controls, demonstrating that the dolichol cycle had the expected sensitivity to translation rate (Figure 2E). The ability of CHX to trap Dol-P as LLO was countered by acceptor peptide, which released the trapped Dol-P. As in Figure 2C, the effects of the DTT and AP treatments shown in Figure 2E were not additive.

Since DTT could not supplement the effects of AP, ER stress did not appear to cause new Dol-P synthesis. Rather, the results were best explained by ER stress liberating Dol-P from preformed LLO, as did AP, by cleavage within the pyrophosphate linkage (accompanied if necessary by either pyrophosphatase or dolichol kinase action [ Schenk et al., 2001 blue right-pointing triangle]). As shown in Figure 2B, active PERK obscured this observation. Consequently, for clarity, most of our subsequent biochemical analysis of this unexpected LLO degradation was performed with PERK−/− MEFs, although key results were repeated with PERK+/+ MEFs.

ER stress increases M6P and decreases steady-state LLO levels

No signaling pathways are known that explain LLO cleavage and Dol-P generation in ER-stressed MEFs indicated in the schematic in Figure 2. As reviewed in the Introduction, we previously demonstrated that M6P can stimulate release of free glycans from LLO in permeabilized cells (Figure 1, inset), and therefore speculated this mechanism might be utilized by cells under the type of ER stress induced by DTT and TG. This hypothesis makes several testable predictions: 1) ER stress should elevate M6P to concentrations sufficient to induce LLO cleavage; 2) elevated M6P levels caused by ER stress should decrease LLOs and increase the products of their cleavage—namely Dol-P (Figure 2) and free glycans; and 3) the process should be regulated by an authentic ER stress–sensing molecule. We thus set about testing these predictions systematically, beginning with an assessment of M6P responsiveness and levels in MEFs.

We used fluorophore-assisted carbohydrate electrophoresis (FACE) as a general method for profiling steady-state levels of intracellular saccharides and associated molecules (e.g., LLOs). FACE takes advantage of fluorophore conjugation to carbohydrates, with differing purification schemes and fluorophore reactivities useful in profiling different carbohydrate species. FACE also has the advantage of not requiring glucose deprivation of cells, which is often used during metabolic labeling studies and which is capable of perturbing ER function and saccharide analysis (Gao and Lehrman, 2002a blue right-pointing triangle; Lehrman, 2007 blue right-pointing triangle). Using FACE, we first asked whether M6P specifically stimulated release of G3M9Gn2 in SLO-treated MEFs, a permeabilized cell type that had not been previously evaluated for this reaction.

As shown in Figure 3A, 50 μM M6P, but not G6P, promoted G3M9Gn2 release from LLO in SLO-permeabilized MEFs, indicating these cells contained the components needed to respond to M6P. We previously reported that several hexose-Ps in mammalian cells were mobilized by ER stress, presumably to aid glycoconjugate synthesis and ATP production (Doerrler and Lehrman, 1999 blue right-pointing triangle; Gill et al., 2002 blue right-pointing triangle). To determine specifically whether M6P increased in ER-stressed MEFs, we coupled cellular pools of hexose-Ps to the FACE fluorophore 2-aminoacridone (AMAC). As shown in Figure 3B, glucose-1-P (G1P), G6P, fructose-6-P (F6P), and M6P (as well as several unidentified species) were all increased by DTT and TG. When corrected for cellular volume, M6P concentrations in PERK−/− MEFs increased about fourfold, from 60 μM to 250 μM (Figure 3C). Notably, G1P is a direct product and the other hexose-Ps are indirect products of glycogen breakdown by glycogen phosphorylase (GP).

ER stress elevates M6P. (A) SLO-permeabilized normal (MPI+/+) MEFs were incubated 1 h at 37°C with nucleotide sugar LLO precursors in the absence or presence of 100 μM G6P, 100 μM M6P, and/or 200 μM M6Po. Released free ...

These data showed that MEFs contain the M6P-responsive component(s) needed for LLO cleavage, and that ER stress can increase M6P in intact MEFs in the required concentration range. To directly assess whether the elevated M6P might have caused LLO cleavage, and therefore provide an explanation for the generation of Dol-P (Figures 2 and and4A)4A) in intact stressed MEFs, we used a variation of the FACE technique in which the glycan portions of LLOs were released from the lipid carrier with mild acid, and then labeled with the fluorophore 7-amino-1,3-naphthalenedisulfonic acid (ANDS; Gao and Lehrman, 2006 blue right-pointing triangle; Lehrman, 2007 blue right-pointing triangle). Interestingly, both DTT and TG stresses resulted in a statistically significant suppression of G3M9Gn2-P-P-Dol levels in PERK−/− MEFs (Figure 4B). No truncated LLOs were generated (Figure 4C). Thus, there was no degradation within the LLO glycan moiety, further supporting the hypothesis that ER stress activated LLO cleavage within the pyrophosphate linkage.

LLO destruction in ER-stressed MEFs. (A) LLO cleavage is expected to elevate levels of Dol-P/Dol-P-P and lumenal free glycans, the latter digested by lumenal glycosidases. (B) FACE measurements of G3M9Gn2-P-P-Dol for DTT- (black) or TG- (gray) treated ...

ER stress causes the appearance of LLO-derived free glycans

Using FACE, we next measured levels of free glycans predicted by hydrolysis of G3M9Gn2-P-P-Dol (Figure 4A). Conjugation of the ANDS fluorophore requires a reducing end on the oligosaccharide, which could result from cleavage between the reducing terminal GlcNAc and the pyrophosphate linkage, or cleavage within the pyrophosphate linkage followed by dephosphorylation of the resulting phospho-oligosaccharide. After DTT or TG treatments, free glycan pools in PERK−/− MEFs were altered significantly (Figure 5A) with an approximately twofold increase of the total pool (presented below in Figure 6). Although G3M9Gn2 itself was not apparent in free glycan pools, it could be preserved by inclusion of the glucosidase inhibitor castanospermine (Figure S1), consistent with rapid digestion by intracellular glycosidases. However, castanospermine was not used routinely in our experiments because it causes ER stress (Doerrler and Lehrman, 1999 blue right-pointing triangle).

ER stress generates LLO-derived lumenal free glycans. (A) Free glycans in PERK−/− MEFs after treatments with DTT, TG, or TN. The positions of M5Gn2 and G3M9Gn2 standards on FACE gels are shown. (B) PERK−/− MEFs were left ...
Glycogen phosphorylase inhibitors block ER stress–induced hexose-P mobilization and free glycan increases. (A) Scheme linking glycogenolysis and extracellular mannose to hexose-Ps and GDP-mannose. Three GP inhibitors are indicated. Determinations ...

