Most cases of CNC are caused by inactivating mutations in the gene encoding one of the subunits of the protein kinase A (PKA) tetrameric enzyme, namely regulatory subunit type 1 alpha (PRKAR1A), located at 17q22–24 (
Stratakis et al., 2001). Although a second locus (2p16) has been implicated, sequencing of the region in the linked families did not reveal alterations in other coding sequences (
Stratakis et al., 1996).
PRKAR1A extends to a total genomic length of approximately 21 kb and consists of 11 exons, encoding a total of 381 AA, assembled in a dimerisation/docking domain, and two cAMP binding domains – A and B. Since the identification of PRKAR1A mutations in CNC, more than 80 disease-causing pathogenic sequence changes have been reported; they are spread all over the coding length of the gene, without a notable preference for a region or exon. Structurally, the vast majority of the mutations consist of base substitutions, small deletions and insertions or combined rearrangements, involving up to 15 bp (
Stratakis et al., 2001); although rare, large PRKAR1A deletions have been reported (
Horvath et al., 2008a).
Mutations in PRKAR1A are seen in more than 70% of the patients with classical CNC and, in the majority of these cases, they lead to complete inactivation of one of the PRKAR1A alleles as a result of premature stop codon generation and subsequent non-sense mediated mRNA decay (NMD) (
Bertherat et al., 2009;
Stratakis et al., 2001). In its inactive form, PKA is a tetramer composed of two regulatory and two catalytic subunits (
Tasken et al., 1997). The decreased cellular concentration of regulatory subunits results in balance shift between the formation and the disassembly of the PKA tetramer, toward the release of the catalytic subunits. The free catalytic subunits, which are active serine-threonine kinases, further phosphorylate a series of targets that regulate downstream effectors enzymes, ion channels, and activate the transcription of specific genes mediating the cell growth and differentiation (
Shabb, 2001). Thus, functionally, the mechanism by which PRKAR1A haploinsufficiency causes CNC is through excess cellular cAMP signaling in affected tissues (
Robinson-White et al., 2006). CNC lesions frequently show loss-of-heterozygosity (LOH) suggesting a tumor-suppressor function for PRKAR1A (
Boikos and Stratakis, 2007;
Stratakis et al., 2001).
Although significantly less frequent, mutations that escape NMD and lead to the expression of an abnormal, defective PRKAR1A protein have been reported (
Groussin et al., 2006;
Horvath et al., 2008a;
Meoli et al., 2008;
Veugelers et al., 2004). These expressed mutations may lead to characteristic phenotype that reflects the location and the type of the genetic change. Examples include a germline ‘in frame’ deletion of exon 3 that results in severe expression of the majority of the CNC manifestations – a phenotype illustrating the importance of exon 3 in linking the dimerisation/docking and the first cAMP binding domain (
Horvath et al., 2008a). In contrast, another ‘in frame’ variant – a splice-site deletion that eliminates exon 7 – is seen associated mostly with lentiginosis and the adrenal component of CNC, primary pigmented nodular adrenocortical disease (PPNAD). Like lentiginosis is the most common non-endocrine CNC manifestation, PPNAD is the most frequently observed endocrine feature of the disease. Thus, the presence of only two features of CNC, and just the common ones, with the described splice site variant is consistent with the anticipation of a milder phenotype associated with certain splice mutations, due to their incomplete penetrance at the mRNA level (etc. not 100% the DNA molecules harboring the splice variant result in mRNA species lacking exon 7) (
Greene et al., 2008;
Groussin et al., 2006;
Veugelers et al., 2004).
Apart from the above mentioned expressed mutant PRKAR1A isoforms, several other expressed isoforms that result from single aminoacid substitutions have been reported (
Greene et al., 2008;
Veugelers et al., 2004). Detailed in vitro analysis of their effects on the protein function revealed important PRKAR1A domain features (
Greene et al., 2008;
Horvath et al., 2008b). The six naturally occurring missense substitutions examined by this study (Ser9Asn, Arg74Cys, Arg146Ser, Asp183Tyr, Ala213Asp, Gly289Trp) are spread all over the functional domains of the protein. Although, as mentioned before, the restricted number of affected individuals by each of these mutations prevented detailed phenotype-genotype analysis, these studies supported the previous suggestion that the alteration of PRKAR1A function alone (not only its complete loss) is sufficient for increasing PKA activity leading to CNC.
