PMCCPMCCPMCC

Search tips
Search criteria 

Advanced

 
Logo of nihpaAbout Author manuscriptsSubmit a manuscriptNIH Public Access; Author Manuscript; Accepted for publication in peer reviewed journal;
 
Adv Appl Microbiol. Author manuscript; available in PMC Mar 30, 2011.
Published in final edited form as:
PMCID: PMC3066434
NIHMSID: NIHMS280080
Biogenesis of the cell wall and other glycoconjugates of Mycobacterium tuberculosis
Devinder Kaur, Marcelo E. Guerin, Henrieta Škovierová, Patrick J. Brennan, and Mary Jackson*
Mycobacteria Research Laboratories, Department of Microbiology, Immunology and Pathology, Colorado State University, Fort Collins, CO 80523-1682, USA
*Corresponding author: Tel. 970-491-3582; Fax: 970-491-1815; Mary.Jackson/at/colostate.edu
The reemergence of tuberculosis in its present-day manifectations – single, multiple and extensive drug resistant forms and as HIV-TB coinfections – has resulted in renewed research on fundamental questions such as the nature of the organism itself, Mycobacterium tuberculosis, the molecular basis of its pathogenesis, definition of the immunological response in animal models and humans, and development of new intervention strategies such as vaccines and drugs. Foremost among these developments has been the precise chemical definition of the complex and distinctive cell wall of M. tuberculosis, elucidation of the relevant pathways and underlying genetics responsible for the synthesis of the hallmark moities of the tubercle bacillus such as the mycolic acid-arabinogalactan-peptidoglycan complex, the phthiocerol- and trehalose-containing effector lipids, the phosphatidylinositol-containing mannosides, lipomannosides and lipoarabinomannosides, major immunomodulators, and others. In this review, the laboratory personnel that have been the focal point of some to these developments review recent progress towards a comprehensive understanding of the basic physiology and functions of the cell wall of M. tuberculosis.
The latest complete data as assembled by such bodies at the World Health Organization (http://www.who.int/tb/publications/global_report/en/index.html, 2008) indicate an estimated 9.2 million new cases of TB in 2006 (139 per 100,000 population), including 4.1 million new smear-positive cases (44% of the total) and 0.7 million HIV-positive cases (8% of the total). This is an increase from 9.1 million cases in 2005, due to population growth. India, China, Indonesia, South Africa and Nigeria rank first to fifth respectively in terms of absolute numbers of cases. The African Region has the highest incidence rate per capita (363 per 100 000 population). There were an estimated 14.4 million prevalent cases of TB in 2006. There were an estimated 0.5 million cases of multidrug-resistant TB (MDR-TB) in 2006 and an estimated 1.5 million deaths from TB in HIV-negative people and 0.2 million among people infected with HIV.
What is now recognized as a human tragedy of the first order, compounded by the fear of even more wide-spread dissemination of MDR and XDR strains of Mycobacterium tuberculosis, has had the benefit of evoking new interest and resulting research towards a better understanding of the organism and its effects on the host, driven by the need for new diagnostic tools and new intervention strategies, whether chemotherapeutic or immunological. The cell wall of M. tuberculosis, its most distinctive feature and the basis of much of the characteristics of tuberculosis pathogenesis, is a case in point benefitting from this renewed attention.
The envelope of M. tuberculosis consists of two distinct parts; the plasma membrane and the cell wall as such (Brennan and Draper, 1994); the question of a true capsule is controversial (see below). Clearly, M. tuberculosis, especially within a host, is devoid of a classical capsule adhering to the cell with sufficient tenacity to be observed by simple techniques such as negative staining and India ink. On the other hand extracellular materials do exist – glucans, arabinans and arabinomannans and some proteins, mostly reflective of internal structures – representing more of an outer layer than a true capsule (Daffé and Draper, 1998). As for Gram positive bacteria, there probably exists an anatomically and functionally distinct periplasmic space (Matias and Beveridge, 2006). The cell wall and the membrane can readily be mechanically separated and have been studied independently (Crick et al., 2008). Repeated attempts have been made to relate chemical and ultrastructural features and these attempts have been successful as far as the major components and compartments of the cell envelope are concerned, such as those of the insoluble “cell wall core”, namely peptidoglycan, arabinogalactan, and mycolic acids and the plasma membrane. Thus, the images of two electron dense layers separated by a transparent zone are in accord with a typical plasma membrane bilayer. Additional triple-layered images have been attributed to the cell wall proper and these consist of an inner layer of moderate electron density, reflective of mycobacterial peptidoglycan; a wider electron-transparent layer, attributable to the arabinogalactan-mycolic acid complex; and an outer electron opaque layer of extremely variable appearance and thickness, apparently the negatively charged so-called outer “capsular layer” containing mostly polysaccharides, glucans, arabinans and arabinomannans (Lemassu and Daffé, 1994; Ortalo-Magné et al. 1995).
However, the arrangement and distribution of the numerous soluble cell wall entities, such as lipoarabinomannan and lipomannan, the other phosphatidylinositol-containing glycolipids, the phthiocerol- and trehalose-containing lipids, (lipo)proteins, so important to the pathogenesis of M. tuberculosis, are poorly understood. An exception is the elegant topological studies of the MspA porin in the cell wall of Mycobacterium smegmatis and its possible extrapolations to M. tuberculosis (Faller et al. 2004) and, in that context, the clear evidence from cryo-electron tomography of an outermost morphologically symmetrical lipid bilayer, despite the presence of considerable amounts of mycolic acids with their inherently asymmetrical hydrocarbon chains (Hoffmann et al., 2008; Zuber et al., 2008). In this review we present the rather spectacular progress made since the re-emergence of TB as a pressing public health problem, in the chemical definition of the cell wall/envelope of M. tuberculosis, in its assembly and underlying genetics, and functions in the disease induction process.
The cell envelope distinguishes species of the Mycobacterium genus from other prokaryotes. It consists of three major segments: the plasma membrane, the cell wall core and the outermost layer (Fig. 1). The cell wall core is made up of peptidoglycan (PG) in covalent attachment via phosphoryl-N-acetylglucosaminosylrhamnosyl linkage units with arabinogalactan (AG) which is in turn esterified to α-alkyl, β-hydroxy long-chain (C70-C90) fatty acids known as the mycolic acids. The outermost layer consists of a variety of noncovalently attached (glyco)lipids, polysaccharides, lipoglycans and proteins, including pore-forming proteins. In M. tuberculosis, the surface-exposed material of this outer layer, also called capsule, is essentially composed of polysaccharides and proteins with only minor amounts of lipids (Lemassu & Daffé, 1994; Ortalo-Magné et al., 1995). Thus, M. tuberculosis is known to expose a hydrophilic surface.
Figure 1
Figure 1
A current perspective of the cell envelope of Mycobacterium tuberculosis.
Until recently, our view of the cell envelope architecture was essentially based on the model proposed by Minnikin in 1982. In this model, the mycolic acids are packed in a monolayer, parallel to each other, and oriented perpendicular to the plasma membrane. Interspersed somehow are the free lipids of the outer membrane (OM) with their fatty acyl chains intercalating into the mycolic acid layer. It was proposed that the covalently-bound mycolic acids of the cell wall core and the free lipids of the outermost layer form the inner and outer leaflet, respectively, of a highly impermeable asymmetrical bilayer that confers to mycobacteria their characteristic resistance to many therapeutic agents (Minnikin, 1982; Jarlier and Nikaido, 1994). A second model proposed by Rastogi (1991) suggested a similar organization except that the noncovalently-linked lipids form a monolayer that does not intercalate with the mycolic acids. Only recently have developments in microscopy techniques allowed the different layers of the mycobacterial cell envelope to be visualized in their native state (Hoffman et al., 2008; Zuber et al., 2008). Cryo-electron microscopy observations of vitreous sections of M. smegmatis, M. bovis BCG and of the closely related Corynebacterium glutamicum provided direct evidence of the existence of an outer bilayer and periplasmic space in these species. Although these studies confirmed mycolic acids as key components of the OM, the findings that the outer bilayer is apparently symmetric and much thinner than expected from the proposed models led to a significant revision of the current view of the cell envelope’s architecture. In a revised model presented in Fig. 1, similar extractable lipids are present in both leaflets of the OM and the meromycolate chain of bound mycolic acids span the entire hydrophobic region (Hoffman et al., 2008). Another model proposes the meromycolate chains of mycolic acids to be folded upon themselves to create a more compact structure, compatible with the observed thickness of the OM (Zuber et al., 2008).
The outermost compartment of the cell envelope of pathogenic mycobacterial species consists of a loosely-bound structure called capsule (Chapman et al. 1959; Hanks, 1961; Daffé and Draper, 1998). Although mycobacteria shed some of this material in the culture medium during in vitro growth (Ortalo-Magné et al. 1995), capsular components clearly coat in vivo-grown bacteria (Schwebach et al., 2002), probably retained by the phagosomal membrane (Daffé and Draper, 1998). The capsular material primarily consists of proteins and polysaccharides (~ 97% of the total material) with only small amounts of lipids (Lemassu and Daffé, 1994; Ortalo-Magné et al. 1995).
Three types of polysaccharides are found in the capsular material of M. tuberculosis: a high molecular weight (>100,000 Da) α-D-glucan composed of a →4- α-D-Glc-1→ core branched every 5 or 6 residues by oligoglucosides, D-arabino-D-mannan (AM), and a D-mannan composed of a →6- α-D-Man-1→ core substituted at some positions 2 with a α-D-Man residue (Lemassu and Daffé, 1994, Ortalo-Magné et al., 1995; Dinadayala et al., 2004). All are neutral compounds, devoid of acyl substituents (Lemassu and Daffé, 1994). The structure of AM appears to be identical to that of LAM (see section IV. A), except for the loss of the phosphatidyl-myo-inositol anchor, suggesting that it may be formed from LAM by a specific hydrolytic enzyme. However, there is at present no evidence for this hypothesis.
α-D-glucan is the major carbohydrate constituent of the capsule of M. tuberculosis, representing up to 80% of the extracellular polysaccharides. Recent studies have begun to shed light on its biosynthesis. Based on the observation that α-D-glucan displays a glycogen-like structure, the orthologs of the glg genes involved in the biosynthesis of glycogen in Escherichia coli were identified in M. tuberculosis H37Rv and inactivated by allelic replacement. Biochemical analyses of the mutants indicated that the biosynthetic pathways of α-D-glucan and glycogen involve common enzymes, among which the α-1,4-glucosyltransferases Rv3032 and GlgA (Rv1212c) (Table 1), the ADP-glucose pyrophosphorylase GlgC (Rv1213) and the branching enzyme GlgB (Rv1326c) (Sambou et al., 2008) (see section VI. B). The disruption of glgC or glgA reduces by half the capsular α-D-glucan content of M. tuberculosis H37Rv. The involvement of common enzymes in the synthesis of the intracellular glycogen and capsular α-D-glucan suggests that the latter polysaccharide is synthesized inside the cytoplasm before being translocated to the cell surface by as yet unknown transporters.
Table 1
Table 1
The glycosyltransferases of M. tuberculosis
Various biological functions have been associated with the polysaccharides of the capsule suggestive of a role in immunopathogenesis. Cywes et al. showed that capsular polysaccharides, among which the α-D-glucan, mediated the non-opsonic binding of M. tuberculosis H37Rv to Complement Receptor 3 (Cywes et al., 1997). Given that CR3 is one of the principal phagocytic receptors of monocytes and neutrophils and that CR3-mediated phagocytosis can result in the diminution or absence of respiratory burst and suppression of IL-12 secretion, it was proposed that this route of entry may be favourable to the intracellular survival of the tubercle bacillus (Ehlers and Daffé, 1998; Fenton et al., 2005). Other studies have highlighted the anti-phagocytic and immunomodulatory activities of the capsular polysaccharides of M. tuberculosis (Stokes et al., 2004; Gagliardi et al. 2007). Owing to its glycogen-like structure, α-D-glucan was also proposed to be involved in M. tuberculosis evasion of the immune system by molecular mimicry (Lemassu and Daffé, 1994). Independently from its role in tuberculosis, α-D-glucan was reported to exhibit anti-tumor activity (Wang et al., 1995; Zlotta et al., 2000).
