General methods and experimental data.
4-Hydroxybenzyl 2,4,6-trihydroxyphenylketone (1). Phloroglucinol (1.158 g, 9.1 mmol) and 4-hydroxyphenylacetonitrile (1.34 g, 10.0 mmol) in diethyl ether (10 mL) were cooled in an ice bath and saturated with dry HCl gas for 12 h. The precipitate after the addition of diethyl ether was collected and washed further with diethyl ether. The white precipitate thus obtained was refluxed with 2% aqueous HCl (20 mL) for 3 h and cooled. The solution was extracted twice with diethyl ether (20 mL) and the organic layer was neutralized with saturated NaHCO3 solution. Diethyl ether was removed under vacuum, yielding 0.8 g (36%) of yellow solid 1. 1H NMR (DMSO-d6) δ 12.20 (br s, 2H), 10.4 (br s, 1H), 9.20 (s, 1H), 7.05 (d, 2H, J = 8.1 Hz), 6.69 (d, 2H, J = 8.1 Hz), 5.80 (s, 2H), 4.26 (s, 2H); FABMS (m/z): 261 (M+ + 1).
Genistein (2). Dimethylformamide (DMF) (4 mL) was cooled to 10°C and PCl5 (0.46 g, 2.2 mmol) was added in small portions. The mixture was allowed to stand at 55°C for 20 min. The pale pink colored solution containing N, N-dimethyl (chloromethylene) ammonium chloride was then added to the compound 1 (0.385 g, 1.48 mmol) slowly. During the addition the temperature of the reaction mixture was maintained below 27°C. The reaction mixture was then stirred at room temperature for 1 h and then worked up by adding 0.16 mL of boiling HCl (0.1 N) followed by filtering the precipitated product, yielding 0.3 g (77%) of compound 2 (genistein). 1H NMR (400 MHz, DMSO-d6) δ 12.94 (s, 1H), 10.88 (s, 1H), 9.59 (s, 1H), 8.30 (s, 1H), 7.35 (d, 2H, J = 8.7 Hz), 6.80 (d, 2H, J = 8.7 Hz), 6.36 (d, 1H, J = 2.1 Hz), 6.21 (d, 1H, J = 2.4 Hz); FABMS (m/z): 271 (M+ + 1).
7-(2-Bromo-ethoxy)-5-hydroxy-3-(4-hydroxy-phenyl)-chromen-4-one (3). 7-(2-Bromo-ethoxy)-3-[4-(2-bromo-ethoxy)-phenyl]-5-hydroxy-chromen-4-one (4). To the genistein 2 (0.12 g, 0.7 mmol) in DMF (45 mL) was added K2CO3 (0.376 g, 2.7 mmol) followed by 1,2-dibromoethane (3.35 mL, 38.8 mmol) and kept stirring at 100°C for 24 h. DMF was evaporated and the reaction mixture was diluted with ethyl acetate (EtOAc) followed by K2CO3 filtration. The collected organic layer was concentrated and purified by the column chromatography using 60–120 SiO2 mesh with EtOAc:Hexane (1:9), yielding 0.1 g (27%) of product 3 and 0.15 g (50%) of product 4. 1H NMR (400 MHz, DMSO-d6) δ 12.95 (s, 1H), 8.60 (s, 1H), 7.55 (d, 2H, J = 8.4 Hz), 6.70 (br s, 1H), 6.4 (br s, 1H), 4.49-4.46 (t, 2H, J = 6.15 Hz), 4.40-4.36 (t, 2H, J = 6.5 Hz), 3.88-3.82 (q, 4H); FABMS (m/z): 482.7, 484.7 and 486.7 (M, M+ 2, M+ 4) for compound 3, FABMS (m/z): 376.8 (M+ + 1) for compound 4.
