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Logo of nihpaAbout Author manuscriptsSubmit a manuscriptHHS Public Access; Author Manuscript; Accepted for publication in peer reviewed journal;
Clin Cancer Res. Author manuscript; available in PMC 2012 April 1.
Published in final edited form as:
PMCID: PMC3079374

Targeting BRAF in advanced melanoma: a first step towards manageable disease


Melanoma is the deadliest form of skin cancer and its incidence has been increasing. The disease manifests itself as clinically and genetically distinct subgroups, indicating the need for patient-specific diagnostic and treatment tools. The discovery of activating mutations (V600E) in the BRAF kinase in approximately 50% of patients spurred the development of compounds to inhibit aberrant BRAF activity, and the first drug candidate to show promising clinical activity is PLX4032 (also known as RG7204). Most recent clinical data from a phase II trial indicate that PLX4032 causes tumor regression and stabilized disease in >50% of advanced melanoma patients harboring BRAF V600E tumors. These data validate the effectiveness of oncogene-targeted therapy against advanced melanoma and offer hope that the disease can be overcome. However, as melanoma is dynamic and heterogeneous, careful treatment strategies and combination therapies are warranted to obtain long-term clinical effects.


Melanoma constitutes an important medical challenge as it accounts for more than 80% of skin cancer deaths and its incidence has increased over the past decades. This devastating disease arises from the transformation of melanocytes (specialized pigmented skin cells) in which accumulation of mutations in growth regulating genes increase the levels of autocrine/paracrine growth factors, and loss of adhesion receptors cause uncontrolled proliferation, dissemination, and enhanced survival (1). As a result of many of these alterations, the mitogen-activated protein kinase (MAPK) pathway becomes activated in the majority of melanomas; thus, targeting this pathway holds great therapeutic potential.

Indeed, extensive data point to the key role of the classic MAPK pathway, or the RAS/RAF/MEK/ERK axis, in modulating melanoma survival, proliferation, invasion, and angiogenesis. In normal cells, this pathway is turned on by the regulated expression of ligands which bind to cell membrane-bound receptors. These receptors then recruit the small G-protein RAS, allowing its binding to the inner surface of the cell membrane in order to further activate the serine/threonine RAF protein kinase and also potentiate PI3K signaling. The activated RAF kinase phosphorylates and activates the mitogen-activated protein kinase/extracellular signal-regulated kinase kinase (MEK1/2) which further phosphorylates, activates, and allows the translocation of the extracellular signal-regulated kinase (ERK1/2) to the nucleus to regulate gene expression (2, 3). Figure 1 shows a simplified schematic of the classic MAPK pathway and its key effectors.

Figure 1
Simplified schematics of the MAPK and PI3K pathways in melanoma and the clinical compounds available for their inhibition. In the absence of BRAF mutations, receptor tyrosine kinases are activated by their ligands and activate RAS and PI3K. RAS then activates ...

In melanoma, aberrant MAPK signaling is initiated by alterations in membrane receptors, or mutations in downstream effectors such as RAS or RAF (4). NRAS mutations are found in about 20% of melanoma patients, but it is the RAS substrate BRAF which harbors the most frequent mutations in patients' samples (50-70% of cases) (5). Of these mutations, about 80% display a valine to glutamic acid substitution (V600E) causing constitutive kinase activation and about 16% harbor a lysine to valine substitution (V600K) (6, 7). MAPK signaling is required for proliferation of both RAS and RAF-transformed melanocytes as it was shown that RAF and MEK inhibitors decreased ERK activity and blocked their cell cycle progression. While mutant BRAF can act as a potent oncogene in the early stages of melanoma by signaling via MEK and ERK, it is not required in RAS-transformed melanocytes due to intrinsic pathway redundancy (8). Given the large number of melanomas that harbor activating mutations in the BRAF oncogene, and their reliance on BRAF activity, targeted inhibition of this protein became of high interest.