A. PHOSPHATIDYLINOSITOL MANNOSIDES, LIPOMANNAN AND LIPOARABINOMANNAN
1. Localization in the cell envelope and biological activities
One of the unique features of the mycobacterial cell envelope is its high content of mannosylated molecules, including (lipo)glycans and (lipo)glycoproteins. The mannosyl-phosphatidyl-myo-inositol-based glycolipids and metabolically-related lipoglycans comprising phosphatidyl-myo-inositol mannosides (PIMs), lipomannan (LM) and lipoarabinomannan (LAM) in particular, are found in abundant quantities in the cell envelope of all mycobacterial species. These molecules are non-covalently anchored through their phosphatidyl-myo-inositol (PI) moiety to the inner and outer membranes of the cell envelope (Pitarque et al., 2008). The importance of these molecules in promoting the entry of M. tuberculosis inside phagocytic cells through mannose-specific C-type lectins, regulating phagosome maturation and modulating the host immune response in vitro has been well documented (for recent reviews, Briken et al., 2004; Fenton et al., 2005; Gilleron et al., 2008). However, care should be taken in the interpretation of these studies since the majority of them have focused on the interactions of purified PIM, LM and LAM with cellular models and, thus, may not accurately reflect the relevance and individual contribution of these glycoconjugates in mycobacterial infections. In support of this assumption, a recent study on isogenic knock-out mutants of Mycobacterium bovis BCG and Mycobacterium marinum deficient in the synthesis of mannose-capped LAM (ManLAM) (see section IV.A.2) revealed only marginal differences between wild-type and mutant strains in terms of uptake by phagocytic cells, phagosome/lysosome fusion, replication in vivo and induction of immune responses in infected animals (Appelmelk et al., 2008). On the other hand, clinical isolates of M. tuberculosis defective in some aspects of the synthesis and exposure of ManLAM at the cell surface were found to display important defects in phagocytosis by human primary macrophages (Torrelles et al., 2008). Further studies are thus clearly required to determine the individual contribution of ManLAM to the pathogenicity of virulent species of the Mycobacterium tuberculosis complex. A better defined role for the most polar forms of PIMs (containing up to six Manp residues) in virulence has recently emerged from the study of an M. tuberculosis pimE mutant deficient in the production of these lipids. The mutant was found to be greatly impaired for replication and persistence in mice and unable to replicate inside murine mouse bone-marrow macrophages (Larrouy-Maumus et al., unpublished results). The impact that polar PIM production has on the permeability of the mycobacterial cell envelope is likely to account, at least in part, for the role of these lipids in intracellular survival (Larrouy-Maumus et al., unpublished results).
Despite nearly two decades of studies, the role of PIM, LM and LAM in the physiology of mycobacteria is less clear. Emerging data suggest that PIMs play important roles in the permeability barrier of the cell envelope, cell membrane integrity and regulation of cell septation and division (Parish et al., 1997; Korduláková et al., 2002; Patterson et al., 2003; Morita et al., 2005; Morita et al., 2006; Larrouy-Maumus et al., unpublished results). The physiological functions of LM and LAM are unknown. While the non-pathogenic species Mycobacterium smegmatis appears to be permissive to a variety of mutations affecting PIM, LM and LAM synthesis, the inability to generate mutants of M. tuberculosis deficient in the acylation of PIMs or LAM synthesis (Goude et al., 2008; Jackson et al., unpublished results) indicates that these molecules probably play a more crucial role in the physiology of the tubercle bacillus than in that of fast-growing Mycobacterium species.
2. Structure of PIM, LM and LAM
PIMs, LM and LAM all share a conserved PI anchor with mannosylation extension at the C-6 position of the myo-inositol (myo-Ins) indicative of a metabolic relationship (for a recent review on the structure of PIM, LM and LAM, see Gilleron et al, 2008) (Fig. 1-2A). The anchor structure is heterogeneous, with variations occurring with respect to the number, location and nature of the fatty acids. The major PIM species are PI-dimannosides (Ac1PIM2 and Ac2PIM2) and PI-hexamannosides (Ac1PIM6 and Ac2PIM6). Ac1PIM2 and Ac1PIM6 contain one fatty acid linked to the Manp residue attached to position 2 of myo-Ins in addition to a diacylglycerol moiety, whereas Ac2PIM2 and Ac2PIM6 contain a fourth fatty acyl chain linked to position 3 of myo-Ins (Fig. 1-2A). LM and LAM possess a mannan core composed on average of 20-25 α(1→6)-linked Manp residues occasionally substituted at C-2 by single Manp units in all mycobacterial species investigated with the exception of M. chelonae which was reported to have branching occurring at C-3 (Guérardel et al., 2002). The length of the mannan core of LM and degree of branching varies depending on the mycobacterial species. Recently, the use of MALDI-TOF mass spectrometry has allowed the precise length of the mannan domains of LM in M. bovis BCG, M. smegmatis and M. tuberculosis H37Rv to be defined (Gilleron et al., 2006; Kaur et al., 2007). A few unanswered questions remain, however, concerning the structure of this molecule. Firstly, it is at present unclear whether the linear and branched portions of the mannan core form distinct domains or whether 2,6-Manp and 6-Manp units intercalate at frequent regular intervals within the chain. Secondly, little is known about the position and number of arabinofuranose (Araf) residues attached to the LM backbone. In the case of LAM, a branched arabinan polymer is further attached to the mannan core and cap motifs decorate the non-reducing termini of the arabinosyl side chains. The arabinan polymer contains about 60 Araf units and consists of a linear α(1→5)-linked Araf backbone punctuated with branched hexarabinofuranosides (Ara6) and linear tetraarabinofuranosides (Ara4). A recent study of the LAM-arabinan of M. smegmatis suggested the occurrence of an Ara18 motif resembling the internal structure of AG arabinan (Shi et al., 2006) (see section V.A.1). However, the length of the terminal extensions linked at the non-reducing ends of this motif seems to vary in LAM-arabinan (Ara18-Ara22) (Shi et al., 2006). The nature of the motifs capping the non-reducing termini of the arabinan domain of LAM differs among mycobacterial species. To date, three types of LAM have been described: mannose-capped LAM (ManLAM) found in M. tuberculosis, M. bovis, M. bovis BCG, M. leprae, M. avium, M. xenopi, M. marinum and M. kansasii; phospho-myo-inositol-capped LAM (PILAM) found in M. smegmatis and M. fortuitum; and non-capped LAM (AraLAM) found in M. chelonae. LAM also differs between species in terms of the presence of recently discovered substitutions such as succinyl group and 5-deoxy-5-methylthio-xylo-furanose (MTX) (Delmas et al., 1997; Treumann et al., 2002; Guérardel et al., 2003; Turnbull et al., 2004; Joe et al., 2006). The fundamentals of how LM and LAM are built-up is unknown, whether on a lipid carrier, growing from the reducing or non-reducing end, being built in blocks that are then put together, assembled on an enzyme complex much like polyketides or growing one glycosyl residue at a time analogous to an N-linked glycan.
3. Biosynthesis of PIMs
a. The early steps of PIM synthesis
The first step in PIM synthesis involves the transfer of a Manp residue from GDP-Manp to the 2-position of the myo-Ins ring of PI to form phosphatidyl-myo-inositol monomannoside, PIM1 (Fig. 2A). We have identified PimA (Rv2610c) as the α-mannosyltransferase (ManT) responsible for this catalytic step (Korduláková et al., 2002). The characterization of PimA and the acyltransferase Rv2611c, which substitutes the 6-OH group of the Manp residue transferred by PimA with a fatty acyl chain, provided evidence that two distinct pathways then lead to the formation of Ac1PIM2 from PIM1 (Fig. 2A) (Korduláková et al., 2003). PimA is essential for the growth of M. smegmatis and M. tuberculosis (Korduláková et al., 2002; Jackson et al., unpublished results). Recently, the crystal structure of PimA from M. smegmatis has been solved (Guerin et al., 2007) (see below) (Table 1). PimB (Rv0557) was originally characterized as an α-ManT responsible for the synthesis of Ac1PIM2 from Ac1PIM1 and GDP-Man in M. smegmatis (Schaeffer et al., 1999). However, the fact that the disruption of pimB did not affect the biosynthesis of PIMs in M. tuberculosis suggested that either compensatory activities existed in the cells or that PimB performed another function in M. tuberculosis (Kremer et al., 2002; Tatituri et al., 2007). Recently, the second mannosylation step in the biosynthesis of PIM in Corynebacterium glutamicum has been shown to be catalyzed by PimB’ (NCgl2106, orthologous to Rv2188c), whereas PimB, now renamed MgtA, was implicated in the synthesis of a novel mannosylated glycolipid (1,2-di-O-C16/C18:1-(α-D-mannosyl)-(1→4)-(α-D-gluco-pyranosyluronic acid)-(1→3)-glycerol) and hypermannosylated “LM-like” variant produced by C. glutamicum (Tatituri et al., 2007; Lea-Smith et al., 2008). Although Rv2188c was able to restore Ac1PIM2 synthesis in the NCgl2106 mutant of C. glutamicum, clear definition of the substrate specificities of Rv2188c in mycobacteria will require its purification to homogeneity and direct demonstration of in vitro ManT activity using purified substrates. Ac1PIM2 can accumulate as an end product or be further modified with an acyl chain and/or additional Manp residues to form higher PIM species, such as Ac1PIM3-Ac1PIM6/Ac2PIM3-Ac2PIM6 or LM and LAM. The ManT PimC from M. tuberculosis strain CDC1551 was shown to catalyze the formation of Ac1PIM3 from GDP-Man and Ac1PIM2 in cell-free extracts (Kremer et al., 2002). However, this enzyme is absent from most M. tuberculosis isolates as well as M. smegmatis suggesting that another as yet unidentified enzyme is involved. Likewise, the ManT that catalyzes the transfer of a Manp residue onto PIM3 to produce PIM4 remains to be identified. A summary of the characterized GTs of M. tuberculosis is provided in Table 1.
Figure 2
Figure 2
Figure 2
Biogenesis of PIM, LM and LAM.
b. The biosynthesis of polar PIMs
PimE (Rv1159) was recently identified as a ManT involved in the synthesis of the most polar forms of PIM bearing α(1→2)-linked terminal Manp residues. PimE belongs to the GT-C superfamily of integral membrane polyprenol-monophospho-sugar-utilizing GTs, suggesting that, in contrast to the ManTs, PimA, PimB, PimB’ and PimC, it probably utilizes polyprenol-phosphomannose (PPM) as a sugar donor and catalyzes Manp transfer on the periplasmic side of the plasma membrane (Berg et al., 2007). The disruption of pimE in M. tuberculosis H37Rv and M. smegmatis resulted in mutants which failed to produce PIM6 (Morita et al., 2006; Larrouy-Maumus et al., unpublished results). Using M. smegmatis cell lysates as an enzyme source, evidence was provided that cell-free extracts from the M. smegmatis pimE-deficient mutant were able to produce PIM intermediates up to PIM4 but not PIM5 and PIM6 (Morita et al., 2006). While this result implicated PimE in at least one α(1→2)-Manp transfer onto PIM4 to form PIM5, the use of M. smegmatis extracts in the assay made it impossible to distinguish whether the transfer of the sixth Manp residue was also the result of PimE or that of another endogenous enzyme. Using a recombinant form of M. tuberculosis PimE produced in E. coli and purified AcPIM4 and PPM as acceptor and donors substrates respectively, we recently showed that PimE catalyzes the formation of one single PIM5 product and not that of PIM6, thereby clearly implicating this enzyme in the transfer of only one Manp residue onto PIM4 to form PIM5 (Larrouy-Maumus et al., unpublished results). The α(1→2) ManT responsible for the transfer of the sixth and last Manp residue in the formation of PIM6 thus remains to be identified. Like PimE, this enzyme is expected to belong to the GT-C superfamily of integral membrane PPM-utilizing GTs.