Significantly, free glycans released by ER stress were sensitive to diagnostic enzymatic digestions for LLO-type structures. Glycans that migrated more slowly than the G6 standard (Figure 5B), in the range expected for M6Gn2 to G3M9Gn2, were susceptible to endoglycosidase H—an enzyme that senses the presence of a specific α1,3-linked mannosyl residue on mature LLOs and many of the larger LLO intermediates. Moreover, all of the glycans were sensitive to jack bean α-mannosidase. This enzyme cleaves exposed α-linked mannosyl residues expected on LLO-derived glycans. The observation of a resistant fragment in the G5–G6 range is consistent with the presence of blocking glucosyl residues, which are also a feature of some LLO-derived glycans. Tunicamycin (TN), an inhibitor of LLO synthesis as well as an inducer of ER stress, did not increase free glycans (Figure 5A).

These data were highly consistent with destruction of LLO by ER stress, yielding Dol-P and free glycans (Figure 4A). However, a possibility remained that the free glycan increases were actually caused by ERAD of nascent glycoproteins destabilized by ER stressors (Figure 5C). This could be especially severe in PERK−/− MEFs, which are unable to limit new glycoprotein synthesis in response to ER stress. To distinguish between LLO cleavage and ERAD, we analyzed the subcellular compartmentalization of the free glycans. Glycans increased by ERAD should be cytosolic, while LLO-derived glycans should be lumenal (Chantret and Moore, 2008 blue right-pointing triangle). These populations can be distinguished as retained (lumenal) and diffusible (cytosolic) glycan pools after permeabilization with SLO (Moore et al., 1995 blue right-pointing triangle; Figure 5C).

As expected, the two types of free glycan pools in MEFs were distinctly different (Figure 5D). Significantly, both DTT and TG increased lumenal free glycan pools, while there were no effects on cytosolic pools. This showed that ER stress caused LLO cleavage, but without a free glycan contribution by ERAD. Further, z-VAK-fmk (an inhibitor of cytosolic N-glycanase [ Misaghi et al., 2004 blue right-pointing triangle]), did not prevent the ER stress–dependent increase of free glycans. Experiments presented with inhibitors of glycogen phosphorylase also address ERAD.

In summary, ER stress–induced increases of M6P in intact cells correspond with loss of G3M9Gn2-P-P-Dol and appearance of LLO-derived Dol-P and lumenal free glycans. While fastidious LLO biosynthesis is critical for proper N-linked glycosylation, our results suggested M6P might have a paradoxical function in impeding LLO usage. The experiments that follow, which were intended to further elucidate M6P's role, evaluated the metabolic origin of M6P, its necessity for LLO cleavage, and its signaling pathway.

ER stress–dependent M6P originates from glycogen and is necessary for LLO cleavage

We considered hypotheses for both intracellular and extracellular sources of the ER stress–generated hexose-Ps. Since ER stress does not appear to stimulate hexose transport or hexokinase activities (Doerrler and Lehrman, 1999 blue right-pointing triangle; Gill et al., 2002 blue right-pointing triangle), it was unlikely that intracellular hexose-Ps were increased by these mechanisms. In contrast, ER stress did correlate with decreased glycogen content (Gill et al., 2002 blue right-pointing triangle), and it also correlated with increases in metabolites of glycogenolysis (Figures 3B and and6A),6A), suggesting that glycogen may be an intracellular source of these sugars.

The hypothesis that ER stress triggered glycogenolysis was tested by treating ER-stressed MEFs with a highly efficacious inhibitor of GP, the indole-2-carboxamide CP-91149 (Figure 6A; Martin et al., 1998 blue right-pointing triangle). As shown in Figure 6B, CP-91149 efficiently blocked the appearance of all DTT- and TG-inducible G1P, the immediate product of glycogenolysis. Equally as important, blocking glycogenolysis with CP-91149 also prevented the increases of G6P, F6P, and M6P (Figure 6C), all of which can be formed from G1P (Figure 6A). To address the possibility that a nonglycogen source of sugars was blocked by an unexpected off-target activity of CP-91149, we evaluated two additional GP inhibitors having different mechanisms than CP91149. While CP-91149 interacts with a novel GP site (Oikonomakos et al., 2000 blue right-pointing triangle; Rath et al., 2000 blue right-pointing triangle), caffeine inhibits the known purine-binding site (Johnson, 1992 blue right-pointing triangle), and 1,4-dideoxy-1,4-imino-d-arabinitol (DAB) targets the catalytic site (Oikonomakos et al., 2006 blue right-pointing triangle). Like CP-91149, these two GP inhibitors impaired DTT- and TG-dependent hexose-P mobilization (unpublished data). From these experiments and earlier results (Gill et al., 2002 blue right-pointing triangle), we conclude that glycogen is the source of ER stress–dependent hexose-Ps.

If LLO cleavage is caused by M6P produced via ER stress–dependent glycogenolysis, then GP inhibitors should prevent the formation of LLO-derived free glycans. As shown in Figure 6D, this was indeed the case: CP-91149, caffeine, and DAB each hindered DTT- and TG-dependent free glycan increases. These results also further ruled out a contribution by ERAD (which should have been insensitive to these inhibitors), as well as LLO cleavage by a nonspecific effect of ER stress on the labile pyrophosphate bond. Collectively, these results link ER stress to glycogenolysis, elevated M6P, and LLO cleavage.

M6P introduced in the absence of ER stress is sufficient to cause LLO cleavage

To test the sufficiency of M6P for LLO cleavage by an independent method, we introduced it into cells at appropriate concentrations, but in the absence of ER stress. As shown in Figures 7, A–C, a 60-min incubation of PERK−/− MEFs in medium supplemented with 10 mM d-mannose increased intracellular M6P by three- to sixfold, to ~180 μM (Figure 3C). Using analyses similar to those described in the preceding sections for ER-stressed cells, we found that these conditions stimulated LLO cleavage: G3M9Gn2-P-P-Dol decreased to 82 ± 2% (n = 2) of untreated levels, and significantly, lumenal free glycans increased (Figures 7, A–D). There was no effect of incubation with 10 mM d-galactose, the 2- and 4-epimer of d-mannose. LLO cleavage was therefore not explained by nonspecific osmotic factors.

Elevation of M6P in the absence of ER stress releases free glycans. (A–D) PERK−/− MEFs were incubated with (A, B) variable concentrations of mannose for 60 min; (C) 10 mM mannose for variable times; or (D) 10 mM mannose for 60 ...