7-(2-Azido-ethoxy)-3-[4-(2-azido-ethoxy)-phenyl]-5-hydroxychromen-4-one (5). To the dibromo compound 3 (0.1 g, 0.2 mmol) in DMF (5 mL) was added sodium azide (0.08 g, 1.2 mmol) and continuously stirred for 12 h. DMF was removed and EtOAc was added to the reaction mixture followed by washing with the NH4Cl (conc.) solution. The separated organic layer was concentrated in vacuo and purified by column chromatography using a 60–120 SiO2 mesh with EtOAc: Hexane (3:7) to yield 0.6 g (72%) of product 5. 1H NMR (400 MHz, CDCl3) δ 12.90 (s, 1H), 7.90 (s, 1H), 7.49 (d, 2H, J = 11.7 Hz), 7.29 (s, 1H), 7.1(d, 2H, J = 11.7 Hz), 6.45-6.42(m, 1H), 6.41-6.38 (m, 1H), 4.18-4.09 (m, 4H), 3.57 (t, 4H, J = 16 Hz); FABMS (m/z): 408.9 (M+ + 1).
5-Hydroxy-7-[2-(4-phenyl [1,2,3]triazole-1-yl)-ethoxy]-3-{4- [2-(4-phenyl-[1,2,3]triazol-1-yl)-ethoxy]-phenyl}-chromen-4-one (6). To the diazide 5 (0.03 g, 0.007 mmol) in DMSO-H2O (1:1, V/V, [5 mL]) was added alkyne (0.015 mL, 0.147 mmol) at room temperature followed by the catalytic addition of 1 M CuSO4 and sodium ascorbate, and the reaction was stirred for 20 h. The reaction mixture was diluted with water and the separated organic layer was concentrated and the residue was recrystallized in EtOAc: Hexane (1:1) to yield 32 mg (70%) of the solid compound 6. 1H NMR (400 MHz, CDCl3 + DMSO) δ 12.95 (s, 1H), 8.59 (s, 1H), 8.49 (s, 1H), 8.25 (s, 1H), 7.95-7.90 (m, 4H), 7.55 (d, 2H, J = 9.4 Hz), 7.60-7.20 (m, 4H), 7.35-7.3 (m, 2H), 7.05 (d, 2H, J = 9.4 Hz), 6.65 (d, 1H, J = 2.35 Hz), 6.45 (d, 1H, J = 2.35 Hz), 5.00-4.90 (m, 4H), 4.77-4.55 (m, 4H). FABMS (m/z): 612.9 (M+ + 1).
7-(2-Azido-ethoxy)-5-hydroxy-3-(4-hydroxy-phenyl)-chromen-4-one (7). Bromo compound 4 (0.4 g, 1.06 mmol) in DMF (8 mL) was added to sodium azide (0.2 g, 3.07 mmol) and continuously stirred at room temperature for 12 h. DMF was removed and the reaction mixture was diluted with ethyl acetate and water, and the separated organic layer was concentrated and purified by column chromatography using a 60–120 SiO2 mesh with EtOAc:Hexane (3:7) as eluent to yield 0.26 g (72%) of compound 7 in solid form. 1H NMR (400 MHz, CDCl3) δ 12.90 (s, 1H), 7.89 (s, 1H), 7.42 (d, 2H, J = 8.4 Hz), 6.93(d, 2H, J = 8.4 Hz),6.44-6.41 (m, 1H), 6.41-6.38 (m, 1H), 5.45 (br s, 1H), 4.25 (br s, 1H), 3.75-3.65 (m, 2H). FABMS (m/z): 340 (M+ + 1).
5-Hydroxy-3-(4-hydroxy-phenyl)-7-[2-(4-phenyl-[1,2,3] triazol-1-yl)-ethoxy]-chromen-4-one (8). Azide 7 (0.25 g, 0.73 mmol) in DMSO-H2O (1:1, v/v, 6 mL) was added to alkyne (0.96 mL, 0.88 mmol) at room temperature followed by addition of three drops of 1 M CuSO4, and also catalytic addition of sodium ascorbate and the reaction was stirred for 20 h. The reaction mixture was diluted with water and ethyl acetate, and the separated organic layer was concentrated and purified by column chromatography using 60–120 SiO2 mesh with EtOAc:Hexane (4:6) as eluent to yield 0.2 g (62.5%) of compound 8 as solid.