It is proposed that PIM6 is a terminal product, as it contains two α(1→2)-linked Manp, a structure which is not found in LM or the mannan core of LAM (Khoo et al., 1995). Thus, PIM4 appears as the last common intermediate in the biosynthesis of polar PIMs and LM/LAM. LpqW (Rv1166), a putative lipoprotein, was shown to play a role in regulating polar PIM and LAM biosynthesis in M. smegmatis. Disruption of the lpqW gene of M. smegmatis yielded a mutant with wild-type apolar and polar PIM profiles but unable to make LAM, although it apparently retained the ability to produce LM (Kovacevic et al., 2006). The mutant displayed, however, an unstable phenotype and rapidly recovered the ability to synthesize LAM at the expense of apolar PIM, a property accounted for by the accumulation of secondary mutations in the pimE gene (Crellin et al., 2008). Altogether, results thus suggested that LpqW might function to channel the PIM intermediate, AcPIM4, into LAM synthesis. The crystal structure of the LpqW protein of M. smegmatis has been reported (Marland et al., 2006).
c. Topology of PIM synthesis
As evidenced by the nature of the GTs involved, the biosynthesis of PIM is topologically complex. Whereas the first three mannosylation steps of the biosynthetic pathway involve GDP-Man-dependent GT-B enzymes and occur on the cytoplasmic face of the plasma membrane (Morita et al., 2004; Morita et al., 2005), further steps in the pathway of polar PIMs (PIM4-PIM6), LM and LAM most likely rely upon integral membrane GT-C-type GTs and take place on the extra-cytoplasmic side of the plasma membrane (Besra et al., 1997; Morita et al., 2005; Berg et al., 2007) (Fig. 2A). Such a compartmentalization implies that as yet unidentified transporters/flippases translocate PIM intermediates from the cytoplasmic to the periplasmic side of the plasma membrane. It is at present not clear whether a form of PIM2, PIM3 or PIM4 is translocated (for simplicity, only Ac1PIM3 is shown in Fig. 2A).
Little is known of the mechanisms that govern the interaction of GTs with membranes and/or lipid substrates. Members of GT-B superfamily, to which PimA, PimB, PimB’ and PimC belong, bind membranes using a variety of mechanisms including transmembrane α-helices, amphipathic α-helices and protein-protein interactions (Martinez-Fleites et al., 2006; Miley et al., 2007; Wang et al., 2008). The determination of the crystal structure of PimA from M. smegmatis in complex with the donor substrate GDP-Man and subsequent in vitro studies have shed some light on the molecular mechanisms involved in the very initial steps of PIM synthesis (Guerin et al., 2007) (Fig. 2B). The notion of membrane-association through electrostatic interactions is consistent with the finding of an amphipathic α-helix and surface-exposed hydrophobic residues in the N-terminal domain of PimA. Although the sugar transfer is catalyzed between the mannosyl group of GDP-Man and the myo-Ins ring of the PI acceptor substrate, both fatty acyl chains of PI are absolutely required for the transfer reaction to occur. Further, the fact that PimA was capable to bind mono-disperse PI but that its activity was stimulated by high concentrations of non-substrate anionic surfactants indicated that the reaction requires a lipid-water interface. Altogether, experimental data thus supported a model of interfacial catalysis in which PimA recognizes the fully acylated PI substrate with its polar head within the catalytic cleft and the fatty acid moieties only partially sequestered from the bulk solvent (Guerin et al., 2007). Membrane attachment is likely to be mediated by an interfacial-binding surface located in the N-terminal domain of the protein. Structural changes or allosteric effects are expected to result from this interaction with the membrane and/or the lipid substrate and may be necessary for the formation of a competent enzyme-substrate complex.
A search for possible proteins responsible for flipping PIM intermediates (whether PIM2, PIM3 or PIM4) across the plasma membrane has highlighted two possible candidates in the vicinity of the putative α(1→6) ManT Rv1459c, implicated in the initial steps of the elongation of the mannan core of LM/LAM from PIM in Corynebacterium glutamicum (Mishra et al., 2008) (see Section IV.A.4). Three genes, Rv1458c, Rv1457c and Rv1456c, which are conserved in all Corynebacterinaeae, are apparently translationally coupled with Rv1459c (Wang et al., 2006). These genes encode two ABC-transporter integral membrane proteins, with Rv1458c encoding the putative ATP-dependent binding protein. Rv1458c exhibits remote structural similarities to sugar-binding proteins of ABC carriers, such as the sugar-binding protein of Pyrococcus horikoshii (Marabotti et al., 2004) or the maltose/maltodextrin-binding protein MalK of E. coli (Lu et al., 2005). Rv1457c encodes a permease component of an ABC-2-type transporter, typically involved in the export of drugs and carbohydrates (Reizer et al., 1992). As transmembrane channels of ABC-2-type transporters are either homo- or hetero-oligomers and Rv1456c also displays features of a transporter protein, it is reasonable to assume that Rv1456c forms with Rv1457c a membrane channel coupled to the GT, Rv1459c. On the basis of the altered mycolic acid profile of a Corynebacterium matruchotii transposon mutant carrying an insertion in the Rv1456c-Rv1459c cluster, Wang et al. (2006) proposed one or more of these genes to be involved in mycolic acid transport. However, in light of the recent finding that Rv1459c catalyzes the initial α(1→6) elongation of the mannan core of LM/LAM in C. glutamicum, this change in mycolylation may only have been an indirect consequence of the loss of LM/LAM in this species. Moreover, with our recent data suggesting a different function for Rv1459c in mycobacteria than in corynebacteria (see Section IV.A.4), it has become clear that the further examination of the Rv1456c-Rv1459c cluster directly in mycobacterial species will be required to precisely define the role of these genes in the transport of cell envelope precursors across the plasma membrane.
4. Biosynthesis of LM and LAM
Nothing was known until recently about the enzymes, intermediates and steps involved in the biosynthesis of the mannan backbone of LM/LAM. “Linear LM”, devoid of mannan core α(1→2) branching, has been recognized as a precursor but only through metabolic labeling of cell-free extracts (Besra et al., 1997). Given the complexity of the mannan chain found in LM and LAM, a number of ManTs are expected to be involved in its elongation and branching.
Through genetic and biochemical studies, the membranous GT-C superfamily members relying on polyprenyl-linked sugar donors have emerged as the GTs responsible for much of its synthesis (Dinadayala et al., 2006; Kaur et al., 2006; Kaur et al., 2007; Mishra et al., 2007; Mishra et al., 2008) (Table 1). The NCgl1505 protein of C. glutamicum (MptB; which shares ~ 35 % amino-acid identity with Rv1459c from M. tuberculosis) has been shown to be an α(1→6) ManT involved in the initiation of the mannan core of corynebacterial LM (Misha et al., 2008). Although, Rv1459c and its ortholog in M. smegmatis, MSMEG3120, demonstrated similar α(1→6) ManT activity in cell-free extracts, the facts that these enzymes were not able to restore LM production in the C. glutamicum mutant and that the disruption of MSMEG3120 in M. smegmatis had no effect on LM/LAM synthesis, suggest that Rv1459c and MSMEG3120 may have a distinct function in whole mycobacterial cells. Our recent work on a recombinant strain of M. smegmatis overexpressing Rv1459c tends to support this hypothesis (see section V.A.2). Hence, the α(1→6) ManTs responsible for the initial polymerization steps leading to the mannan backbone of LM from PIM4-PIM5 in mycobacteria is (are) currently unknown.
We and others recently characterized Rv2174 (MptA) as the α(1→6) ManT involved in the latter stages of the elongation of mannan in mycobacteria and corynebacteria (Kaur et al., 2007; Mishra et al., 2007). We also identified Rv2181 as the α(1→2) ManT responsible for the synthesis of the α(1→2) Manp-linked branches, characteristic of the mannan backbone of LM and LAM (Kaur et al., 2006). LM is further arabinosylated to produce LAM in a set of poorly defined reactions involving the GT-C protein, EmbC (Zhang et al., 2003). EmbC is an essential enzyme of M. tuberculosis (Goude et al., 2008). Site-directed mutagenesis of an aspartic acid in the GT-C motif of EmbC led to the abolition of LAM synthesis (Berg et al., 2005). Furthermore, introduction of point mutations in the conserved proline motif of EmbC proximal to the C-terminal domain led to the synthesis of smaller arabinan domains largely devoid of linear Ara4, resembling the arabinan structure of AG (Berg et al., 2005). Altogether, these data suggest that EmbC is most likely a multifunctional protein possessing polymerization and chain length regulating activities in addition to arabinosyltransferase (AraT) activity. The presence of two to three Araf residues attached to the mannan backbone of LM in an M. smegmatis embC knock-out strain (Zhang et al., 2003) suggests the existence of additional AraTs required for arabinan priming/synthesis.
Based on the hypothesis that the Man-capping of ManLAM probably takes place on the periplasmic side of the plasma membrane and on the assumption that the enzymes responsible should be missing from those Mycobacterium spp. devoid of ManLAM (e.g. M. smegmatis), we previously identified the GT-C member MT1671 of M. tuberculosis CDC1551 (orthologous to Rv1635c of M. tuberculosis H37Rv) as responsible for the addition of the first Manp unit of the mannose capping motifs of ManLAM (Dinadayala et al., 2006). However, the extension of this strategy to search for the subsequent α(12) ManTs responsible for the formation of the immunomodulatory di- and tri-mannoside caps of ManLAM failed to identify putative candidates. The only other putative GT-C enzyme devoid of an ortholog in M. smegmatis is Rv3779. However, the encoding gene belongs to an AG biosynthetic gene cluster (Berg et al., 2007). An alternative hypothesis was that the mannoside caps arose from the action of a promiscuous α(12) ManT, such as PimE (Rv1159) or Rv2181, responsible for the transfer of α-1,2-linked Manp units to PIM4 and the mannan backbone of LM and LAM, respectively (Kaur et al., 2006; Morita et al., 2006; Larrouy-Maumus et al., unpublished). Indeed, the α(1→2)-linkages of the di- and tri-Manp units on the non-reducing ends of ManLAM, the terminal mono- and di-Manp units of PIM5 and PIM6, the α(1→2) Manp branching residues of the mannan core of LM/LAM and the di- and tri-mannoside units of the 45-47 kDa glycoprotein of M. tuberculosis, are all identical. Moreover, the enzymes catalyzing the addition of these Manp residues use lipid-linked sugar donors, belong to the GT-C superfamily of GTs, and catalyze the reactions on the extra-cytoplasmic side of the plasma membrane (vanderVen et al., 2005; Kaur et al., 2006; Morita et al., 2006) (Table 1). To investigate this hypothesis, knock-out mutants of pimE and Rv2181 were generated in M. tuberculosis H37Rv. Structural analyses of the LM and LAM variants produced by the M. tuberculosis Rv2181 mutant revealed the presence of but a single Manp residue on the non-reducing arabinan termini of LAM in addition to a complete absence of α(12)-linked Manp branching on the mannan backbones of LM and LAM (Kaur et al., 2008). A novel recombinant strain was constructed in ManLAM-deficient Mycobacterium smegmatis that co-expressed Rv2181 and Rv1635c - the ManT responsible for the addition of the first Manp capping residue of ManLAM. Analysis revealed LAM termini fully capped with di- and tri-Manp motifs in addition to α(12)Manp branching on the mannan backbones of LM and LAM, confirming the involvement of the α(12)ManT Rv2181 in the dual role of Man-capping and mannan-core branching (Kaur et al., 2008). It is intriguing then that the expression of Rv1635c in M. smegmatis yielded a LAM population that had t-Araf residues capped only with a single Manp (Dinadayala et al., 2006), despite M. smegmatis expressing an active ortholog of Rv2181 (MSMEG_4247) (Kaur et al., 2006). Indeed, while MSMEG_4247 from M. smegmatis clearly participated in mannan-core branching, it displayed no detectable Manp-capping activity on ManLAM. The catalytic activity of MSMEG_4247 may be too low to mannosylate this heterologous substrate in addition to the mannan backbone. Alternatively, if LAM-capping has evolved to play a role in host cell interactions, it is tempting to speculate that Rv2181 from M. tuberculosis has acquired the ability to α(1→2)-mannosylate ManLAM while MSMEG_4247 from M. smegmatis has not. Further delineation of the structure-function aspects of Rv2181 is required to understand its role in the biosynthesis of LM and ManLAM.
Interestingly, disruption of pimE in M. tuberculosis H37Rv led to a significant and consistent decrease in the amounts of the dimannoside motif capping ManLAM in addition to the abolition of polar PIM synthesis (Larrouy-Maumus et al., unpublished). Both phenotypes were restored in the complemented mutant strain. Whether PimE is directly or only indirectly involved in ManLAM-capping, however, is at present not clear given the exclusive role Rv2181 seems to be playing in this process (Kaur et al., 2008). Rv2181 and PimE may act jointly in ManLAM capping, as proposed for other mycobacterial GT-Cs involved in the biosynthesis of AG (Khasnobis et al., 2006), the first enzyme playing the predominant role. Clearly, the precise delineation of the functions of PimE will have to await the development of cell-free assays using purified enzyme and substrates.