Until recently, no genotype-phenotype correlations had been found for the different stop codon mutations that are expected to uniformly lead to lack of the PRKAR1A mutant allele’s protein product in cells. This was because most of the mutations were identified in single patients and only two [c.491_492delTG/p.Val164fsX4, and c.709(−7-2) del6(ttttta)] had been seen in more than three kindreds (
Groussin et al., 2006;
Stratakis et al., 2001). The first study to explore all PRKAR1A mutations found to date against all CNC phenotypes was recently completed: 353 individuals, 258 of whom (73%) positive for a PRKAR1A mutation were studied (
Bertherat et al., 2009). Several features that distinguished PRKAR1A mutation carriers from mutation-negative CNC patients were identified: the former presented more frequently and earlier in life with pigmented skin lesions, myxomas, thyroid and gonadal tumors. In addition, essential correlations between certain genetic defects and the severity and type of CNC manifestations were found. Bertherat et al. outlined subgroups of patients: the first group presented with isolated PPNAD, in some cases accompanied with lentiginosis. In these group, the following tendencies were observed: (1) patients diagnosed before 8 yr of age were rarely carriers of PRKAR1A mutation; (2) most of the patients with isolated PPNAD and presence of PRKAR1A mutation were carriers of either the c.709 (−7-2) del6(ttttta) mutation (P < 0.0001) or the c.1A>G/p.Met1Val substitution affecting the initiation codon of the protein. These observations were in line with previously published reports (
Groussin et al., 2006;
Stratakis et al., 2001) and both mutations are rather unique. Although the molecular mechanism of the Met1Val is not completely clear, it is the only mutation that alters the protein initiation site, and, may in theory, result in alternative initiation (
Kirschner et al., 2000). The splice variant c.709 (−7-2)del6(ttttta) is expected to result in an exon skip, frameshift and premature stop codon generation; however, since it does not affect the two immediate nucleotides on any site of the splice junction, it is expected to take place in less than 100% of the molecules which harbor it, and thus, presumably, to lead to a milder phenotype expression. The fact that a milder phenotype involves only the adrenal and the skin is suggestive of their high sensitivity to changes in PKA activity.
The second group of CNC patients that was suggested to express particular genotype-phenotype correlation was comprised by individuals with myxomas (affecting all locations – skin, heart, and breast), PMS, thyroid tumors, and Large-Cell Calcifying Sertoli Cell Tumor (LCCSCT) – in these patients, PRKAR1A mutations were seen substantially more often. Related to this is the acknowledgment that certain tumors presented at significantly younger age in PRKAR1A mutation carriers: cardiac myxomas (P = 0.02), thyroid tumors (P = 0.03) and LCCSCTs (P = 0.04) (
Bertherat et al., 2009). Another finding among these patients was that mutations that escaped NMD and led to an alternate, usually shorter, protein, were associated with an overall higher total number of CNC manifestations (P = 0.04).
In terms of pigmented skin lesions in CNC, two important correlations have been observed: (1) lentigines (as well as, PMS, acromegaly and cardiac myxomas), were seen significantly more often in CNC patients with exonic PRKAR1A mutations, compared to those with intronic ones (P = 0.04), and, (2) lentigines, (as well as cardiac myxoma and thyroid tumors) associated significantly with the ‘hot spot’ c.491–492delTG mutation compared to all other PRKAR1A defects (P = 0.03). These data add an inestimable value to the understanding the molecular mechanisms of the involvement of PRKAR1A in endocrine and other tumorigenesis and, thus, for genetic counseling and prognosis in CNC families.
Interestingly, a recently described 2.3 Mb deletion in chromosome band 17q24.2–q24.3 that involved, along with other 13 genes, PRKAR1A, resulted in a number of clinical features, including posterior laryngeal cleft, growth restriction, microcephaly and moderate mental retardation. The only CNC manifestation was numerous freckles and lentigines at a young age (
Blyth et al., 2008); the authors called the observed phenotype ‘CNC plus.’
To date, the molecular causes underlying the formation of pigmented skin lesions in CNC are not fully understood. A possible mechanism involves the PKA-mediated activation of pathways downstream of the melanocortin receptors (MCRs) that form a subfamily of the G protein-coupled receptors (GPCRs) and regulate a wide variety of processes, including skin pigmentation (
Abdel-Malek, 2001;
Butler and Cone, 2002;
Gantz and Fong, 2003). The melanocortin 1 receptor (MC1R) is expressed preferentially in epidermal melanocytes and is known as the key regulator of mammalian pigmentation (
Abdel-Malek, 2001;
Kadekaro et al., 2003). MC1R is stimulated by the proopiomelanocortin (POMC)-derived – melanocyte-stimulating hormone (MSH) and adrenocorticotropic hormone (ACTH) and, in turn, activates the rate-limiting enzyme in melanin synthesis, tyrosinase. As a GPCR, MC1R is positively coupled with adenylate cyclase, and its actions are mainly mediated by PKA, in coordination with other signaling molecules involving protein kinase C (PKC) and MAPKs (
Busca and Ballotti, 2000;
Busca et al., 2000;
Tsatmali et al., 2000).