1H NMR (400 MHz, CDCl3 + 2 drops of DMSO-d6) δ 12.85 (s, 1H), 8.85 (s, 1H), 7.95(s, 1H), 7.82-7.72 (m, 3H), 7.40-7.20 (m, 5H), 6.90-6.80 (m, 2H), 6.35-6.25 (m, 2H), 4.80-4.75 (m, 2H), 4.44-4.39 (m, 2H); FABMS (m/z): 441.9 (M+ + 1).
11-(3-{4-[10-Butyl-methyl-carbamoyl)-decyloxy]-phenyl}-5-hydroxy-4-oxo-4-H-chromen-7-yloxy)-undeconoic acid butylmethyl-amide (9). Genistein 2 (0.25 g, 0.92 mmol) in acetone (50 mL) was added to K2CO3 (0.44 g, 3.1 mmol) followed by the bromo compound shown in (1.23 g, 3.6 mmol) and allowed to reflux for 24 h. The reaction mixture was filtered and acetone was concentrated in vacuo to obtain the crude residue. The residue was concentrated and purified by column chromatography using a 60–120 SiO2 mesh with EtOAc:Hexane (3:7) as eluent to yield 0.39 g (50%) of compound 9 as solid. 1H NMR (400 MHz, CDCl3) δ 12.95 (s, 1H), 7.85 (s, 1H), 7.45 (d, 1H, J = 9.8 Hz), 7.0 (d, 1H, J = 9.8 Hz), 6.45-6.35 (m, 2H), 4.10-3.95 (m, 4H), 3.35 (t, 2H, J = 7.1 Hz), 3.25 (t, 2H, J = 7.1 Hz), 3.0 (s, 3H), 2.95 (s, 3H), 2.35-2.25 (m, 4H), 1.90-1.30 (m, 44H), 1.00-0.85 (m, 6H); FABMS (m/z): 777.3 (M+ + 1).
11-[5, 7-Dihydroxy-3-(4-hydroxy-phenyl)-4-oxo-4H-chromen-2-yl]-undecanoic acid ethyl ester (10). Ethyl 11-(chlorocarbonyl) undecanoate (1.49 g, 5.3 mmol) was added drop-wise to a stirred solution of deoxybenzoin compound 1 (0.35 g, 1.3 mmol) and potassium carbonate (1.2 g, 8.6 mmol) in anhydrous acetone (25 mL) under N2. The reaction mixture was stirred at room temperature for 2 h and then heated at 50°C for 16 h. The solvent was removed and the residue was extracted into ethyl acetate and the base was neutralized with 20% citric acid. The organic layer separated was purified by column chromatography using 60–120 SiO2 mesh with EtOAc:Hexane (1:9) as eluent to yield the oily product 10 (0.46 g, 70.7%). 1H NMR (400 MHz, CDCl3) δ 12.85 (s, 1H), 7.28 (d, 2H, J = 7.2 Hz), 7.20 (d, 2H, J = 7.2 Hz), 6.39 (d, 1H, J = 2.3 Hz), 6.30 (d, 1H, J = 2.3 Hz), 4.20-4.10 (m, 2H), 2.62-2.52 (m, 4H), 2.40-2.30 (m, 4H), 1.50-1.20 (m, 12H), 0.98-0.88 (m, 3H); FABMS (m/z): 483 (M+ + 1).
11-[5,7-Dihydroxy-3-(4-hydroxy-phenyl)-4-oxo-4H-chromen-2-yl]-undecanoic acid (11). 10% aqueous sodium hydroxide (5 mL) was added to the solution of ester 10 (0.45 g, 0.93 mmol) in EtOH (10 mL) and the mixture was stirred at room temperature for 12 h. Ethanol was removed under reduced pressure, and the residue was dissolved in water, cooled to 0°C and acidified to PH 1 with HCl(conc.):H2O(1:1). The aqueous mixture was extracted with ethyl acetate, which was separated, dried, concentrated and purified by column chromatography using a 60–120 SiO2 mesh with EtOAc:Hexane (3:1) as eluent to yield acid 11 (0.46 g, 70.7%). 1H NMR (400 MHz, CDCl3) δ 12.85 (s, 1H), 7.64-7.59 (m, 1H), 7.47-7.44 (m, 1H), 6.98-6.94 (m, 2H), 6.83-6.79 (m, 2H), 2.60-2.30 (m, 4H), 2.20-2.10 (m, 4H), 1.40-1.05 (m, 12H); FABMS (m/z): 455 (M+ + 1).