The biosynthetic origins of the MTX motif linked to t-Manp residues of ManLAM and succinyl residues linked to the arabinan domain of LAM have not yet been determined.
B. ACYLTREHALOSES
The search for virulence factors and immunodominant species-specific antigens in the envelopes of mycobacteria has led to the definition of a remarkable array of glycolipids, among which several families of trehalose-containing lipids and the phenolic glycolipids described in section IV.C.
Trehalose is a simple non-reducing disaccharide of glucose (α-D-Glcp-(1<-> 1)-α-D-Glcp) found in bacteria, yeast, fungi, plants and invertebrates, but not in mammalian cells. It is found free in the cytosol of mycobacteria or esterified to a variety of fatty acyl groups in the OM of their cell envelope. Under its free form, trehalose is thought to function as a storage carbohydrate and as a stress protectant. The acyltrehaloses found in the cell envelope of M. tuberculosis include sulfatides (SL), diacyltrehaloses (DAT), triacyltrehaloses (TAT), polyacyltrehaloses (PAT), trehalose monomycolate (TMM) and trehalose dimycolates (TDM) (Fig. 3). In addition, a few strains of M. tuberculosis, known as Canetti strains, produce highly polar species-specific lipooligosaccharides (LOS) (Daffé et al., 1991) (Fig. 3).
Figure 3
Figure 3
Structures of some trehalose-derived molecules from Mycobacterium tuberculosis.
Mycobacteria are unusual amongst microorganisms in possessing three pathways for trehalose synthesis (de Smet et al., 2000). One pathway involves condensation of glucose-6-phosphate with UDP-glucose to form trehalose-6-phosphate followed by dephosphorylation to release the free disaccharide. These reactions are catalyzed by trehalose-6-phosphate synthase (OtsA, Rv3490) (Pan et al., 2002) and trehalose-6-phosphate phosphatase (OtsB2, Rv3372). The second pathway generates trehalose from glycogen in a two-step mechanism involving the maltooligosyltrehalose synthase (TreY, Rv1653c) and the maltooligosyltrehalose trehalohydrolase (TreZ, Rv1562c). The third pathway consists of the conversion of maltose to trehalose by the trehalose synthase (TreS, Rv0126). While the three pathways are functionally redundant in M. smegmatis (Woodruff et al., 2004), the OtsAB pathway was found to be predominant in M. tuberculosis (Murphy et al., 2005). OtsB2 was demonstrated to be strictly essential for growth in M. tuberculosis (Murphy et al., 2005). Thus, consistent with its pleiotropic role in several other functions than stress protection alone, trehalose is essential for growth of M. tuberculosis (Murphy et al., 2005). In view of the absence of trehalose in mammalian cells and essentiality, the OtsB2 enzyme may provide a useful target for novel drugs.
In TDM, trehalose is esterified by mycolates at positions 6 and 6’. It was proposed that mycolic acids can be transferred via a mycolyl-mannosylphosphoheptaprenol donor (Besra et al., 1994) to trehalose 6-phosphate, arising from the OtsAB pathway, to yield phosphorylated trehalose monomycolate, which then can be dephosphorylated to yield TMM (bearing only one mycolyl chain) (Takayama et al. 2005). The subsequent synthesis of TDM, from two TMM molecules, and the transfer of mycolates to the non-reducing ends of AG have been shown to involve the antigens 85A, 85B, and 85C (Belisle et al. 1997; Jackson et al. 1999). However, the precise functions of these enzymes remain unclear, as is the process through which mycolates are translocated from the cytoplasm where they are synthesized to the cell envelope.
The reactions leading to the acylation of trehalose with short chain fatty acyl substituents and long-chain multi-methyl-branched fatty acids to form SL, DAT, TAT and PAT have not been fully elucidated either. The only two acyltransferases characterized to date are PapA2, involved in the transfer of a palmitoyl group to the 2′-position of trehalose-2-sulfate in SL biosynthesis, and PapA1, apparently responsible for the transfer of the first (hydroxy)phthioceranoyl group onto the product of PapA2 (Kumar et al., 2007). Both acyltransferases are essential for the synthesis of SL-1 (Kumar et al., 2007; Bhatt et al., 2007). The identity and localization of the enzymes responsible for the final acylation steps have yet to be determined. Based on what is known of the biosynthesis of related polyketide-derived lipids known as the phthiocerol dimycocerosates, it is tempting to speculate that the biosynthesis of the entire acyltrehalose molecules takes place on the cytoplasmic side of the membrane and that biosynthesis and translocation are coupled (Jain and Cox, 2005). Alternatively, the accumulation within interior layers of the cell envelope of partially acylated SL intermediates by M. tuberculosis mutants deficient in the membrane transporter MmpL8 could be interpreted as the initial acylation reactions taking place in the cytosol and the remaining in the cell envelope (Converse et al., 2003; Domenech et al., 2004). At present, there is no clear experimental evidence supporting any of these two models.
Sft0 (Rv0295c) was characterized as the sulfotransferase responsible for the formation of the trehalose-2-sulfate moiety of SL (Mougous et al., 2004). The topics of the synthesis of the polyketide or mycolic acid moieties of these molecules are beyond the scope of this review but have been extensively reviewed recently (Jackson et al., 2007; Marrakchi et al., 2008; Natarajan et al., 2008; Guilhot and Daffé, 2008). Likewise, the translocation and biological activities of trehalose esters have been reviewed recently and will thus not be further detailed here (Jackson et al., 2007; Glickman, 2008; Bertozzi and Schelle, 2008; Guilhot and Daffé, 2008).
Although the genetics of the species-specific LOS of M. marinum (Burguière et al., 2005; Ren et al., 2007) has begun to be explored, nothing is known of LOS biosynthesis in the Canetti strains of M. tuberculosis.
C. p-HYDROXYBENZOIC ACID DERIVATIVES AND PHENOLIC GLYCOLIPIDS
Recent interest has focused on the phenolic glycolipids (PGL) produced by some strains of M. tuberculosis. Their structure is presented in Fig. 4. Although their role in the pathogenesis of some W-Beijing isolates has been documented (Reed et al., 2004; Tsenova et al. 2005), most strains of M. tuberculosis do not produce PGL due to a frameshift mutation in the polyketide synthase gene pks15/1, which is required for the assembly of the lipid moiety of the molecule (Constant et al., 2002). However, all M. tuberculosis isolates analyzed to date have retained the ability to produce and secrete p-hydroxybenzoic acid derivatives (p-HBADs)- glycoconjugates which share with PGL the same glycosylated aromatic nucleus (Fig. 4) (Constant et al., 2002). The biosynthesis and biological activities of PGLs and related p-HBADs have been reviewed recently and will thus not be described here (Jackson et al., 2007; Berg et al., 2007; Guilhot et al., 2008; Malaga et al., 2008).
Figure 4
Figure 4
Structures of phenolic glycolipids and p-hydroxybenzoic acid derivatives from M. tuberculosis.
D. MANNOSYL-β-1-PHOSPHOMYCOKETIDES
Mannosyl-β-1-phosphomycoketides consist of a mannosyl-β-1-phosphate moiety identical to that found in mannosyl-β-1-phosphodolichols from mammalian cells and a C30-C34 fully saturated 4, 8, 12, 16, 20-pentamethylpentacosyl unit (Fig. 5) (Matsunaga et al., 2004). They have been found in M. tuberculosis, M. avium and M. bovis BCG but not in the rapidly growing saprophytes, M. phlei, M. fallax and M. smegmatis. Suggestive of a role in pathogenesis, this family of lipids activates human CD1c-restricted T-cells (Matsunaga et al., 2004). With the exception of the polyketide synthase Pks12 which has been found to be required for the production of these lipids (Matsunaga et al., 2004; Chopra et al., 2008) the biosynthetic pathway of mycoketides has not yet been elucidated.
Figure 5
Figure 5
Structure of the predominant mannosyl-β-1-phosphomycoketides from M. tuberculosis H37Rv.
E. GLYCOPROTEINS
The glycosylation patterns of the only two mycobacterial glycoproteins that have been biochemically characterized to date - the MBP83 antigen of M. bovis and the 45-47 kDa (Apa) antigen of M. tuberculosis - indicate that they are modified at threonine residues with one to three α(1→3)- (MBP83) or α(1→2) (Apa) -linked Manp, a glycosylation pattern reminiscent of eukaryotic short-chain mannoproteins (Dobos et al., 1996; Michell et al., 2003). The decorating mannose motifs of Apa have been implicated in various biological activities, including the ability of this protein to induce a delayed-type hypersensitivity response in guinea pigs, stimulate primed T-cells in vitro, and bind C-type lectins such as the surfactant protein A and, potentially, DC-SIGN (Romain et al., 1999; Horn et al., 1999; Pitarque et al., 2005; Ragas et al., 2007).Several other proteins of M. tuberculosis are believed to be glycosylated even though their glycosyl appendages have not been characterized (Espitia et al., 1989; Garbe et al., 1993).
The glycosyltransferases involved in protein glycosylation in M. tuberculosis remain largely unknown. Bioinformatic approaches identified a single M. tuberculosis protein, Rv1002c, sharing amino acid identity with the O-mannosyltransferases of Saccharomyces cerevisiae and a similar hydropathy profile (VanderVen et al., 2005). This integral membrane protein, which belongs to the GT-C superfamily of glycosyltransferases, was shown to catalyze the initial step of the mannosylation of Apa. Moreover, evidence was provided that, analogous to eukaryotic systems, Sec-translocation is required for protein mannosylation in M. tuberculosis. The glycosyltransferases involved in the further elongation of the α(1→2) or α(1→3)-linked oligomannoside motifs have not yet been identified. Our recent work on a knock-out mutant of M. tuberculosis H37Rv deficient in the α(1→2)-mannosyltransferase Rv1159 (PimE) suggests that this enzyme is not involved in the glycosylation of Apa (Larrouy-Maumus et al., unpublished).
A. ARABINOGALACTAN
1. Structure of AG
AG was recognized as the major cell wall polysaccharide of mycobacteria as early as the 1950s. Its apparent function as a whole is the tethering of the mycolic acid layer to the PG. The function of the galactan region beyond where arabinan attaches is unknown, but it was proposed to produce a viscous hydrophilic region between the PG and mycolic acid layers. The most recent model of AG indicates that it contains 125 glycosyl residues in total distributed between a galactan domain made of 30 Galf residues, three arabinan domains each containing 31 Araf residues, and a specific linker unit ensuring its covalent attachment to PG made of a rhamnosyl residue attached to a N-acetylglucosaminosyl-1-phosphate residue (Bhamidi et al., 2008). The galactan of AG is made of a disaccharide repeating unit, [→6-D-Galfβ1→5-D-Galfβ]15. Arabinan chains are attached to O-5 of Galf residues 8, 10 and 12 of galactan. The characteristic non-reducing termini of the arabinan domain of AG consist of an Ara6 motif, Arafβ1→2Arafα1→5(Arafβ1→2Arafα1→3)-Arafα1→5Arafα1→, where position 5 of both the terminal β-Araf and the penultimate 2-α-Araf serve as the anchoring points for the mycolic acids. Under physiological conditions, approximately two-thirds of the Ara6 motifs are mycolylated (McNeil et al., 1991). The inner core of the arabinan domain is essentially made of stretches of α–1,5-linked Araf residues with a critically positioned α–3,5-branch site (Fig. 1). Some of the interior α–3,5-Araf residues are substituted at position 2 with either a non-N-acetylated galactosamine residue or a succinyl residue (Lee et al., 2006; Bhamidi et al., 2008). The inner core of the D-arabinan portion of AG is very similar to that of LAM in that the same linkages of Araf units are found and both structures share an internal Ara18 motif extending from the α–3,5-Araf interior residues (Fig. 1). The interior regions of LAM arabinan, however, have been shown to be more variable in terms of the length of this Araf motif (Ara18- Ara22) (Shi et al., 2006; Bhamidi et al., 2008).