Mannose treatment itself did not cause ER stress, because stress-associated hexose-6-Ps other than M6P (i.e., G6P and F6P) were not elevated (Figure 7, A and andC).C). Mannose treatment of MEFs did not increase GRP78/BiP mRNA, and neither brief nor extended mannose treatments increased splicing of XBP1 mRNA (Figure S2), both sensitive markers for ER stress signaling. Mannose treatment generated free glycans even during CHX treatment, to prevent synthesis of newly synthesized glycoproteins, which might be ERAD substrates and hence glycan sources (unpublished data). Therefore, we find no evidence that the free glycans generated by mannose treatment were due to inadvertent ER stress or ERAD.

As seen in Figure 7A, 10 mM mannose treatment increased both M6P and M1P. However, M1P was not increased by ER stress, and none of the other ER stress-induced metabolites of glycogenolysis (G1P, G6P, and F6P) were increased by mannose treatment. Thus M6P was the only hexose-P increased under all conditions causing LLO cleavage. It is unclear why elevated M6P appeared to drive formation of M1P (a single enzymatic step; Figure 6A) after mannose incubation; but not with ER stress; perhaps ER stress also promotes reactions that consume M1P. Coupled with the strong specificity for M6P in permeabilized cell experiments (Figure 3A; Gao et al., 2005 blue right-pointing triangle), we conclude that increased M6P is sufficient to drive LLO cleavage in intact cells, even in the absence of ER stress.

Inhibition by a structural analogue reveals a defined M6P target

Taken together, our data surprisingly implicate M6P as a signaling molecule. As such, it would be predicted to have a defined target, and be regulated by other signaling components. To understand these biological properties in greater detail, we adopted two approaches. First, we probed for the presence of an M6P interaction site in LLO cleavage reactions. Second, we sought to identify the signal transducer that triggers glycogenolysis (and hence M6P production) in response to ER stress. Some aspects of the M6P interaction site could already be deduced by our earlier permeabilized-cell experiments. Our findings that both M1P and G6P (the 2-epimer of M6P) failed to promote LLO cleavage suggested that the orientation of the 2-hydroxyl and the position of the phosphate in M6P are important for the M6P interaction and M6P-dependent signaling.

To further explore the requirements for M6P's interaction with a target site, we synthesized the nonhydrolyzable analogue mannose-6-phosphonate (M6Po; Figure S3A; compound 11 in Belakhov et al. [2004 blue right-pointing triangle]). The M6Po preparation was free of detectable contaminating M6P (Figure S3B), and M6Po alone did not cause LLO cleavage with SLO-permeabilized cells (Figure S3C). However, inclusion of M6Po partially inhibited LLO cleavage caused by M6P, while inclusion of G6P or M1P had no effect (Figures 3A and S3D). The esterifying oxygen atom of M6P is therefore important for LLO cleavage, but not for binding to the M6P target site, allowing M6Po to antagonize M6P. It remains to be determined whether the esterifying oxygen mediates an activation step at the target site, and/or is involved in a requirement for M6P hydrolysis.

Authentic UPR signaling mobilizes hexose phosphates

To identify signaling components that might regulate M6P, we focused upon the abilities of DTT and TG to promote glycogenolysis, and considered two possibilities. First, as known ER stressors, DTT and TG might have triggered the unfolded protein response (UPR), an elaborate set of signaling events that occur in response to the presence of excess misfolded protein in the ER lumen (Schröder and Kaufman, 2005 blue right-pointing triangle; Ron and Walter, 2007 blue right-pointing triangle; Figure 8A). Alternatively, these agents may have unexpectedly altered hexose metabolic pathways by their effects on redox potential and calcium homeostasis. If the UPR was involved, hexose-P mobilization should be diminished by stable overexpression of GRP78/BiP (Dorner et al., 1992 blue right-pointing triangle) to counteract dissociation of this chaperone from lumenal stress-sensing domains of UPR-signaling proteins and attenuate their activities (Figure 8A).

UPR signaling by IRE1α mobilizes hexose-Ps. (A) UPR-dependent actions of chemicals that cause protein misfolding can be distinguished from other possible effects of these chemicals by overexpression of GRP78/BiP. Under normal conditions, sufficient ...

As shown in Figure S4A, overexpression of GRP78/BiP caused the expected reduction of UPR-dependent XBP1 splicing by either DTT or TG. Since the GRP78/BiP overexpressing cells were derived from tumor-like CHO-K1 cells, they were expected to have enhanced glycolysis (Levine and Puzio-Kuter, 2010 blue right-pointing triangle), which could complicate hexose-P analysis; most of the F6P from glycogenolysis would likely be catabolized for ATP production, leaving little for conversion to M6P. We therefore focused on G6P, the intermediate preceding F6P, as an alternative readout for glycogenolysis (Figure 6A). As shown in Figure 8B, DTT and TG clearly elevated G6P in unmodified CHO-K1 cells, while G6P production was suppressed by overexpressing GRP78/BiP. Thus, one or more UPR-signaling proteins were responsible for mobilization of hexose-Ps.

Hexose-6-P mobilization is fast (detectable within 10 min of DTT application [ Gill et al., 2002 blue right-pointing triangle]), arguing against transcriptional control. This focused our attention on the UPR transmembrane kinases PERK and inositol-requiring enzyme 1 (IRE1), which employ rapid autophosphorylation mechanisms and can be evaluated directly with MEF knockout lines. Knockout of PERK did not affect the abilities of DTT or TG to mobilize G6P or M6P (Figures 3B and and8C).8C). However, the response was blocked by knockout of IRE1α (Figure 8C). Three nucleotide sugars (UDP-GlcNAc, GDP-mannose, and UDP-glucose) synthesized from hexose-Ps also increased with ER stress, but also required IRE1α (Figure S4B). These results implicated IRE1α as an essential UPR component involved in glycogenolysis and hexose-P generation.

To independently assess the requirement for IRE1α, we used RNA interference. Suppression of IRE1α in normal MEFs with four pooled small interfering RNAs (siRNAs) caused 68–95% loss of IRE1α protein (Figure 8D) and inhibited hexose-P mobilization (Figure 8E). This result was extended with two individual siRNAs from the pool found most responsible for IRE1α suppression. Knockdown with either siRNA (designated siRNA1 and siRNA2, which reduced IRE1α protein to 48% or 38% of the buffer control, respectively) also prevented hexose-P mobilization. By comparison, a pool of four nontargeting siRNAs had no effect (Figure 8F). Taken together, knockout and knockdown experiments showed that IRE1α is necessary for hexose-P mobilization by the UPR.