11-[5,7-Dihydroxy-3-(4-hydroxy-phenyl)-4-oxo-4H-chromen-2-yl]-undecanoic acid butyl-methyl-amide (12). To acid 11 (0.076 g, 0.167 mmol) in anhydrous THF (10 mL) were added DIPEA (0.043, 0.33 mmol) and isobutylchloroformate (0.032 mL, 0.25 mmol) sequentially at −10°C. After 5 min, the amine shown in was added and stirred for 3 h. The solution was then concentrated and purified by column chromatography using a 60–120 SiO2 mesh with EtOAc:Hexane (2:8) as eluent to yield compound 12 (0.029 g, 33%). 1H NMR (400 MHz, CDCl3) δ 12.85(s, 1H), 7.7-7.0 (m, 1H), 7.58-7.53 (m, 1H), 7.32-7.29 (m, 2H), 6.90-6.86 (m, 1H), 6.68-6.65 (m, 1H), 3.40-3.35 (m, 1H), 3.28-3.25 (m, 1H), 2.93 (s, 3H), 2.60-2.55 (m, 2H), 2.32-2.27 (m, 2H), 2.13-2.06 (m, 2H), 1.40-1.20 (m, 18H); FABMS (m/z): (M + Na+: 548).
7-(3-Bromo-propoxy)-5-hydroxy-3-(4-hydroxy-phenyl)-chromen-4-one (13). To genistein 2 (0.3 g, 1.1 mmol) in acetone (50 mL) was added K2CO3 (0.53 g, 3.8 mmol) and 1,3-dibromopropane (8.5 mL, 85.3 mmol) and kept stirring at reflux for 24 h. K2CO3 was filtered and the organic layer was concentrated and purified by column chromatography using a 60–120 SiO2 mesh with EtOAc:Hexane (2:8) as eluent to yield product 13 (0.25 g, 58%). 1H NMR (400 MHz, DMSO-d6) δ 12.95 (s, 1H), 9.65 (br s, 1H), 8.40 (s, 1H), 7.40 (d, 1H, J = 10 Hz), 6.85 (d, 1H, J = 10 Hz), 6.75-6.65 (m, 1H), 6.42–6.48 (m, 1H), 4.15-4.05 (m, 2H), 3.70-3.65 (m, 2H), 2.30-2.20 (m, 2H); FABMS (m/z): 391 (M+ + 1).
7-(3-Azido-propoxy)-5-hydroxy-3-(4-hydroxy-phenyl)-chromen-4-one (14). To a solution of bromo compound 13 (0.16 g, 0.42 mmol) in anhydrous DMF (5 mL) was added sodium azide (0.082 g, 1.26 mmol) at room temperature and stirred continuously for 12 h. DMF was concentrated under reduced pressure with stirring. Ethyl acetate (EtOAc) was added to the reaction and the Ethyl acetate layer was collected and washed with NH4Cl. The separated organic layer was concentrated and purified by column chromatography using a 60–120 SiO2 mesh with EtOAc: Hexane (3:7) as eluent to yield the product 14 as solid (0.130 g, 87.2%). 1H NMR (400 MHz, CDCl3) δ 12.90 (s, 1H), 7.89 (s, 1H) 7.42 (d, 2H, J = 10 Hz), 6.93 (d, 2H, J = 10 Hz), 6.44-6.41 (m, 1H), 6.41-6.38 (m, 1H), 5.45 (br s, 1H), 4.20-4.10 (m, 2H), 3.6-3.5 (m, 2H), 2.14-2.09 (m, 2H); FABMS (m/z): 354 (M+ + 1).