Mutations in MEK are not frequent and ERK mutations have not been identified in melanoma; however, as the MAPK pathway is persistently active in the tumor cells, these effectors can also be targeted. Results show that MEK inhibitors induce significant reduction in melanoma growth in preclinical models (9, 10). Nevertheless, MEK inhibitors have not shown significant clinical efficacy in melanoma clinical trials so far and dose-limiting toxicities were observed (11). Interestingly, inhibitors of BRAF and MEK were reported to have similar transcriptional targets; therefore, MEK inhibitors could be useful in patients with acquired BRAF inhibitor resistance if toxicities can be managed (12).

Interestingly, BRAF V600E mutations are also observed in benign nevi and this suggests that BRAF mutations alone are insufficient for tumorigenesis and additional factors are needed for cancer progression (13). In fact, a mouse genetic model of BRAFV600E/PTEN-/- that mimics melanoma progression indicates that the PI3K pathway also plays an important role in the development of aggressive tumors (14). Crosstalk between the two MAPK and PI3K parallel signaling pathways has been shown and can happen at multiple levels (15-17). In addition, PI3K pathway activity was shown to be increased in melanoma via constitutive activity in AKT3 (18) or through loss of the tumor suppressor phosphatase and tensin homologue deleted on chromosome 10 (PTEN). This occurs through PTEN mutation, deletion or methylation, which also typically coincides with BRAF mutations but not NRAS (19). PTEN loss is found in 5-20% of non-inherited melanomas, and similar to other neoplasia, may regulate inhibition of the MAPK pathway, cell cycle arrest, and survival via effects on Bcl-2 and caspases for example (20). Thus, as melanomas favor the disregulation of both the MAPK and PI3K pathways, their combined targeting has therapeutic merit (Figure 1) (21). Supporting this observation, we and others have previously shown that MAPK pathway inhibitors along with PI3K inhibitors cause apoptosis of melanoma lines even in a three-dimensional, collagen-embedded melanoma culture environment (22, 23). While multiple other signaling pathways may be involved in melanoma oncogenesis, finding which ones are essential for melanoma survival and progression will determine their therapeutic value.

Clinical-Translational Advances

Despite the extensive scientific progress in the melanoma field, treatment of advanced stage melanoma with chemotherapeutics and biotherapeutics rarely have provided response rates higher than 20% (24). This dreary clinical picture is now changing as “personalized therapy” approaches and carefully designed small molecule inhibitors to treat metastatic melanoma are currently under study and being applied to patients with genetically characterized tumors (25).

The discovery that BRAF mutations are found in approximately 50% of melanoma cases (5) provided an opportunity to target a cancer-specific oncogene and develop compounds to curb its aberrant activity. The first clinical drug candidate aimed at inhibiting BRAF activity, sorafenib (Nexavar, Bayer), displayed disappointing results even when combined with chemotherapeutics and is believed to have failed due to its non-specific broad-spectrum kinase inhibitor activity and associated toxicity (26, 27). However, newer, more potent, and especially more specific inhibitors such as PLX4032 (also known as RG7204-Plexxikon/Roche) or its related compound PLX4720, XL281 (Exelixis Inc.), and GSK2118436 (GlaxoSmithKline), provide increasing proof that targeting BRAF in melanoma is a genuine therapeutic approach (Figure 1) (28-30).

The most clinically advanced of these BRAF inhibitors, PLX4032, was developed through structure-guided approaches and is a well tolerated, orally available small molecule inhibitor with selectivity against BRAF mutant cells and tumors (31-33). Groundbreaking clinical results with this compound were unraveled through a Phase I extension study of melanoma patients with BRAF V600E tumors showing that PLX4032 treatment of these metastatic melanomas caused complete or partial tumor regression in 81% of patients (according to the Response Evaluation Criteria in Solid Tumors (RECIST)) (25). Results from the Phase II trial (totaling 132 patients), were recently presented by Dr. Jeffrey Sosman at the 7th International Melanoma Research Congress of the Society for Melanoma Research in Sydney, Australia, and indicate that 52% of patients show tumor size reductions of 30% or more, 82% of patients exhibit either a response (52%) or stable disease (30%), and that the median progression-free survival is 6.2 months (34, 35). Median overall survival is not available yet. New data also suggest that PLX4032 is effective against V600E/K tumors and patients harboring these mutations should be included in future clinical trials (7). In sum, PLX4032 provides the first clinically convincing evidence that a personalized medicine, oncogene-targeted approach is valid for advanced melanoma.