Signaling by the IRE1α kinase domain triggers glycogenolysis

IRE1α is a single-pass transmembrane protein composed of a lumenal stress-sensing domain, and a cytosolic unit with a Ser/Thr kinase domain followed by an RNase domain. Both of the cytosolic domains are catalytically functional. In metazoans, IRE1α exerts most of its homeostatic effects by activating transcriptional programs via the ability of the RNase domain to regulate splicing of mRNA encoding the transcription factor XBP1 (Schröder and Kaufman, 2005 blue right-pointing triangle; Ron and Walter, 2007 blue right-pointing triangle). However, hexose-P mobilization and nucleotide sugar increases still occurred in ER-stressed XBP1−/− MEFs, although the TG responses were somewhat attenuated compared with DTT responses for reasons which remain unclear (Figures 8C and S4C). The absence of a requirement for XBP1 suggested two potential mechanisms for increasing hexose-Ps. As shown previously, it was possible that the IRE1α RNase domain caused degradation of a preexisting regulatory mRNA (Hollien and Weissman, 2006 blue right-pointing triangle; Hetz and Glimcher, 2009 blue right-pointing triangle). Such a mechanism might have degraded an mRNA involved in limiting glycogenolysis, causing elevation of hexose-P levels. Alternatively, IRE1α might have sent a signal directly from its kinase domain to stimulate glycogenolysis, without participation by the RNase domain.

To determine whether the entire cytosolic unit (kinase plus RNase domains) or the isolated kinase domain of IRE1α could activate glycogenolysis, we employed strategies used previously for expressing soluble fusions of the cytosolic units of yeast IRE (Aragon et al., 2009 blue right-pointing triangle) and mammalian IRE1α (Back et al., 2006 blue right-pointing triangle) to FKBP12-derived modules that bind the dimerizer AP20187 (Figure 9A). By dimerizing the fusion proteins, AP20187 promotes direct interaction of the attached domains and consequent activation of downstream events, including those possibly requiring transautophosphorylation. Rather than transient transfection (Back et al., 2006 blue right-pointing triangle), we prepared stable CHO-K1 transfectants to avoid contributions of hexose-Ps from untransfected cells in transiently transfected pools (Figure 9B). Thus, as for Figure 8B, we limited our analysis of these CHO-K1–derived lines to G6P.

Inducible activation of the IRE1α kinase domain signals hexose-P mobilization. (A) AP20187 was used to dimerize the entire cytosolic unit of IRE1α (RNase + kinase domain) or the isolated kinase domain. (B) Immunoblots (anti-HA antibody) ...

In cells expressing the empty vector, AP20187 was inert as expected. However, in cells expressing the entire IRE1α cytosolic unit (kinase and RNase), AP20187 increased G6P (Figure 9C). This showed that IRE1α signaling is sufficient to mobilize hexose-P. As anticipated, cells expressing the kinase-only fusion protein failed to stimulate XBP1 splicing with AP20187 (Figure S5A). Yet, G6P in these cells was mobilized within 20 min of AP20187 addition at levels equivalent to those achieved with DTT-induced stress (Figure 9C). Preliminary experiments suggest this activity requires kinase function, because it was abrogated by a Lys599Ala kinase-dead mutation, although the mutant protein was stably expressed. The effects of IRE1α activation were transient, suggesting a process for disengagement of signaling; after an initial increase, we detected a recovery phase within 1 h (Figure 9D). To verify that glycogenolysis was involved, we tested the GP inhibitor CP-91149. As shown in Figure 9E, CP-91149 blocked the AP20187-dependent increase of G6P in cells expressing the AP20187-responsive kinase domain. An extensive analysis of potential off-target effects of CP-91149 and AP20187 on reactions relevant to this study was performed (Figures S5B–F). Although some unanticipated effects of CP-91149 were identified, they did not affect the final outcomes of the experiments reported here. Moreover, there was no unexpected interference between CP-91149 and AP20187.

In summary, UPR signaling involving the IRE1α kinase domain activates glycogenolysis to elevate hexose-Ps. This allows IRE1α to regulate the ability of M6P to cause LLO destruction.

PERK stabilizes LLO pools despite ongoing LLO destruction

In general, the UPR plays an important role in maintaining ER homeostasis. Along these lines, the UPR can aid LLO assembly (Lehrman, 2006 blue right-pointing triangle). One mechanism involves a role for PERK in balancing translation rates to compensate when LLO flux is impaired (Shang et al., 2007 blue right-pointing triangle; Figure 1). Additionally, since ER stress increased hexose-Ps, which are precursors of UDP-GlcNAc, GDP-mannose, and UDP-glucose, the nucleotide sugar building blocks for LLOs, we measured these molecules directly. As shown in Figure S4B, all three nucleotide sugars were increased by the UPR in an IRE1α-dependent manner, suggesting yet another mechanism by which the UPR may assist LLO assembly. LLO destruction by the UPR therefore presents a serious paradox. To address this problem, we hypothesized that suppression of LLO levels by a destructive mechanism in normal cells under conventional ER stress might be compensated by PERK, which can reduce LLO consumption by limiting N-glycoprotein synthesis (Figure 1).

Like PERK−/− MEFs, PERK+/+ MEFs underwent LLO destruction in response to ER stress. Hexose-Ps, including M6P, were elevated (Figures 3B and and8C)8C) and free glycans, resulting from LLO cleavage, were formed (Figure 5E). The other LLO cleavage product, Dol-P, appeared to be generated as well, although PERK's translation-attenuating activity predictably reduced the amount of Dol-P detected (Figures 2B,C). Free glycan formation in PERK+/+ MEFs was also responsive to mannose treatment (Figure 7E). However, steady-state G3M9Gn2-P-P-Dol levels were unaffected by either DTT or TG stress in PERK+/+ MEFs (Figure 4B). In comparison, these stressors decreased LLO levels in PERK−/− MEFs by ~50%. This was attributable solely to differences in translation rate, because LLO levels in DTT-stressed PERK−/− MEFs were returned to normal by pharmacological rescue with the translation inhibitor CHX (Figure 10A).

HSV-1 infection mobilizes M6P, with destruction and depletion of LLOs. (A) Uninfected PERK−/− MEFs were treated with 2 mM DTT and/or 0.2 mM CHX for 1 h, as indicated, and G3M9Gn2-P-P-Dol was measured (n = 3, mean ± SEM). *, p < ...

These results demonstrate that translation attenuation by ER stress–activated PERK can ameliorate the effect of LLO destruction by stabilizing steady-state G3M9Gn2-P-P-Dol levels. In this respect, the outcome of IRE1α/M6P signaling is antagonized by PERK. IRE1α/M6P signaling and LLO destruction themselves, however, are independent of PERK.