5-Hydroxy-3-(4-hydroxy-phenyl)-7-[3-(4-phenyl-[1,2,3] triazol-1-yl)-propoxy]-chromen-4-one (15). To azide 14 (0.13 g, 0.36 mmol) in DMF-H2O (8 mL) (1:1, v/v) was added alkyne (0.06 mL, 0.55 mmol) followed by the addition of 1 M CuSO4 (3 drops) and a catalytic amount of sodium ascorbate, and the solution was stirred for 12 h. The reaction was then diluted with water and Ethylacetate. The Ethylacetate was concentrated and the compound was recrystallized in a (2:8) EtOAc and hexane mixture to yield compound 15 as solid (0.115 g 70%). 1H NMR (400 MHz, CDCl3 + 5 drops of DMSO-d6) δ 12.9 (s, 1H), 9.20 (s, 1H), 8.30 (s, 1H), 7.9(s, 1H), 7.77-7.22 (m, 2H), 7.3-7.2 (m, 3H), 7.38-7.30 (m, 2H), 6.84-6.78 (m, 2H), 6.35 (br s, 1H), 6.27 (br s, 1H), 4.65-4.55 (m, 2H), 4.10-4.00 (m, 2H), 2.45-2.35 (m, 2H); FABMS (m/z): 456 (M+ + 1).
5-Hydroxy-3-(4-hydroxy-phenyl)-7-[3-(4-p-tolyl-[1,2,3] triazol-1-yl)-propoxy]-chromen-4-one (16). To azide 14 (0.055 g, 0.15 mmol) in DMF (5 mL) was added alkyne (0.04 mL, 0.31 mmol) followed by the addition of 1 M CuSO4 (3 drops) and catalytic amounts of sodium ascorbate, and stirred for 12 h. The reaction mixture was diluted with Ethylacetate and water, the separated organic layer was concentrated and the residue was recrystallized in Ethylacetate and hexane mixture to yield the product 16 (0.05 g 71.14%). 1H NMR (400 MHz, CDCl3 + DMSO-d6) δ 12.70 (s, 1H), 8.90 (s, 1H), 7.74 (s, 1H), 7.10 (s, 1H), 7.58-7.51 (m, 2H), 7.22-7.16 (m, 2H), 7.09-7.04 (m, 2H), 6.78-6.72 (m, 2H), 6.25-6.21 (m, 1H), 4.55-4.45 (m, 2H), 3.95-3.90 (m, 2H), 2,45-2.41 (m, 2H), 2.22-2.20 (m, 3H); FABMS (m/z): 469.9 (M+ + 1).
5-Hydroxy-3-(4-hydroxy-phenyl)-7-[3-(4-methoxyphenyl-[1,2,3]triazol-1-yl)-propoxy]-chromen-4-one (17). To azide 14 (0.026 g, 0.073 mmol) in DMF (5 mL) was added the alkyne (0.019 mL, 0.143 mmol) at room temperature followed by the addition of 1 M CuSO4 (3 drops) and a catalytic amount of sodium-ascorbate. The reaction mixture was diluted with Ethylacetate and water, and the organic layer separated was concentrated and recrystallized in Ethylacetate and hexane mixture to yield product 17 (0.025 g, 71.4%). 1H NMR (400 MHz, CDCl3 + DMSO-D6) δ12.75 (s, 1H), 8.90 (s, 1H), 7.75 (s, 1H), 7.66 (s, 1H), 7.61 (s, 1H), 7.59 (s, 1H), 7.24-7.21 (m, 1H), 7.22-7.0 (m, 1H), 6.8-6.75 (m, 4H), 6.35-6.25 (m, 2H), 3.70 (s, 3H), 2.46-2.43 (m, 2H); FABMS (m/z): 486 (M+ + 1).
