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From:
Published online 2011 June 14. doi: 10.1093/bioinformatics/btr214

Table 1.

Examples of event-describing phrases

Event typePhrase
Gene expressionAlthough resting Jurkat cells expressFas, …
Positive regulationFas mRNA was induced approximately 10-fold in …
Binding… responses induced by CD40engagement.
PhosphorylationDifferential expression and phosphorylation of CTCF, a c-myc
RegulationTranscriptional regulation of the alpha2 integrin gene in …
Negative regulation…, a specific inhibitor of MAPK kinase 1, …

The terms in bold are protein names, and the italicized words are event triggers.