M6P signaling, LLO destruction, and LLO depletion during a pathogenic challenge with HSV-1

Since LLO destruction appeared benign in normal PERK-expressing cells under conventional ER stress with DTT or TG, we hypothesized that a biological context for LLO destruction might involve an abnormal condition, where loss of LLOs could be advantageous. One such condition could be infection with a pathogen required to synthesize N-glycosylated components, a conjecture we chose to test with HSV-1, because this virus contains a number of envelope N-glycoproteins (Compton and Courtney, 1984 blue right-pointing triangle, 1985 blue right-pointing triangle). In addition, virally infected mammalian cells can attenuate translation to hinder synthesis of viral polypeptides and to initiate autophagy/xenophagy (Tallóczy et al., 2002 blue right-pointing triangle, 2006 blue right-pointing triangle; Orvedahl et al., 2007 blue right-pointing triangle), but HSV-1 has developed countermeasures to prevent translation attenuation, including that dependent upon PERK (Mulvey et al., 2007 blue right-pointing triangle). This increased the likelihood that any LLO destruction induced by HSV-1–associated ER stress might also suppress LLO levels, as we observed in PERK knockout cells stressed with DTT and TG (Figures 4B and 10A).

Normal MEFs were mock-infected, infected with HSV-1 at saturating multiplicity, or TG-treated. Hexose-Ps, free glycans, and LLOs were then harvested. Shown in Figure 10B, G6P and M6P increased similarly after TG treatment and 12 h postinfection (h.p.i.) with HSV-1, which is indicative of ER stress caused by infection. LLO destruction occurred in both cases, resulting in an increased pool of qualitatively indistinguishable free glycans (Figure 10C). Importantly, normal MEFs under HSV-1–induced ER stress had LLO levels decreased by ~50% (Figure 10, B and D), similar to that observed with PERK−/− MEFs under conventional ER stress (Figure 4B). There was little effect at 5 h.p.i., when synthesis of a representative glycoprotein (gC) was barely detectable (Figure S6A), but substantial effects were identified at 8–11 h.p.i. At this level of infection, when envelope glycoprotein synthesis was abundant, there was good temporal agreement between increases of M6P, increases of free glycans, and LLO loss (Figure 10D). To evaluate the plausibility of this approach for characterizing LLO destruction in the future with other enveloped viruses studied elsewhere, we demonstrated that results with HSV-1–infected MEFs prepared and analyzed in MAL's laboratory (Figure 10) were also observed with methanolic suspensions of HSV-1-infected MEFs prepared by IM's laboratory and shipped to the MAL's laboratory for analysis (Figure S6B). Taken together, we propose that viral infection is a biological context for M6P signaling and LLO destruction, possibly to suppress levels of LLOs required by the pathogen.


LLO destruction modifies the paradigm for protein N-glycosylation

The enigmatic ability of free M6P to promote cleavage of LLO molecules in permeabilized mammalian cells, reported earlier (Gao et al., 2005 blue right-pointing triangle), is shown here to represent the terminus of a signaling pathway for regulated LLO destruction. This pathway is triggered by ER stress, leading to a cascade of IRE1α kinase domain activation, enhanced glycogenolysis, and elevated M6P concentrations (Figure 11). Complementary approaches demonstrated that increased M6P is both necessary and sufficient for LLO destruction, which yielded Dol-P plus lumenal free glycans to indicate cleavage within the pyrophosphate linkage. With conventional ER stressors (DTT, TG) in normal MEFs, PERK's ability to attenuate translation stabilized LLO levels in spite of ongoing LLO destruction. In contrast, stresses that accompanied an absence of PERK function (i.e., in DTT/TG-treated MEFs lacking PERK, or in normal MEFs infected by HSV-1) not only activated this pathway, but also resulted in significant suppression of LLO levels. These studies were initiated to explore a possible role of M6P in CDG-Ia, and support the notion that both elevated M6P and diminished M1P may contribute synergistically to the etiology of this disease. This dual effect may explain the high frequency of its diagnosis, compared with all other forms of CDG. Together, our findings alter the broadly accepted paradigm for LLO synthesis and protein N-glycosylation to include unanticipated roles for regulated destruction of LLOs by M6P signaling.

LLO destruction and depletion by M6P signaling during a pathogenic UPR. LLO destruction involves UPR signaling by the IRE1α kinase domain, and mobilization of M6P from glycogen. M6P then promotes LLO cleavage, yielding dolichol-P and lumenal free ...

Our results help explain recent results from experiments in which mannose metabolism was perturbed. In phosphomannose isomerase–deficient MEFs unable to interconvert M6P with F6P, incubation with 0.5 mM mannose medium significantly increased cellular M6P (Higashidani et al., 2009 blue right-pointing triangle). Interestingly, the M6P elevation was associated with decreased G3M9Gn2-P-P-Dol, although Dol-P and free glycans were not measured. In a different approach, mannosidase Man2C1, which catabolizes free cytosolic glycans to mannose, was overexpressed in HeLa cells (Bernon et al., 2011 blue right-pointing triangle). This maneuver also increased M6P, virtually eliminated G3M9Gn2-P-P-Dol, and elevated free glycans having truncated LLO-type structures. Those authors concluded that the free glycans did not result from the type of LLO cleavage we reported with permeabilized cells (Gao et al., 2005 blue right-pointing triangle), because intact LLO-type glycans were detected in those earlier experiments. However, as we now report, LLO glycans released in ER-stressed intact cells become glycosidically degraded, and therefore appear consistent with glycans detected after Man2C1 overexpression. It still remains to be established whether the latter are lumenal or cytosolic.

Prior studies on saccharide metabolism in HSV-1–infected cells also agree well with the data presented in this paper. HSV-1 infection of human embryonic lung fibroblasts increased UDP-glucose (Brennan et al., 1976 blue right-pointing triangle), similar to results in Figures S4B and S6B. In addition, LLO levels were suppressed ~36% in HSV-1–infected African green monkey kidney (Vero) cells (Compton and Courtney, 1985 blue right-pointing triangle), in accord with our measurements with MEFs (Figure 10, B and D). However, to our knowledge, this is the first study to report hexose-P increases during HSV-1 infection, and very little has been reported on this topic in virally infected cells.

M6P is a signaling molecule for an evolutionarily conserved process

M6P is the first small molecule reported to have a signaling role in the UPR, although other sugar phosphates can mediate signaling in unrelated pathways (Kabashima et al., 2003 blue right-pointing triangle). In this context, M6P appears to be acting similar to a second messenger. Its action involves amplifiable steps: M6P synthesis depends upon rapid enzymatic mobilization from a glycogen store, and it promotes an apparently catalytic process for LLO cleavage. Antagonism by the analogue M6Po suggests a defined target site. We have yet to demonstrate that M6P can be specifically inactivated to end signaling, a criterion for classical second-messenger action. However, if M6P has a special host-defense role in infected cells (see following section), it may be disadvantageous to terminate its action.