2. AG biosynthesis
The galactan and arabinan domains of AG are synthesized as a unit on a decaprenyl phosphate (Dec-P) carrier lipid before being transferred onto PG by an as yet unidentified ligase (Yagi et al., 2003). The synthesis of AG is thus initiated on a Dec-P molecule with formation of the linker unit, followed by what appears to be the simultaneous addition of Galf and Araf residues (Mikušová et al., 1996; Mikušová et al., 2000; Yagi et al., 2003) (Fig. 6). Many of the enzymes involved in this complex process have been identified. Detailed reviews of the biosynthesis of polyprenyl phosphate have been published (Crick et al., 2001; Barry et al., 2007; Crick and Brennan, 2008; Wolucka et al., 2008). It is predicted that a transferase encoded by Rv1302 (a putative ortholog of WecA) in the genome of M. tuberculosis H37Rv transfers GlcNAc-1-phosphate to Dec-P to form Dec-P-P-GlcNAc (GL-1) (Mikušová et al., 1996; Dal Nogare et al., 1998; McNeil, 1999). This step is followed by the attachment of a rhamnosyl residue to the 3 position of GlcNAc in a reaction catalyzed by WbbL (Rv3265c) to form GL-2, “the linker unit” (Mills et al., 2004). dTDP-Rha, which serves as the Rha donor in this reaction, is synthesized from glucose-1-phosphate through a four-step reaction catalyzed by the α-D-glucose-1-phosphate thymidylyl transferase RmlA (Rv0334) (Ma et al., 1997), the dTDP-D-glucose 4,6-dehydratase RmlB (Rv3464) (Ma et al., 2001), the dTDP-4-keto-6-deoxy-D-glucose 3,5 epimerase RmlC (Rv3465) (Stern et al., 1999) and the dTDP-rhamnose synthetase RmlD (Rv3266c) (Hoang et al., 1999).
Figure 6
Figure 6
Proposed pathway for the biosynthesis of mycobacterial arabinogalactan.
Galf residues are then added to the linker unit from UDP-Galf which originates in UDP-Galp in a reaction catalyzed by UDP-Galp mutase (Glf; Rv3809c) (Weston et al., 1997; Mikušová et al., 2000). UDP-Galp is synthesized from UDP-glucose by UDP-Galp epimerase, likely encoded by Rv3634. The galactosyltransferase Rv3782 (GlfT1) catalyzes the first stages of galactan synthesis transferring the two first Galf residues onto the linker unit (Mikušová et al., 2006; Belánová et al., 2008) while Rv3808c (GlfT2) continues with the subsequent polymerization events (Mikušová et al., 2000; Kremer et al., 2001; Rose et al., 2006; Belánová et al., 2008). GlfT2 is a bifunctional galactosyltransferase that catalyzes the synthesis of the alternating 5- and 6-linked, linear, galactofuran in a processive manner. It is thought to be responsible for the polymerization of the bulk of the galactofuran.
As in the case of LAM, knowledge of the enzymes involved in the elongation of the D-arabinan structures of AG is more limited. Polyprenol-monophosphoryl-β-D-arabinose (DPA) is the only known Araf donor in mycobacteria (Wolucka et al., 1994). It is synthesized from 5-phosphoribose-pyrophosphate (Scherman et al., 1995; Scherman et al., 1996) following four catalytic steps which have been characterized (Huang et al., 2005; Mikušová et al., 2005; Huang et al., 2008). Since DPA is the only known Araf donor, it is expected that the arabinosylation of AG and LAM is catalyzed by membrane-associated polyprenyl-dependent glycosyltransferases (GTs) on the periplasmic side of the plasma membrane (Berg et al., 2007). We and others have recently reported of the potential existence of seventeen such enzymes in M. tuberculosis H37Rv, the implication of twelve of which in the glycosylation of various proteins, glycolipids or polysaccharides has now been established (for a review, Berg et al., 2007; Seidel et al., 2007; Kaur et al., 2007; Mishra et al., 2008; Birch et al., 2008). Arabinofuranosyltransferases characterized to date include AtfA (Rv3792), involved in the transfer of the very first Araf residues to the galactan domain of AG (Alderwick et al., 2006; Shi et al., 2008), the terminal β1,2-capping arabinosyltransferase AtfB (Rv3805c) (Seidel et al., 2007), Rv2673 (AtfC) involved in the α–1,3-branching of the arabinan domain of AG (Birch et al., 2008) and the EmbA and EmbB proteins involved in the formation of the Ara6 motif (Escuyer et al., 2001; Khasnobis et al., 2006). Although EmbA and EmbB, acting alone or as heterodimers, have also been proposed to participate in the α–1,5-elongation of the linear portion of arabinan, experimental evidence for this assumption is still lacking (Bhamidi et al., 2008). Our most recent results suggest that Rv0236c, the largest putative GT-C identified in the genome of M. tuberculosis displays, like Rv2673, α–1,3-branching arabinofuranosyltransferase activity, catalyzing in vitro the transfer of an Araf residue from DPA to a synthetic linear α–1,5-linked Ara5 acceptor. We found the ortholog of Rv0236c in M. smegmatis mc2155 to be an essential enzyme and its activity to be rate-limiting for the synthesis of AG as a whole (Skovierová et al., unpublished results). As proposed earlier for the Emb proteins (Berg et al., 2005; Berg et al., 2007), the large size of Rv0236c (1400 amino acids) suggests that it might have additional functions – e.g., controlling the length of the various interior or exterior segments of the arabinan polymer, acting a scaffold for a multi-enzyme machinery involved in arabinosylation - in addition to the direct transfer of Araf units from a Dec-P-Araf donor. Interestingly, our recent results also indicate that Rv1459c, another GT-C enzyme whose distantly-related ortholog in Corynebacterium glutamicum was shown to be an α–1,6-mannosyltransferase involved in the elongation of PIM2 (Mishra et al., 2008), displays in vitro the same α–1,3-branching arabinosyltransferase activity as Rv2673 and Rv0236c on a synthetic linear α–1,5-linked Ara5 acceptor. In contrast to what has been reported (Mishra et al., 2008), we found the ortholog of Rv1459c in M. smegmatis mc2155 to be essential for growth (Korduláková, Škovierová et al., unpublished). The reason for this discrepancy between the results of these two studies is unknown. The reason for the apparent existence of three non-redundant α–1,3-arabinosyltransferases, Rv2673, Rv1459c and Rv0236c, is at present unclear but could be related to the existence of a multi-protein complex participating in the formation of the arabinan domain or to their different involvement in the branching of the interior or outermost domains of arabinan in AG and/or LAM (Fig. 1). Alternatively, one cannot exclude that under physiological conditions, these enzymes participate in the α–1,5 elongation rather than in the branching of the arabinan domains of AG and LAM. Indeed, although elongating α–1,5 arabinofuranosyltransferase activities - some of which apparently unrelated to the Emb proteins - have been detected in cell-free assays using mycobacterial cell wall preparations and synthetic linear or branched arabinan acceptors (Lee et al., 1997; Lee et al., 1998; Zhang et al., 2007), the identity of the responsible enzymes remains to be determined. Likewise, the enzymes responsible for the transfer of the galactosamine and succinyl residues onto some of the interior α–3,5-Araf residues of arabinan are not yet known.
The fact that the addition of Galf and Araf residues appears to occur simultaneously makes it unclear whether polymerization events leading to the formation of AG take place inside or outside the plasma membrane. While the involvement of GT-C enzymes in the polymerization of the arabinan domain clearly points to the periplasmic localization of arabinan formation, the donor of Galf residues in galactan synthesis is a nucleotide sugar expected to be cytoplasmic. The fact that the data leading to the conclusion of simultaneous galactosylation and arabinosylation events were generated using cell-free assays in which the natural topology of the membrane was disrupted may be the basis of this apparent discrepancy. In that case, the transporters involved in the translocation of the galactan polymer synthesized inside the cytosol to the periplasm remain to be identified.
Interestingly, many of the genes involved in the biogenesis of the galactan and arabinan domains of AG and LAM, the formation of mycolic acids and the transfer of mycolates onto AG or trehalose are clustered in a region of the M. tuberculosis chromosome often refered to as the “cell wall biosynthetic cluster” (Fig. 7). This cluster also carries a number of as yet uncharacterized sugar-modifying enzymes and transporters.
Figure 7
Figure 7
A schematic representation of the M. tuberculosis H37Rv cell wall biosynthetic gene cluster (Rv3779-Rv3809c) encompassing genes involved (or likely to be) in the biosynthesis of mycolic acids (accD4, pks13, fadD32, fbpD, fbpA), arabinogalactan (glfT1, (more ...)
3. AG biosynthesis and drug discovery
The inhibitory activity of ethambutol, a first line anti-TB drug shown to target the Emb proteins, first illustrated the essentiality of AG in M. tuberculosis and other mycobacteria (Lee et al., 1995; Belanger et al., 1996). Other studies have since provided genetic evidence of the essentiality of multiple steps of the biogenesis of AG (Barry et al., 2007). Genes found to be essential in M. tuberculosis or M. smegmatis include those involved in the biogenesis of Dec-P (Eoh et al., 2007), the formation of dTDP-Rha (Ma et al., 2002; Li et al, 2006), the linker unit (Mills et al., 2004), the UDP-Galf mutase gene Rv3809c (Pan et al., 2001), the galactosyltransferase genes Rv3782 and Rv3808c (Pan et al., 2001), and the arabinosyltransferase or putative arabinosyltransferase genes embA, embC, Rv3792 (atfA), Rv1459c and Rv0236c (Shi et al., 2008, Amin et al., 2008; our unpublished results).
In view of the absence of most of the biosynthetic pathway of AG in mammalian cells and essentiality, there is considerable interest in exploiting several of the enzymes of this pathway as therapeutic targets. The few drug discovery enzyme assays that have been designed and the target enzymes whose crystal structures have been determined have recently been reviewed (Brennan and Crick, 2007; Barry et al., 2007; Wolucka, 2008).
B. PEPTIDOGLYCAN
Two opposing models of the secondary structure of the mycolyl-AG-peptidoglycan complex (mAGP) have been proposed and reviewed (Crick et al., 2008). One predicts that the PG and galactan are parallel to the plasma membrane (McNeil and Brennan, 1991). This orientation is consistent with traditional models of the PG structure; however, other modeling studies suggest that the PG and AG strands may be coiled and perpendicular to the plane of the plasma membrane (Dmitriev et al., 1999, 2000). Recently, the relevant studies on the secondary structure of PG in Gram-negative bacteria were reviewed (Vollmer and Holtje, 2004) and the preponderance of data appears to favour the parallel model in these organisms, but the perpendicular model recently gained support from the three dimensional solution structure of a synthetic fragment of the cell-wall as determined by NMR. These results indicate that the glycan backbone of the synthetic PG fragment forms a right-handed helix with a periodicity of six sugar residues, leading the authors to conclude that the glycan strand of PG is orthogonal to the plane of the membrane in vivo as opposed to the parallel hypothesis (Meroueh et al., 2004). Thus, the overall structure and topology of the mAGP complex in Mycobacterium spp. remains open to debate as does the three dimensional structure of PG in other eubacteria.
The detailed primary structure of the PG of Mycobacterium spp. has been reviewed many times, as recently as 2008 (see Crick et al., 2008) (Fig. 8). PG is a complex polymer forming a rigid layer outside the plasma membrane providing cellular shape and the strength to withstand osmotic pressure, as well as a scaffold for the structures described above (Fig. 1). PG from M. tuberculosis has been classified as A1γ as has that of Escherichia coli and Bacillus spp. according to the classification system of Schleifer and Kandler (1972) and is composed of linear chains of N-acetyl-α-D- glucosamine (GlcNAc) and modified muramic acid (Mur) substituted with peptide side-chains that are heavily cross-linked providing added structural integrity to the bacterium; the overall degree of cross-linking is 70-80% in Mycobacterium spp. (Matsuhashi, 1966) compared to 50% in E. coli (Vollmer and Holtje, 2004). The tetrapeptide side chains of PG consist of L-alanyl-D-isoglutaminyl-meso-diaminopimelyl-D-alanine (L-Ala-D-Glu-A2pm-D-Ala) with the Glu and A2pm being further amidated (Adam et al., 1969; Kotani et al., 1970; Lederer et al., 1975; Petit et al., 1969; Wietzerbin-Falszpan et al., 1970). About two thirds of the peptide cross-links found in M. tuberculosis PG are between the carboxyl group of a terminal D-Ala and the amino group at the D-center of A2pm resulting a D,D bond (Wietzerbin et al., 1974) and approximately one third of the peptide cross-links occur between the carboxyl group of the L-center of one A2pm residue and the amino group of the D-center of another A2pm residue forming a L,D-cross-link (Wietzerbin et al., 1974). L,D-cross-links are relatively rare, but recently have also been reported in the PG of Streptomyces spp., Clostridium perfringens (Leyh-Bouille et al., 1970) and stationary phase E. coli (Goffin and Ghuysen, 2002; Templin et al., 1999). In addition, in mycobacterial PG some of the Mur residues are N-acylated with glycolic acid (MurNGlyc) rather than N-acetylated (MurNAc) (Mahapatra et al., 2000, 2005a; Raymond et al., 2005) and the hydroxyl moiety of C-6 of some of the Mur residues forms phosphodiester bonds to C-1 of MurNGlyc which in turn is (1→3) linked to a α-L-rhamnose (Rha) residue providing the “linker unit” between the galactan of AG and PG (McNeil et al., 1990).