One theory why BRAF inhibitors such as PLX4032 are effective in BRAF mutant tumors and have a greater therapeutic index than MEK inhibitors, is that they do not inhibit ERK activity in normal cells, thus decreasing toxicity (2). Another possible reason for the advantage of BRAF inhibitors over broad MAPK pathway blockade is that BRAF inhibition increases the presentation of melanoma antigens and subsequent recognition by T-lymphocytes, whereas MEK inhibition impairs T-lymphocyte activity (36). These observations must be taken into account for future combination therapies involving immunotherapies. For example, treatment combinations with the recently clinically successful ipilimumab which targets CTLA4 could potentially be beneficial to circumvent drug resistance (37).

Side effects still occur with PLX4032 but are generally manageable. PLX4032 Phase I and II trials report grade 2-3 rashes, photosensitivity, hair loss, fatigue, joint pain, and well differentiated cutaneous squamous-cell carcinomas (SCC in >30% of patients) (25, 34). These lesions were also observed following sorafenib, XL281, and GSK2118436 treatments and appeared on sun-exposed areas, indicating that RAF inhibition may exacerbate conditions associated with pre-existing oncogenic mutations (31). The Phase II study additionally reports the most severe side effects as being abnormal liver function (14% of patients), joint pain/arthritis (11% of patients), and gastrointestinal problems (10% of patients) (34). Hopefully, as we gain a better understanding of PLX4032 and its effects in various patients, some of these side effects will become preventable.

Other mutant BRAF inhibitors are also gaining momentum clinically, such as GSK2118436, and will also be closely monitored by the melanoma field. GSK2118436 is a potent BRAF inhibitor with high selectivity for mutant BRAF compared to the wild type protein. Similar to PLX4032, preclinical data indicate dose-dependent MEK and ERK activity inhibition, and tumor regression in mouse models. In a PhaseI/II study, 60% (18/30) melanoma patients with mutant BRAF had more than 20% tumor reductions by RECIST (30). Unprecedented positive results were also reported at the 35th Congress of the European Society for Medical Oncology (ESMO) by Dr. Georgina Long from Melanoma Institute Australia. These findings show that in a Phase I/II GSK2118436 trial, 9/10 patients with untreated brain metastases had reductions in overall size of their brain lesions (38).

While the ability to inhibit mutant BRAF to cause the regression of metastatic lesions is considered one of the most significant developments in the history of melanoma treatment, it does not provide a complete cure and resistance eventually develops in all patients, even in the initially responsive cases (25). The mechanisms responsible for this acquired resistance are currently being investigated by our group and others and alternative treatment strategies need to be investigated (39). We recently reported that BRAF V600E-mutant melanoma cell lines became resistant to BRAF inhibitors through a RAF kinase switch which allows for reactivation of the MAPK pathway, and thus BRAF-inhibitor resistant cells can remain at least partially sensitive to MEK inhibitors. However, as MEK inhibitors do not induce significant cytotoxicity in BRAF-inhibitor resistant cells, other signaling pathways may be promoting survival of the BRAF-inhibitor resistant cells and combination strategies will be required to successfully target these resistant tumors (40).