The M6P-activated enzyme remains unknown. OT is a strong candidate, because this enzyme naturally recognizes G3M9Gn2-P-P-Dol, is less efficient with smaller LLO intermediates, and normally cleaves LLO at a slow basal rate in a process known as “transfer to water” (Turco et al., 1977 blue right-pointing triangle; Kelleher et al., 2003 blue right-pointing triangle; Gao et al., 2005 blue right-pointing triangle). Unfortunately, enriched OT preparations cannot be properly evaluated, because M6P-dependent LLO cleavage requires intact ER structure preserved by SLO-permeabilization (Gao et al., 2005 blue right-pointing triangle). M6P does not penetrate the ER of hepatocytes (Arion, 1989 blue right-pointing triangle), which are capable of M6P-dependent LLO cleavage (Gao et al., 2005 blue right-pointing triangle). We therefore suggest that M6P might interact with an ER component having cytosolic elements, possibly one of the cytosolic domains of OT itself. Although little is known about the functions of OT's cytosolic sequences, one possible regulatory role has been reported for the Saccharomyces cerevisiae enzyme (Chavan et al., 2003 blue right-pointing triangle). It also remains to be determined whether LLO destruction could be carried out specifically by one of the two functionally distinct isoforms of OT (Ruiz-Canada et al., 2009 blue right-pointing triangle).

The bacterium Campylobacter jejuni, like eukaryotes, possesses an N-glycosylation pathway. It was recently shown that LLO destruction also occurs in this bacterium in response to hypoosmotic conditions (Nothaft et al., 2009 blue right-pointing triangle). Although the signaling pathway was not elucidated, release of bacterial oligosaccharides required OT activity, and was proposed to regulate periplasmic volume in response to osmotic changes. This suggests that LLO destruction may be an evolutionarily conserved response to environmental stress in multiple kingdoms of life.

A new signaling role for the IRE1 kinase domain—exacerbation of LLO imbalance

Although RNase activity is important in most IRE1α signaling, our data reveal additional RNase-independent signaling by the kinase domain, as have other studies (Lipson et al., 2006 blue right-pointing triangle). In particular, the “IREα interactome” mediates a number of scaffold activities of the autophosphorylated kinase domain that are important for apoptosis and autophagy (Hetz and Glimcher, 2009 blue right-pointing triangle). Presently, the only known kinase substrate of IRE1α is itself. Our preliminary results suggest kinase function is required for IRE1α stimulation of glycogenolysis, a process clearly sensitive to phosphorylation (Johnson, 1992 blue right-pointing triangle). Phospho-IRE1α, or a downstream relay, might conceivably phosphorylate a glycogenolysis factor. Since chronic ER stress is associated with obesity and insulin resistance (Özcan et al., 2004 blue right-pointing triangle), and glycogen metabolism is an important factor in glycemic control, our results suggest a new mode of involvement for IRE1α in these conditions.

At first glance, LLO destruction by conventional/physiological ER stress seems counterintuitive, because LLOs are required for N-glycosylation. However, LLO levels were suppressed by LLO destruction only when PERK function was impaired, such as by PERK knockout or infection by HSV-1. This pathogen interferes with PERK signaling to impair xenophagy and maximize production of envelope proteins, which require LLOs. Thus HSV-1 disables the brake that would otherwise match protein synthesis to LLO amount (Figure 1). As we showed previously, N-glycoprotein synthesis without this brake becomes unbalanced, and LLO need can outpace supply (Shang et al., 2007 blue right-pointing triangle). In support of this concept, envelope glycoproteins gB and gC in HSV-1–infected Vero and HEp-2 cells were underglycosylated (Compton and Courtney, 1984 blue right-pointing triangle). In our study, gC in lysates of HSV-1–infected MEFs was also underglycosylated (Figure S6C). We suggest that LLO destruction signaled by IRE1's kinase domain functions to exacerbate the LLO imbalance caused by unabated viral polypeptide production, resulting in suppression of LLO levels and underglycosylation of viral polypeptides (Figure 11).

In this respect, LLO destruction could be an “arms race” mechanism to specifically penalize pathogens that interfere with host defenses involving PERK and eIF2α signaling (Tallóczy et al., 2002 blue right-pointing triangle; Mulvey et al., 2007 blue right-pointing triangle). The apparent futility of M6P causing destruction of its downstream LLO product may therefore be an advantage. Since it is used for synthesis of the LLO precursor GDP-mannose, M6P may be pathogen-proof, as pathogens with N-glycosylated components would suffer if they caused M6P loss. To evaluate such hypotheses, interference with either IRE1α or GP are unattractive experimental options, due to complicating pleiotropic effects. Rather, we envision experiments that interfere directly with LLO destruction, with the predicted result of more highly glycosylated virus populations with the potential to influence virulence and/or pathogenesis. It would also be fruitful to screen for viruses that have devised mechanisms to disable the LLO destruction reaction.



We received at no cost CP-91149 from Pfizer (Groton, CT), and AP20187 and ARGENT vectors from Ariad Pharmaceuticals (Cambridge, MA). TN, TG, DTT, CHX, 1,4-dideoxy-1,4-imino-d-arabinitol, caffeine, M6P, G6P, F6P, G1P, M1P, and mannose (all hexoses in d configuration) were from Sigma-Aldrich (St. Louis, MO). z-VAK-fmk was from Promega (Madison, WI). Control and acceptor tripeptides for OT were designed and synthesized by SynPep (Dublin, CA) as previously described (Gao and Lehrman, 2002b blue right-pointing triangle). ANDS and AMAC were from Molecular Probes/Invitrogen (Carlsbad, CA), and all other FACE supplies were obtained as previously described (Gao and Lehrman, 2002a blue right-pointing triangle). Endoglycosidase H was from Calbiochem (San Diego, CA), and jack bean α-mannosidase was from Glyko/Prozyme (Hayward, CA). SLO was from Corgenix (Broomfield, CO). Radiolabeled compounds were UDP-[3H]GlcNAc (36 Ci/mmol; DuPont, Wilmington, DE), GDP-[3H]mannose (15 Ci/mmol; American Radiolabeled Chemicals, St. Louis, MO), [3H]inulin (510 mCi/mmol; Amersham, GE Healthcare, Waukesha, WI), and [14C]urea (59 mCi/mmol; Amersham). Anti-HA (#2999), anti-PERK (#3192), anti-GAPDH (#3683), anti–phospho-eIF2α (#9721), and anti-IRE1α (#3294) were from Cell Signaling Technology (Danvers, MA). Anti–HSV-1 gC (#NB110-57251) was from Novus Biologicals (Littleton, CO). Antitubulin was a gift of Melanie Cobb (University of Texas Southwestern Medical Center at Dallas).