(2-(4-[7-(2-tert-Butoxycarbonylamino-ethoxy)-5-hydroxy-4-oxo-4H-chromen-3-yl]-phenoxy)-ethyl)-carbamic acid tert butyl ester (18). To the genistein 2 (0.2 g, 0.74 mmol) in acetone (20 mL) was added K2CO3 (0.35 g, 2.5 mmol) followed by the addition of 0.99 g, 4.4 mmol of the bromide shown in scheme 5. The solution was stirred at room temperature for 24 h. The reaction mixture was filtered, and the filtrate was concentrated to yield the crude residue which was purified by column chromatography using a 60–120 SiO2 mesh with EtOAc:Hexane (2:8) as eluent to yield 120mg (29%) of product 18. 1H NMR (400 MHz, CDCl3) δ 12.90 (s, 1H), 7.90(s, 1H), 7.47 (d, 2H, J = 9.6 Hz), 6.98 (d, 2H, J = 9.6 Hz), 6.44-6.39 (m, 1H), 6.39-6.37 (m, 1H), 5.05 (br s, 2H), 4.15-4.05 (m, 4H), 3.62-3.50 (m, 4H), 1.55-1.41 (br s, 18H); FABMS (m/z): (M + Na+: 578.9).
7-(2-Amino-ethoxy)-3-[4-(2-amino-ethoxy)-phenyl]-5-hydroxy-chromen-4-one (19). Diamine 18 (0.12 g, mmol) in 15 mL of TFA:DCM (2:1) was stirred at room temperature for 12 h. The reaction mixture was concentrated and the crude product was recrystallized in Ethylacetate to yield product 19 (0.053 g 70%) as solid. 1H NMR (400 MHz, CD3OD) δ 8.25 (br s, 1H) 7.55 (d, 2H, J = 10.6 Hz), 7.12 (d, 2H, J = 10.6 Hz), 6.65 (br s, 1H), δ 6.55 (br s, 1H), 4.39-4.33 (m, 2H), 4.33-4.27 (m, 2H), 3.45-3.40 (m, 4H); FABMS (m/z): 357 (M+ + 1).
(1R)-1-(3-(2-(2-(4-(7-(2-(2-(3-((1R)-1-(1-(3,3-dimethyl-2-oxopentanoyl)piperidine-2-carbonyloxy)-3-phenylpropyl)phenoxy) acetamido)ethoxy)-5-hydroxy-4-oxo-4H-chromen-3-yl) phenoxy)ethylamino)-2-oxoethoxy)phenyl)-3-phenylpropyl1-(3,3-dimethyl-2-oxopentanoyl)piperidine-2-carboxylate (20). To a solution of the TFA salt of amine 19 (0.002 g, 0.005 mmol) in DMF (5 mL) were consecutively added 0.005g, 0.01 mmol of the the corresponding acid shown in scheme 5, HOBt (0.001 g, 0.1 mmol), NMM (0.006 mL, 0.05 mmol) and EDCI (0.002 g, 0.01 mmol) and the reaction mixture was stirred for 3 h. The reaction mixture was quenched with aqueous NH4Cl solution and extracted with Ethylacetate. The extract was dried over Na2SO4, filtered and concentrated. The residue was purified by column chromatography using a 60–120 SiO2 mesh and EtOAc/Hexane, (2:8) as eluent to yield amide 20 as a solid (3.0 mg, 43%). 1H NMR (400 MHz, CDCl3) δ 12.85 (s, 1H), 7.85 (s, 1H), 7.50-7.43 (m, 2H), 7.43-7.25 (m, 6H), 7.23-7.11 (m, 6H), 7.03-6.95 (m, 6H), 6.90-6.84 (m, 2H), 6.44-6.40 (m, 1H), 6.40-6.37 (m, 1H), 5.83-5.76 (m, 2H), 5.36-5.32 (m, 2H), 4.58-4.54 (m, 4H), 4.21-4.12 (m, 4H), 3.86-3.78 (m, 4H), 3.73 (s, 1H), 3.43-3.33 (m, 2H), 3.23-3.12 (m, 2H), 2.74-2.54 (m, 4H), 2.42-2.35 (m, 2H), 2.33-2.22 (m, 2H), 2.15-2.05 (m, 2H), 1.80-1.60 (m, 14H), 1.32-1.20 (m, 11H), 0.94-0.84 (m, 6H); FABMS (m/z): 1366 (M+ + 1).