Figure 8
Figure 8
Structure of a representative monomer of mycobacterial PG prior to peptide trimming. R1, N-glycolylmuramic acid residue of another monomer; R2, N-acetylglucosamine residue of another monomer; R3, H or the linker unit of AG; R4, H, COCH3 (N-acetyl) or (more ...)
In terms of PG biosynthesis, the arrangement of genes responsible for PG synthesis in M. tuberculosis is similar to that in other bacteria (Mahapatra et al., 2000), and in all probability, so is the biochemistry (Mahapatra et al., 2005b). Hence, the excellent reviews on bacterial PG synthesis, in general (Van Heijenoort 1994, 1996, 1998, 2001a, 2001b) are applicable. However, there are some unusual aspects related to PG synthesis in mycobacteria. As noted above, the glycan chains are composed of alternating units of β 1→4 linked GlcNAc, MurNAc and MurNGlyc, whereas, most other bacteria contain N-acetylmuramic acid. The oxidation of the N-acetyl group to N-glycolyl is catalyzed by a recently identified enzyme designated NamH (Raymond et al., 2005). Although there is no indication that this modification is essential for M. tuberculosis survival, M. smegmatis mutants devoid of namH show increased sensitivity to β-lactams and lysozyme (Raymond et al., 2005). In addition, the free carboxylic acid groups of the A2pm or D-isoglutamic acid residues of mycobacterial PG may be amidated, and some of the free carboxylic groups of the D-isoglutamic acid residues may also be modified by the addition of a glycine residue in peptide linkage (Adam et al., 1969). The importance of these modifications to the survival of the bacillus awaits identification of the enzymes responsible.
A. POLYMETHYLATED POLYSACCHARIDES
Polymethylated polysaccharides (PMPS) are unusual carbohydrates unique to the order Actinomycetales. Although all mycobacteria were originally thought to produce two classes of them, the 3-O-methylmannose polysaccharides (MMPs) and the 6-O-methylglucose lipopolysaccharides (MGLPs), our preliminary evidence suggests that MMPs may be restricted to fast-growing mycobacterial spp. and thus, absent from M. tuberculosis (Stadthagen et al., 2007). MGLPs and MMPs were first isolated from M. phlei, M. smegmatis and M. tuberculosis in Dr. Clinton Ballou’s laboratory (Lee and Ballou, 1964; Lee, 1966; Gray and Ballou, 1971) and much of the information we have about these molecules comes from early work from this group. A remarkable property associated with PMPS is their ability to form stable 1:1 complexes with long-chain fatty acids and acyl-coenzyme A derivatives and to regulate the activity of Fatty Acid Synthase I in vitro (reviewed in Bloch et al., 1977). These findings have led to the suggestion that they may be important regulators of lipid metabolism in mycobacteria. Physiological evidence for this assumption is however lacking.
The MGLPs of M. tuberculosis are cytoplasmic lipopolysaccharides of intermediate size containing up to 20 sugar units, many of which are partially O-methylated. The structure of MGLPs from the closely related species M. bovis BCG has been characterized in detail (Tuffal et al., 1998a) (Fig. 9A). The fact that both MMPs and MGLPs are composed of hexose units predominantly or exclusively in α-(1→4)-linkage confers on these molecules a proclivity to assume the helical conformation characteristic of amylose. The fact that many of these hexoses are partially O-methylated further confers on the molecules a slight hydrophobicity. These structural features in turn confer on PMPS the ability to form complexes with fatty acyl chains (Machida and Bloch, 1973; Yabusaki and Ballou, 1978; Yabusaki et al., 1979; Maggio, 1980; Hindsgaul and Ballou, 1984; Tuffal et al., 1998b), accounting for their unique regulatory roles on fatty acid metabolism in vitro (Bloch, 1977; Yabusaki and Ballou, 1979; Forsberg et al., 1982). Only in recent years has the genetics of the biosynthesis of MGLPs in M. tuberculosis begun to be explored. Two gene clusters have been described which seem to carry much of the genes required for the glucosylation, acylation and methylation steps of these molecules (Stadthagen et al., 2007; Sambou et al., 2008; Kaur et al., unpublished results). The glucosyl-3-phosphoglycerate synthase from M. tuberculosis (Rv1208) and ortholog in M. avium subsp. paratuberculosis (MAP2569c), which likely catalyze the first glucosyl transfer in the pathway (Empadinhas et al., 2008), have been crystallized and the structure of the latter enzyme solved without substrate and in complex with the donor substrate, UDP-Glc (Fulton et al., 2008a, Fulton et al., 2008b; Gest et al., 2008). The structure of the protein displays the typical organization of GT-A fold enzymes with a conserved DxD motif that coordinates a Mg2+ ion (Fig. 9B). Current knowledge of the biosynthesis and genetics of MGLPs in M. tuberculosis has recently been reviewed and we would like to refer the reader to this publication (Jackson and Brennan, 2008).
Figure 9
Figure 9
Methylglucose lipolysaccharides.
B. GLYCOGEN
Glycogen is an intracellular polysaccharide which serves as a major carbohydrate reserve in most bacteria. Glycogen content in mycobacteria, including M. tuberculosis, was shown to vary with growth phase and nitrogen concentration in the medium (Antoine and Tepper, 1969a,b; Elbein and Mitchell, 1973). Furthermore, the constant recycling of this molecule during exponential phase seems to be essential for growth of M. smegmatis (Belanger and Hatfull, 1999).
The structure of glycogen is almost undistinguishable from that of the capsular α-D-glucan described earlier (see section III). Recently, the application of analytical centrifugation and dynamic light scattering to α-D-glucan and glycogen purified from M. bovis BCG indicated, however, that the α-D-glucan possessed a slightly higher molecular mass (13 × 106 versus 7.5 × 106 Da) and was more compact than glycogen (Dinadayala et al., 2008).
Not surprisingly, the biosynthetic pathways of glycogen and α-D-glucan share common enzymes (see section III) (Sambou et al., 2008). Two partially redundant α-1,4-glucosyltransferases, GlgA (Rv1212c) and Rv3032, apparently participate in the elongation of glycogen in M. tuberculosis although in whole cells Rv3032 seems to be the main enzyme affected to this task (Sambou et al., 2008). The molecular mechanisms underlying the preferred involvement of GlgA and Rv3032 in one or the other pathway is at present not known. Rv3032 is also involved in the elongation of the MGLPs described above (Stadthagen et al., 2007). GlgB (Rv1326c) was identified as the branching enzyme and reported to be essential for growth (Garg et al., 2007; Sambou et al., 2008). To our knowledge, this is the first glycogen-branching enzyme reported to be essential in a prokaryotic organism. The reason of its essentiality in the tubercle bacillus is unknown. As GlgB seems to be the only branching enzyme committed in the synthesis of α-D-glucan and glycogen, its essentiality may be related to the physiological requirement of M. tuberculosis to produce at least one of these two polysaccharides. This assumption is also supported by the inability to generate a double glgA/Rv3032 knock-out of M. tuberculosis (Sambou et al., 2008). By analogy with glgB mutants of E. coli (Lares et al., 1974), one may also speculate that a deficiency in GlgB could lead to the accumulation of poorly water-soluble linear polymers of 4-linked α-glucosyl residues, either in the cytosol or in the periplasmic space of the cell envelope, causing the death of the bacterium. The fact that significant amounts of α-D-glucan and glycogen were still produced by an ADP-Glc pyrophosphorylase glgC mutant of M. tuberculosis H37Rv indicates that the GlgC-dependent ADP-Glc pathway is not the only route to glycogen/glucan synthesis in M. tuberculosis H37Rv. Other as yet unidentified enzymes with low sequence similarity to the usual prokaryotic ADP-Glc pyrophosphorylases may exist in M. tuberculosis. It is also possible that one of the two α-1,4-glucosyltransferases, Rv3032 or GlgA, utilizes UDP-Glc instead of ADP-Glc as the sugar donor in the elongation reactions. A recent study has implicated the trehalose synthase, TreS, of M. smegmatis in the (reversible) utilization of trehalose for the production of glycogen, in addition to its role in the interconversion of trehalose and maltose (Pan et al., 2008). The TreS enzyme of M. tuberculosis is likely to function similarly. Finally, the presence of a putative amylomaltase gene (Rv1781c, malQ) in the M. tuberculosis genome suggests that this bacterium might have the ability to synthesize α-1,4-glucans when grown on maltose or maltodextrin (Preiss and Romeo, 1989).
C. MYCOTHIOL
Mycothiol is a low-molecular-weight thiol produced by Actinobacteria whose primary role is to maintain a reducing environment in the cells which is necessary for standard metabolic activities to occur. It also represents a stabilized form of cysteine which is required for protein and CoA synthesis in the cells. Mycothiol has been shown to protect mycobacteria against oxidative stress, alkylating stress, acid stress and a broad range of antibiotics (Fig. 10A) (for a review, Newton et al., 2008; Rawat et al., 2002; Buchmeier et al., 2003; Buchmeier et al., 2006a; Rawat et al., 2007; Miller et al., 2007). Like glutathione in Gram-negative bacteria and eukaryotes, mycothiol also serves as an enzyme cofactor (Rawat and Av-Gay, 2007; Newton et al., 2008) and it is thus thought that either mycothiol or mycothiol-dependent proteins account for the protection of mycobacteria against oxidants and other toxic agents (Rawat and Av-Gay, 2007).
Figure 10
Figure 10
Mycothiol.
Mycothiol biosynthesis proceeds through a five-step pathway. N-acetylglucosaminylinositol phosphate is the product of the UDP-GlcNAc:1L-myo-Ins-1-P α-N-acetylglucoaminyltransferase MshA (Rv0486), a nucleotide-sugar utilizing GT-B glycosyltransferase (Newton et al., 2003; Newton et al., 2006a). An unidentified phosphatase dephosphorylates this molecule to yield N-acetylglucosaminylinositol (GlcNAc-Ins) (Newton et al., 2006a). Deacetylation of GlcNAc-Ins by the deacetylase MshB (Rv1170) yields 1-D-myo-inosityl-2-deoxy-α-D-glucopyranoside (GlcN-Ins) (Newton et al., 2000; Newton et al., 2006b) which is then linked to cysteine by the ATP-dependent ligase MshC (Rv2130c) to yield Cys-GlcN-Ins (Sareen et al, 2002). The final step of the pathway is the conversion of Cys-GlcN-Ins to acetyl Cys-GlcN-Ins (mycothiol) by the acetyltransferase MshD (Rv0819) (Koledin et al., 2002).
Gene disruption studies initially showed that mshA and mshC are essential for the growth of M. tuberculosis, thereby implicating mycothiol as vital components of the tubercle bacillus (Sareen et al, 2003; Buchmeier and Fahey, 2006). This assumption was recently questioned when spontaneous isoniazid and ethionamide-resistant mutants of M. tuberculosis carrying mutations in mshA and deficient in mycothiol production were found to display a wild-type growth phenotype in vitro and in mice (Vilchèze et al., 2008). The reason for this discrepancy is unknown but could be due to the different M. tuberculosis strains used in the two studies or to the ability of the spontaneous mutants to produce undetectable but sufficient amounts of mycothiol to sustain growth. mshB and mshD are clearly not essential in M. tuberculosis as knock-out mutants still produced significant amounts of mycothiol and biosynthetically-related thiol compounds (Buchmeier et al., 2003; Buchmeier et al., 2006). In view of the absence of mycothiol in mammalian cells and potential essentiality, the MshA and MshC proteins may represent attractive targets for novel anti-TB drugs. Consistently, the crystal structures of MshB and MshD from M. tuberculosis and MshA from the closely related Corynebacterium glutamicum have been determined and inhibitors of MshB and MshC have been reported (Newton et al., 2006c; Metaferia et al., 2007).