Cell cultures

Cell culture media were from Invitrogen and sera were from Atlanta Biologicals (Norcross, GA). CHO-K1 (Camp et al., 1993 blue right-pointing triangle), GRP78/BiP-overexpressing CHO-K1 transfectants (Dorner et al., 1992 blue right-pointing triangle), and Fv2E-PERK-expressing CHO-K1 transfectants (Lu et al., 2004 blue right-pointing triangle) were grown in Ham's F-12 plus 10% fetal bovine serum (FBS) without antibiotics. Various control and knockout mouse embryonic fibroblasts (PERK+/+ and PERK−/− [ Harding et al., 2000 blue right-pointing triangle]); IRE1α+/+ and IRE1α−/− [ Urano et al., 2000 blue right-pointing triangle]; XBP1+/+ and XBP1−/− [ Lee et al., 2003 blue right-pointing triangle]; and MPI+/+ [ DeRossi et al., 2006 blue right-pointing triangle]) were cultured in RPMI 1640 medium plus 10% FBS without antibiotics, unless indicated otherwise. However, all siRNA incubations used DMEM plus 10% FBS for more optimal knock-down. Gelatin-coated dishes were used for all cells in experiments involving PERK−/− MEFs treated with DTT or TG, which was necessary to maintain good adhesion of these cells when under ER stress (Shang et al., 2007 blue right-pointing triangle). Phenotypes of MEF lines with homozygous disruptions of the PERK and IRE1α genes were independently verified by the lack of immunologically detectable PERK or IRE1α, and the absence of stress-dependent formation of P-eIF2α or spliced XBP1 mRNA, respectively.

FACE analyses of LLO glycans, free glycans, nucleotide sugars, and monosaccharide phosphates

Published methods were followed (Gao and Lehrman, 2002a blue right-pointing triangle, 2003 blue right-pointing triangle, 2006 blue right-pointing triangle). Briefly, LLOs were recovered in chloroform:methanol:water (10:10:3) extracts, after which glycans were released with mild acid. Free glycans, monosaccharide phosphates, and nucleotide sugars (eventually yielding free neutral hexoses) were recovered in aqueous extracts, and separated by anion exchange. Hexose-1-phosphates and nucleotide sugars were then selectively hydrolyzed to neutral hexoses, leaving hexose-6-phosphates unaffected. Glycans were conjugated with ANDS and separated with oligosaccharide profiling gels, while neutral hexoses and hexose-6-Ps were conjugated with AMAC and resolved with monosaccharide profiling (borate) gels. Where indicated, ANDS-conjugated glycans were digested with endoglycosidase H or jack bean α-mannosidase prior to electrophoresis. Per 107 cells, 5% of the sample for monosaccharide analysis, and 50% of the sample for glycan analysis, was usually loaded per gel lane.

For FACE data analysis, gel images were acquired with a Bio-Rad Fluor-S MultiImager using a 530DF60 filter (Hercules, CA). When necessary, individual bands of ANDS and AMAC conjugates on gels were located and quantified with Quantity One software supplied with the scanner. Alternatively, entire pools of ANDS-conjugated free glycans migrating in the G4–G7 standard range were quantified as a group. For clarity, some images were adjusted with brightness and contrast tools in Microsoft PowerPoint 2003 (Redmond, WA), treating all data from a single gel identically. In some cases, irrelevant lanes were removed by cropping and joining. In many experiments, we only compared samples loaded on the same FACE gel, often limiting the experiments to duplicate determinations, and we therefore present original FACE images and/or means ± error ranges. In experiments with at least three determinations, we report means ± SEM and also p values from two-tailed t tests determined with Graphpad Prism 5 software (La Jolla, CA).

SLO-permeabilized cells

For assessment of Dol-P, monolayers were permeabilized with SLO after the indicated treatments and incubated at 37°C for 20 min with 2 ml transport buffer containing 0.1 μCi UDP-[3H]GlcNAc or 0.2 μCi GDP-[3H]mannose, and 2 mM AMP. Where indicated, 50 μM “control” (Ac-Gln-Tyr-Thr-CONH2) or “acceptor” (Ac-Asn-Tyr-Thr-CONH2) tripeptides for OT were included. [3H]lipids were recovered by extraction with chloroform:methanol (2:1) with aqueous back-washing, evaporated to dryness, and measured by liquid scintillation spectroscopy (Gao and Lehrman, 2002b blue right-pointing triangle). Since our ability to achieve consistent permeabilization across multiple samples in a single experiment was hindered by handling excessive numbers of dishes, it was necessary to limit most treatments to duplicates, in which case we report averages and variance where appropriate.

For separation of lumenal and cytosolic free glycans, cells were permeabilized with SLO, but glycosyltransferase substrates were omitted from the transport buffer. Incubations were for 4 min at 37°C, followed by 15 min on ice.

SLO-permeabilized cells were also used for in vitro LLO cleavage assays with M6P (Gao et al., 2005 blue right-pointing triangle). In addition to the indicated monosaccharides, the reactions (1 h 37°C) included 100 μM UDP-GlcNAc, 200 μM UDP-glucose, and 0.2 μM GDP-mannose to generate LLOs, and 5 μg/ml each of castanospermine and deoxymannojirimycin to inhibit glycosidases.

RNA interference of IRE1α in MEFs

Mouse (NM_023913) ERN1 ON-TARGETplus SMART Pool (L-041030-00-0005) containing four siRNA duplexes targeting GAAAGGUGGUGCACAUCAA (siRNA1); CGUCAUUGCUCGUGAAUUG (siRNA2); UGAACUACUUGAGGAAUUA (siRNA3), and UGACGAAACUUCCCUUUAC (siRNA4) were from Dharmacon (Thermo Fisher Scientific, Lafayette, CO). RNA interference was carried out with Lipofectamine RNAiMAX Transfection Reagent (Invitrogen) according to the manufacturer's instructions, with modifications. Buffer alone or with siRNAs was mixed with ~106 trypsinized MEFs in 100-mm dishes to reach 10 nM siRNA and achieve 30–40% confluence the next day. Cells were passaged 48 h later to 100-mm dishes and grown in siRNA-free media for at least 24 h to achieve 80–90% of confluence. Cells were fed fresh medium at least 1 h prior to receiving additional treatments.