Recurrence of initially responsive melanomas may also be due to the selective outgrowth of intrinsically drug resistant cell subpopulations (with or without secondary mutations). So far, there is no evidence that additional BRAF mutations appear as a result of BRAF inhibitor treatment (25). We and others have reported the existence of melanoma cell subpopulations which are phenotypically distinct from the bulk of the tumor cells, notably with respect to cycling time, growth exhaustion, and resistance to stressful environments or drug treatment. This could possibly be due to the activity of histone demethylases (JARID1A and JARID1B) (41, 42). These findings suggest that the use of inhibitors targeting chromatin-modifying elements or other epigenetic modifiers could be useful in combination with mutant BRAF inhibitors in order to prevent resistance and eradicate all tumorigenic cell subpopulations; these studies are currently ongoing.

While PLX4032 and other BRAF-selective inhibitors are showing efficacy for treatment of metastatic melanoma, these compounds should only be administered to patients with BRAF-mutant tumors. Several recent studies have already elegantly described the molecular intricacies and challenges of treating non-BRAF V600E melanomas with a BRAF inhibitor (43-47). Using different strategies and defining distinct mechanisms, all together these studies demonstrate that BRAF inhibitors can induce, rather than inhibit RAF/MEK signaling in NRAS or wild-type BRAF tumors through the formation of RAF dimers, in a RAS-dependent manner. These studies underscore the need to carefully select the right patient populations based on BRAF mutational status before being included in clinical trials with BRAF-selective inhibitors.

Certainly, the issue of RAF isoform switch and complexity within the BRAF/MAPK in acquired and intrinsic resistance can be addressed by inhibiting downstream MAPK pathway effectors such as MEK and ERK. MEK inhibitors such as AZD6244, GSK1120212, and GDC-0973 (XL518) are currently under clinical investigation and could prove beneficial in a greater number of patients, or in melanomas with acquired resistance to BRAF inhibitors for example. However, their use in combinatorial approaches and their effects on genetically distinct patient populations still needs to be carefully examined. Additionally, the availability of newer, more selective, and potent targeted agents give us the opportunity to combine compounds to either inhibit two molecules within one pathway (e.g. BRAF and MEK) or more than one pathway simultaneously (e.g. MEK and PI3K). Figure 1 provides a list of compounds currently being evaluated in clinical trials, some of which are already being evaluated in combination in melanoma (

Pre-clinical studies in models that closely mimic the human tumors, and take into account both the molecular and genetic makeup of the malignant cells as well as incorporate components of the microenvironment are necessary to guide the successful design of future melanoma clinical trials. Indeed, technological advances allow more drug combinations to be screened in medium or large scale assays in vitro, using 3D-tumor models even, in the presence or absence of stromal cells for example. Such screening approaches could prioritize combinations based on the diverse tumors' molecular and genetic backgrounds. Toxic effects, adverse drug interactions, and target inhibition can be more readily assessed in animal models. The emergence of more selective drugs, our better understanding of the mechanism of action of individual compounds, and the elucidation of mechanisms of drug resistance are placing us in a much better position to undertake the challenging task of rationally developing combination strategies to treat patients with advanced melanoma.

Finally, as we gain a better picture of the genetic profile of melanomas, it may be possible in the future to target other melanoma-associated oncogenes, similar to mutant BRAF, upon which the melanomas heavily rely and for which newly designed inhibitors may be effective. In the upcoming years, the Melanoma Genome Project will likely reveal a number of melanoma-relevant mutations, providing new insights into the biology and causation of this cancer, and especially, providing new therapeutic targets. We expect that this approach will lead to disease management for melanoma patients of all genetic classifications.


Sound scientific and clinical data based on mutant BRAF inhibitors are accumulating and indicate that targeting oncogenes in melanoma is a valid therapeutic approach. However, careful selection of patients and combination therapies are warranted as compensatory signaling mechanisms are engaged in most melanomas sooner or later and cause resistance (acquired and intrinsic) to the compounds. Alternative treatment strategies are currently being explored and include the combination of BRAF inhibitors with other MAPK pathway inhibitors, with inhibitors targeting alternative signaling pathways, and with immunotherapies.


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