The catalytic mechanism of ‘retaining’ GTs that leads to retention of the anomeric sugar binding is still a matter of debate and controversy. A double-displacement mechanism via the formation of a covalent glycosyl-enzyme intermediate was first proposed. However, in the absence of direct evidence of a viable covalent intermediate, an alternative mechanism was suggested, the SNi ‘internal return’ (Lairson et al., 2008). The crystal structure of MshA (CgMshA, pdb code 3C4V), solved in the absence of substrates and in complex with UDP and Ins-P, has shed some light into the catalytic mechanism of ‘retaining’ GTs (Fig. 10B) (Vetting et al, 2008). Vetting and co-workers (2008) proposed a substrate-assisted mechanism, in which the β-PO4 of UDP-N-acetylglucosamine promotes the nucleophilic attack of the 3-hydroxyl group of Ins-P and assists in the cleavage of the sugar-nucleotide bond.
From this comprehensive review one can see that the primary biosynthetic pathways responsible for the synthesis of the individual entities of the cell wall of M. tuberculosis have been defined or are nearing so and the roles of the individual enzymes and genes in the processes are known. Certainly this general statement applies to the syntheis of peptidoglycan, much of the arabinogalactan, the mycolic acids, LAM, the phthiocerol and trehalose-containing lipids and glycolipids. In these respects the next great challenges are the definition of the mechanisms of assembly of the final mAGP complex, precisely the enzymology and genetics of the ligation of peptidoglycan to the arabinogalactan and recognition of the juncture at which mycolic acids are attached to the complex. Beyond these challenges are the issues of the assembly of the whole, a topic still to be faced in the case of cell wall assembly of the better studied Gram positive and Gram negative bacteria. Nevertheless, the elegant studies on the assembly of Gram negative LPS provides a paradigm for such future studies (Raetz and Whitfield, 2002). For instance completion of the Smooth-LPS molecule involves the ligation of the O-polysaccahride to the nascent Lipid A-Core and these events are located on the periplasmic face of the inner membrane, and the waaL gene product may be solely responsible for this ligation. Moreover the central role of MsbA in the delivery of the Lipid A-Core to the periplasmic face is now well recognized. Already searches in the M. tuberculosis genomes for homologs of such as the msbA gene, an ABC transporter, are under way. Likewise from the literature on LPS deposition (Raetz and Whitfield, 2002), we know of the roles of, for instance, WecA, WbbE and F, in the assembly of O polysaccharides in a synthase-dependent pathway, and the necessity that the O-polysaccharide be still in its polyprenyl-linked format. Thus, we speculate that the AG complex of M. tuberculosis is exported to the cell wall in an equivalent form perhaps mediated by WecA, WbbE and F homologs. Thus, despite impressive progress over the past 20 years in our understanding of the biogenesis of the cell wall of M. tuberculosis, the challenges remaining are substantial. Yet, this avenue of research is particularly pressing in light of the present day reality of drug resistant TB and the need for new antidotes. Enzymes located beyond the cytoplasmic membrane involved in unique assembly mechanisms offer great promise as new therapeutic target with novel mechanisms of action.
Acknowledgements
The authors wish to thank Dr. Jana Korduláková (Comenius University, Bratislava, Slovakia) for sharing unpublished results. Figure 1 was adapted from a figure generously provided by M. Scherman and Dr. M. McNeil (Colorado State University). Research conducted in the authors’ laboratory was supported by grants from the NIH-NIAID (AI064798 and AI018357) and Colorado State University’s Infectious Disease SuperCluster.
Abbreviations
PGpeptidoglycan
PPMpolyprenol-monophospho-mannose
PIphosphatidyl-myo-inositol
PIMsphosphatidyl-myo-inositol mannosides
LMlipomannan
LAMlipoarabinomannan
Galpgalacto-pyranose
Galfgalacto-furanose
myo-Insmyo-Inositol
Manpmanno-pyranose
Arafarabino-furanose.

PIM is used to describe the global family of PIM that carries one to four fatty acids and one to six Manp residues. In AcXPIMY, x refers to the number of acyl groups esterified to available hydroxyls on the Manp or myo-inositol residues, y refers to the number of Manp residues; e.g. Ac1PIM6 corresponds to the phosphatidylinositol hexa-mannoside PIM6 carrying two acyl groups attached to the glycerol (the diacylglycerol substituent) and one acyl group esterified to the Manp residue.
  • Adam A, Petit JF, Wietzerbin-Falszpan J, Sinay P, Thomas DW, Lederer E. Mass spectrometric identification of N-glycolylmuramic acid, a constituent of Mycobacterium smegmatis walls. FEBS Lett. 1969;4:87–92. [PubMed]
  • Alderwick LJ, Seidel M, Sahm H, Besra GS, Eggeling L. Identification of a novel arabinosyl transferase (AtfA) involved in cell wall arabinan biosynthesis in Mycobacterium tuberculosis. J. Biol. Chem. 2006;281:15653–15661. [PubMed]
  • Amin AG, Goude R, Shi L, Zhang J, Chatterjee C, Parish T. EmbA is an essential arabinosyltransferase in Mycobacterium tuberculosis. Microbiology. 2008;154:240–248. [PMC free article] [PubMed]
  • Antoine AD, Tepper BS. Characterization of glycogens from mycobacteria. Arch. Biochem. Biophys. 1969;134:207–213. [PubMed]
  • Antoine AD, Tepper BS. Environmental control of glycogen and lipid content of Mycobacterium tuberculosis. J. Bacteriol. 1969;100:538–539. [PMC free article] [PubMed]
  • Appelmelk BJ, den Dunnen J, Driessen NN, Ummels R, Pak M, Nigou J, Larrouy-Maumus G, Gurcha SS, Movahedzadeh F, Geurtsen J, Brown EJ, Eysink Smeets MM, Besra GS, Willemsen PTJ, Lowary TL, van Kooyk Y, Maaskant JJ, Stocker NG, van der ley P, Puzo G, Vandenbroucke-Grauls CMJE, Wieland CW, van der Poll T, Geijtenbeek TBH, van der Sar AM, Bitter W. The mannose cap of mycobacterial lipoarabinomannan does not dominate the Mycobacterium-host interaction. Cell Microbiol. 2008;10:930–944. [PubMed]
  • Barry CE, Crick DC, McNeil MR. Targeting the formation of the cell wall core of Mycobacterium tuberculosis. Infectious Disorders Drug Targets. 2007;7:182–202. [PubMed]
  • Belanger AE, Besra GS, Ford ME, Mikušová K, Belisle JT, Brennan PJ, Inamine JM. The embAB genes of Mycobacterium avium encode an arabinosyl transferase involved in cell wall arabinan biosynthesis that is the target for the antimycobacterial drug ethambutol. Proc. Natl. Acad. Sci. USA. 1996;93:11919–11924. [PubMed]
  • Belanger AE, Hatfull GF. Exponential-phase glycogen recycling is essential for growth of Mycobacterium smegmatis. J. Bacteriol. 1999;181:6670–6678. [PMC free article] [PubMed]
  • Belanová M, Dianišková P, Brennan PJ, Completo GC, Rose NL, Lowary TL, Mikušová K. Galactosyl transferases in mycobacterial cell wall synthesis. J. Bacteriol. 2008;190:1141–1145. [PMC free article] [PubMed]
  • Belisle JT, Vissa VD, Sievert T, Takayama K, Brennan PJ, Besra GS. Role of the major antigen of Mycobacterium tuberculosis in the cell wall biogenesis. Science. 1997;276:1420–1422. [PubMed]
  • Berg S, Kaur D, Jackson M, Brennan PJ. The glycosyltransferases of Mycobacterium tuberculosis- roles in the synthesis of arabinogalactan, lipoarabinomannan, and other glycoconjugates. Glycobiology. 2007;17:35R–56R. [PubMed]
  • Berg S, Starbuck J, Torrelles JB, Vissa VD, Crick DC, Chatterjee C, Brennan PJ. Roles of the conserved proline and glycosyltransferase motifs of EmbC in biosynthesis of lipoarabinomannan. J. Biol. Chem. 2005;280:5651–5663. [PubMed]
  • Bertozzi CR, Schelle MW. Sulfated metabolites from Mycobacterium tuberculosis: Sulfolipid-1 and beyond. In: Daffé M, Reyrat J-M, editors. The mycobacterial cell envelope. ASM Press; Washington DC: 2008. pp. 291–304.
  • Besra GS, Morehouse CB, Rittner CM, Waechter CJ, Brennan PJ. Biosynthesis of mycobacterial lipoarabinomannan. J. Biol. Chem. 1997;272:18460–18466. [PubMed]
  • Besra GS, Sievert T, Lee RE, Slayden RA, Brennan PJ, Takayama K. Identification of the apparent carrier in mycolic acid synthesis. Proc. Natl. Acad. Sci. USA. 1994;91:12735–12739. [PubMed]
  • Bhamidi S, Scherman MS, Rithner CD, Prenni JE, Chatterjee D, Khoo K-H, McNeil MR. The identification and location of succinyl residues and the charcaterization of the interior arabinan region allows for a model of the complete primary structure of Mycobacterium tuberculosis mycolyl arabinogalactan. J. Biol. Chem. 2008;283:12992–13000. [PubMed]
  • Bhatt K, Gurcha SS, Bhatt A, Besra GS, Jacobs WR., Jr. Two polyketide-synthase-associated acyltransferases are required for sulfolipid biosynthesis in Mycobacterium tuberculosis. Microbiology. 2007;153:513–520. [PubMed]
  • Birch HL, Alderwick LJ, Bhatt A, Rittmann D, Krumbach K, Singh A, Bai Y, Lowary TL, Eggeling L, Besra GS. Biosynthesis of mycobacterial arabinogalactan: identification of a novel α(1->3) arabinofuranosyltransferase. Mol Microbiol. 2008;69:1191–1206. [PMC free article] [PubMed]
  • Bloch K. Control mechanisms for fatty acid synthesis in Mycobacterium smegmatis. In: Meister A, editor. Adv. Enzymol. Relat. Areas Mol. Biol. Vol. 45. John Wiley & sons; New-York: 1977. pp. 1–84. [PubMed]
  • Brennan PJ, Draper P. Ultrastructure of Mycobacterium tuberculosis. In: Bloom BR, editor. Tuberculosis: Pathogenesis, Protection and Control. ASM Press; Washington, D.C.: 1994. pp. 271–284.
  • Brennan PJ, Crick DC. The cell-wall core of Mycobacterium tuberculosis in the context of drug discovery. Current Topics in Medicinal Chemistry. 2007;7:475–488. [PubMed]
  • Briken V, Porcelli SA, Besra GS, Kremer L. Mycobacterial lipoarabinomannan and related lipoglycans: from biogenesis to modulation of the immune response. Mol. Microbiol. 2004;53:391–403. [PubMed]
  • Buchmeier N, Fahey RC. The mshA gene encoding the glycosyltransferase of mycothiol biosynthesis is essential in Mycobacterium tuberculosis Erdman. FEMS Microbiol Lett. 2006;264:74–79. [PubMed]
  • Buchmeier N, Newton GL, Fahey RC. A mycothiol synthase mutant of Mycobacterium tuberculosis has an altered thiol-disulfide content and limited tolerance to stress. J. Bacteriol. 2006;188:6245–6252. [PMC free article] [PubMed]
  • Buchmeier NA, Newton GL, Koledin T, Fahey RC. Association of mycothiol with protection of Mycobacterium tuberculosis from toxic oxidants and antibiotics. Mol. Microbiol. 2003;47:1723–1732. [PubMed]
  • Burguière A, Hitchen P, Dover LG, Kremer L, Ridell M, Alexander DC, Liu J, Morris HR, Minnikin DE, Dell A, Besra GS. LosA, a key glycosyltransferase involved in the biosynthesis of a novel family of glycosylated acyltrehalose lipooligosaccharides from Mycobacterium marinum. J. Biol. Chem. 2005;280:42124–42133. [PubMed]
  • Chapman GB, Hanks JH, Wallace JH. An electron microscope study of the disposition and fine structure of Mycobacterium lepraemurium in mouse spleen. J. Bacteriol. 1959;77:205–211. [PMC free article] [PubMed]
  • Chopra T, Banerjee S, Gupta S, Yadav G, Anand S, Surolia A, Roy RP, Mohanty D, Gokhale RS. Novel intermolecular iterative mechanism for biosynthesis of mycoketide catalyzed by a bimodular polyketide synthase. PLoS Biology. 2008;6:1584–1598. [PMC free article] [PubMed]
  • Constant P, Pérez E, Malaga W, Lanéelle M-A, Saurel O, Daffé M, Guilhot C. Role of the pks15/1 gene in the biosynthesis of phenolglycolipids in the Mycobacterium tuberculosis complex. J. Biol. Chem. 2002;277:38148–38158. [PubMed]
  • Converse SE, Mougous JD, Leavell MD, Leary JA, Bertozzi CR, Cox JS. MmpL8 is required for sulfolipid-1 biosynthesis and Mycobacterium tuberculosis virulence. Proc. Natl. Acad. Sci. USA. 2003;100:6121–6126. [PubMed]
  • Crellin PK, Kovacevic S, Martin KL, Brammananth R, Morita YS, Billman-Jacobe H, McConville MJ, Coppel RL. Mutations in pimE restore lipoarabinomannan synthesis and growth in a Mycobacterium smegmatis lpqW mutant. J. Bacteriol. 2008;190:3690–3699. [PMC free article] [PubMed]
  • Crick DC, Brennan PJ. Biosynthesis of the arabinogalactan-peptidoglycan complex of Mycobacterium tuberculosis. In: Daffé M, Reyrat J-M, editors. The mycobacterial cell envelope. ASM Press; Washington, DC: 2008. pp. 25–40.