AP20187-responsive ARGENT constructs for IRE1α kinase domain only (aa 468–836) or cytosolic unit (kinase ± RNase domain; aa 468–977)

Two micrograms total MEF RNA was used for first-strand cDNA synthesis with SuperScript First-Strand Synthesis System for RT-PCR (#1904-018; Invitrogen). Of the cDNA, 10% was used to amplify IRE1α inserts with Expand High Fidelityplus PCR System (#03300242001; Roche, Indianapolis, IN) with the primer pairs (based upon Back et al. [2006 blue right-pointing triangle] and NM_023913; SpeI sites underlined in primers listed below): 5′-TTTCCTACTAGTCTGAGCGTGCATCAGCAG-3′ (forward for both constructs) and either 5′-TTTCCTACTAGTCTCCAGGCTCCAGAAGAAGG-3′ (reverse for kinase plus RNase) or 5′-TTTCCTACTAGTGAGGGCATATGGAATCACTG-3′ (reverse for kinase only). Both cDNA fragments were ligated (Rapid DNA Ligation Kit, #11635379001; Roche) into SpeI-digested pC4-Fv1E (a kind gift from Ariad Pharmaceuticals) and transformed into Escherichia coli. Plasmid inserts were screened by SpeI digestion, and orientations were verified by both XhoI digestion and DNA sequencing. Spurious point mutations were corrected with the QuikChange II Site-Directed Mutagenesis Kit (#200523; Stratagene, Agilent Technologies, Santa Clara, California) and resequenced. Plasmids preparation, PCR product purification, and DNA digest extraction were done with Qiagen products (Valencia, CA): Spin Miniprep Kit, PCR Purification Kit, and Gel Extraction Kit.

Selection of stable transfectants

Plasmids encoding the kinase domain only (designated pC4Fv-1E-K, abbreviated pK) or the kinase plus RNase domain (pC4Fv-1E-K+R, pK+R), or the empty vector pC4Fv-1E were cotransfected in 10-fold excess with plasmid pMAM-neo for stable selection into CHO-K1 cells with FuGENE HD Transfection Reagent (#04709691001; Roche). Well-separated single colonies were picked with cloning cylinders after selection with 800 μg/ml G418. Colonies were screened for relative expression levels and sizes of IRE1α fusion proteins by immunoblotting detergent extracts with anti-HA antibody to detect the HA epitope tag fused to the C-termini of the encoded proteins by the pC4Fv-1E vector. The colonies with highest expression levels of kinase only or kinase plus RNase fusion proteins were designated pK5 and pK+R11, respectively, and were used in all experiments presented here (a pK sibling transfectant with fivefold lower levels of fusion protein than pK5 gave a similar response to AP20187, as in Figure 9C).


Cells grown in 100-mm dishes were lysed with 0.3–0.4 ml RIPA buffer (150 mM sodium chloride, 1.0% NP-40, 0.5% sodium deoxycholate, 0.1% SDS, 50 mM Tris, pH 8.0) supplemented with protease inhibitors (Complete Mini Protease Inhibitor Cocktail Tablets, #11836153001; Roche) and phosphatase inhibitors (PhosSTOP, Phosphatase Inhibitor Cocktail Tablets, #04906837001; Roche), one tablet each per 10 ml buffer. After vortexing, lysates were kept on ice for 30 min, then clarified by centrifugation. Protein was measured with a BCA protein assay kit (#23225; Pierce, Thermo Fisher Scientific, Rockford, IL). Lysate protein (15–40 μg) was subjected to SDS–PAGE with single acrylamide concentrations from 6–10%. Proteins were transferred to Protran nitrocellulose membrane (Whatman, Piscataway, NJ), blocked with Tris-buffered saline (TBS)-T (20 mM Tris-Cl, pH 7.6, 137 mM NaCl, 0.1% Tween-20) containing 5% nonfat milk, and probed with antibodies prediluted in TBS-T containing 5% bovine serum albumin (BSA; #001-000-162; Jackson ImmunoResearch Laboratories, West Grove, PA) with overnight incubation at 4ºC. Target proteins were detected with Amersham ECL Western Blotting Detection Reagents (#RPN2109, Amersham, GE Healthcare) and visualized by exposure to X-ray film, scanning with a Bio-Rad Fluor-S MultiImager, and processing with Bio-Rad Quantity-One software.

XBP1 Splicing

Total mRNA (RNeasy; Qiagen, Valencia, CA) isolated after the indicated treatment was used for a PCR-based assay to assess XBP1 mRNA splicing (Shang and Lehrman, 2004 blue right-pointing triangle). PCR products representing spliced XBP1, unspliced XBP1, and a hybrid formed during the chain reaction (denoted with the subscripts S, U, and H, respectively) were resolved by agarose gel electrophoresis.

Measurement of cellular mannosyl phosphate concentrations

Cellular concentrations of M6P were determined in PERK−/− MEFs after quantification from known cell numbers by FACE, and measurement of cellular volume by the [3H]inulin-[14C]urea method (Oehler et al., 1996 blue right-pointing triangle).

HSV-1 methods

HSV-1 strain 17 and Vero cells were obtained from Beth Levine (University of Texas Southwestern Medical Center at Dallas). Virus was propagated and high-titer stocks were prepared with Vero cells (cultured in DMEM plus 10% FBS) by standard procedures. Titers were determined by serial dilution in plaque assays. Infections of MEFs (cultured with RPMI 1640) were initiated with monolayers at ~90% confluence with virus at a multiplicity of 7.5–10, as indicated, over a period of 1 h at 37°C with medium containing 2% heat-inactivated FBS. Infections were then continued by changing to medium with 10% heat-inactivated FBS. Cells were inspected for cytopathic effect 5 h after infection to ensure that the vast majority of cells were infected. All virus infections included 50 μg/ml gentamicin.

Supplementary Material

Supplemental Materials:


This work is supported by NIH grants DK-042394, HL-052173, and HL-057346 to R.J.K.; by NIH grants AI-073898 and GM-056927 to I.M.; by NIH grant R-37-DK047119 and a Principal Research Fellowship from the Wellcome Trust to D.R.; by NIH grant GM-031278 and support from the Robert Welch Foundation to J.R.F.; and by NIH grant GM-038545 and Robert Welch Foundation grant I-1168 to M.A.L. We gratefully acknowledge Pfizer for CP-91149 and Ariad Pharmaceuticals for AP20187 and ARGENT vectors. We thank Laurie Glimcher for XBP1+/+ and XBP1−/− MEFs, Beth Levine and members of her laboratory for instruction on the handling and use of HSV-1, Judith Treadway of Pfizer for advice on GP inhibitors, and Thomas Rutkowski and Joseph Contessa for highly useful comments on the manuscript.

Abbreviations used:

7-amino-1,3-naphthalenedisulfonic acid
acceptor peptide
bovine serum albumin
congenital disorders of glycosylation
dolichol phosphate
endoplasmic reticulum
ER-associated degradation
fluorophore-assisted carbohydrate electrophoresis
fetal bovine serum
representative glycoprotein
glycogen phosphorylase
hours postinfection
herpes simplex virus 1
inositol-requiring enzyme 1
lipid-linked oligosaccharide
mouse embryonic fibroblast
PKR-like ER kinase
small interfering RNA
Tris-buffered saline
unfolded protein response


This article was published online ahead of print in MBoC in Press ( on July 7, 2011.


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