  • Crick DC, Mahapatra S, Brennan PJ. Biosynthesis of the arabinogalactan-peptidoglycan complex of Mycobacterium tuberculosis. Glycobiology. 2001;11:107R–118R. [PubMed]
  • Cywes C, Hoppe HC, Daffé M, Ehlers MRW. Nonopsonic binding of Mycobacterium tuberculosis to human complement receptor type 3 is mediated by capsular polysaccharides and is strain dependent. Infect. Immun. 1997;65:4258–4266. [PMC free article] [PubMed]
  • Daffé M, Draper P. The envelope layers of mycobacteria with reference to their pathogenicity. Advances in microbial physiology. 1998;39:131–203. [PubMed]
  • Daffé M, McNeil MR, Brennan PJ. Novel type-specific lipooligosaccharides from Mycobacterium tuberculosis. Biochemistry. 1991;30:378–388. [PubMed]
  • Dal Nogare AR, Dan N, Lehrman MA. Conserved sequences in enzymes of the UDP-GlcNAc/MurNAc family are essential in hamster UDP-GlcNAc:dolichol-P GlcNAc-1-P transferase. Glycobiology. 1998;8:825–832. [PubMed]
  • De Smet KAL, Weston A, Brown IN, Young DB, Robertson BD. Three pathways for trehalose biosynthesis in mycobacteria. Microbiology. 2000;146:199–208. [PubMed]
  • Delmas C, Gilleron M, Brando T, Vercellone A, Gheorghiu M, Rivière M, Puzo G. Comparative structural study of the mannosylated-lipoarabinomannans from Mycobacterium bovis BCG vaccine strains: characterization and localization of succinates. Glycobiology. 1997;7:811–817. [PubMed]
  • Dinadayala P, Kaur D, Berg S, Amin AG, Vissa VD, Chatterjee D, Brennan PJ, Crick DC. Genetic basis for the synthesis of the immunomodulatory mannose caps of lipoarabinomannan in Mycobacterium tuberculosis. J. Biol. Chem. 2006;281:20027–20035. [PubMed]
  • Dinadayala P, Lemassu A, Granovski P, Cérantola S, Winter N, Daffé M. Revisiting the structure of the anti-neoplastic glucans of Mycobacterium bovis bacille Calmette-Guérin. J. Biol. Chem. 2004;279:12369–12378. [PubMed]
  • Dinadayala P, Sambou T, Daffé M, Lemassu A. Comparative structural analyses of the alpha-glucan and glycogen from Mycobacterium bovis. Glycobiology. 2008;18:502–508. [PubMed]
  • Dmitriev BA, Ehlers S, Rietschel ET. Layered murein revisited: a fundamentally new concept of bacterial cell wall structure, biogenesis and function. Med. Microbiol. Immunol. (Berl) 1999;187:173–181. [PubMed]
  • Dmitriev BA, Ehlers S, Rietschel ET, Brennan PJ. Molecular mechanics of the mycobacterial cell wall: From horizontal layers to vertical scaffolds. Int. J. Med. Microbiol. 2000;290:251–258. [PubMed]
  • Dobos KM, Khoo KH, Swiderek KM, Brennan PJ, Belisle JT. Definition of the full extent of glycosylation of the 45-Kilodalton glycoprotein of Mycobacterium tuberculosis. J. Bacteriol. 1996;178:2498–2506. [PMC free article] [PubMed]
  • Domenech P, Reed MB, Dowd CS, Manca C, Kaplan G, Barry CE., III The role of MmpL8 in sulfatide biogenesis and virulence of Mycobacterium tuberculosis. J. Biol. Chem. 2004;279:21257–21265. [PubMed]
  • Empadinhas N, Albuquerque L, Mendes V, Macedo-Ribeiro S, da Costa MS. Identification of the mycobacterial glucosyl-3-phosphoglycerate synthase. FEMS Microbiol. Lett. 2008;280:195–202. [PubMed]
  • Ehlers MRW, Daffé M. Interactions between Mycobacterium tuberculosis and host cells: are mycobacterial sugars the key? Trends in Microbiology. 1998;6:328–335. [PubMed]
  • Elbein AD, Mitchell M. Levels of glycogen and trehalose in Mycobacterium smegmatis and the purification and properties of the glycogen synthetase. J. Bacteriol. 1973;113:863–873. [PMC free article] [PubMed]
  • Eoh H, Brown AC, Buetow L, Hunter WN, Parish T, Kaur D, Brennan PJ, Crick DC. Characterization of the Mycobacterium tuberculosis 4-diphosphocytidyl-2-C-methyl-D-erythitol synthase: potential for drug development. J. Bacteriol. 2007;189:8922–8927. [PMC free article] [PubMed]
  • Escuyer VE, Lety M-A, Torrelles JB, Khoo K-H, Tang J-B, Rithner CD, Frehel C, McNeil MR, Brennan PJ, Chatterjee C. The role of the embA and embB gene products in the biosynthesis of the terminal hexaarabinofuranosyl motif of Mycobacterium smegmatis arabinogalactan. J. Biol. Chem. 2001;276:48854–48862. [PubMed]
  • Espitia C, Mancilla R. Identification, isolation and partial characterization of Mycobacterium tuberculosis glycoprotein antigens. Clin. Exp. Immunol. 1989;77:378–383. [PubMed]
  • Faller M, Niederweis M, Schulz GE. The structure of a mycobacterial outer-membrane channel. Science. 2004;303:1189–1192. [PubMed]
  • Fenton MJ, Riley LW, Schlesinger LS. Receptor-mediated recognition of Mycobacterium tuberculosis by host cells. In: Cole ST, Davis Eisenach K, McMurray DN, Jacobs WR Jr., editors. Tuberculosis and the tubercle bacillus. ASM Press; Washington, DC: 2005. pp. 405–426.
  • Forsberg LS, Dell A, Walton DJ, Ballou CE. Revised structure for the 6-O-methylglucose polysaccharide of Mycobacterium smegmatis. J. Biol. Chem. 1982;257:3555–3563. [PubMed]
  • Fulton Z, Crellin PK, Brammananth R, Zaker-Tabrizi L, Coppel RL, Rossjohn J, Beddoe T. Expression, purification, crystallization and preliminary X-ray characterization of a putative glycosyltransferase of a GT-A fold found in mycobacteria. Acta Cryst. 2008a;F64:428–431. [PMC free article] [PubMed]
  • Fulton Z, McAlister A, Wilce MCJ, Brammananth R, Zaker-Tabrizi L, Perugini MA, Bottomley SP, Coppel RL, Crellin PK, Rossjohn J, Beddoe T. Crystal structure of an UDP-glucose specific glycosyltransferase from a Mycobacterium species. J. Biol. Chem. 2008b;283:27881–27890. [PubMed]
  • Gagliardi MC, Lemassu A, Teloni R, Mariotti S, Sargentini V, Pardini M, Daffe M, Nisini R. Cell wall-associated alpha-glucan is instrumental for Mycobacterium tuberculosis to block CD1 molecule expression and disable the fucntion of dendritic cells derived from infected monocyte. Cell Microbiol. 2007;9:2081–2092. [PubMed]
  • Garbe T, Harris D, Vordermeier M, Lathigra R, Ivanyi J, Young D. Expression of the Mycobacterium tuberculosis 19-Kilodalton antigen in M. smegmatis: immunological analysis and evidence of glycosylation. Infect. Immun. 1993;61:260–267. [PMC free article] [PubMed]
  • Garg SK, Alam MS, Kishan KVR, Agrawal P. Expression and characterization of α-(1,4)-glucan branching enzyme Rv1326c of Mycobacterium tuberculosis H37Rv. Protein Expr. Purif. 2007;51:198–208. [PubMed]
  • Gest P, Kaur D, Pham HT, van der Woerd M, Hansen E, Brennan PJ, Jackson M, Guerin ME. Preliminary crystallographic analysis of GpgS, a key glucosyltransferase involved in methylglucose lipopolysaccharide biosynthesis in Mycobacterium tuberculosis. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 in press. [PMC free article] [PubMed]
  • Gilleron M, Jackson M, Nigou J, Puzo G. Structure, activities and biosynthesis of the Phosphatidyl-myo-Inositol-based lipoglycans. In: Daffé M, Reyrat J-M, editors. The Mycobacterial Cell Envelope. ASM Press; Washington, DC: 2008. pp. 75–105.
  • Gilleron M, Nigou J, Nicolle D, Quesniaux V, Puzo G. The acylation state of mycobacterial lipomannans modulates innate immunity response through toll-like receptor 2. Chem. Biol. 2006;13:39–47. [PubMed]
  • Glickman MS. Cording, cord factors and trehalose dimycolate. In: Daffé M, Reyrat J-M, editors. The mycobacterial cell envelope. ASM Press; Washington DC: 2008. pp. 63–73.
  • Goffin C, Ghuysen JM. Biochemistry and comparative genomics of SxxK superfamily acyltransferases offer a clue to the mycobacterial paradox: Presence of penicillin-susceptible target proteins versus lack of efficiency of penicillin as therapeutic agent. Microbiol. Mol. Biol. Rev. 2002;66:702–738. [PMC free article] [PubMed]
  • Goude R, Amin AG, Chatterjee D, Parish T. The critical role of embC in Mycobacterium tuberculosis. J. Bacteriol. 2008;190:4335–4341. [PMC free article] [PubMed]
  • Gray GR, Ballou CE. Isolation and characterization of a polysaccharide containing 3-O-methyl-D-mannose from Mycobacterium phlei. J. Biol. Chem. 1971;246:6835–6842. [PubMed]
  • Guérardel Y, Maes E, Briken V, Chirat F, Leroy Y, Locht C, Strecker G, Kremer L. Lipomannan and lipoarabinomannan from a clinical isolate of Mycobacterium kansasii: Novel structural features and apoptosis-inducing properties. J. Biol. Chem. 2003;278:36637–36651. [PubMed]
  • Guérardel Y, Maes E, Elass E, Leroy Y, Timmerman P, Besra GS, Locht C, Strecker G, Kremer L. Structural study of lipomannan and lipoarabinomannan from Mycobacterium chelonae. J. Biol. Chem. 2002;277:30635–30648. [PubMed]
  • Guerin ME, Korduláková J, Schaeffer F, Svetliková Z, Buschiazzo A, Giganti D, Gicquel B, Mikušová K, Jackson M, Alzari PM. Molecular recognition and interfacial catalysis by the essential phosphatidylinositol mannosyltransferase PimA from mycobacteria. J. Biol. Chem. 2007;282:20705–20714. [PubMed]
  • Guilhot C, Chalut C, Daffé M. Biosynthesis and roles of phenolic glycolipids and related molecules in Mycobacterium tuberculosis. In: Daffé M, Reyrat J-M, editors. The mycobacterial cell envelope. ASM Press; Washington DC: 2008. pp. 273–289.
  • Guilhot C, Daffé M. Polyketides and polyketide-containing glycolipids of Mycobacterium tuberculosis: Structure, biosynthesis and biological activities. In: Kaufmann SH, Rubin E, editors. Handbook of tuberculosis. Molecular biology and biochemistry. Wiley-vch; Weinheim: 2008. pp. 21–51.
  • Gurcha SS, Baulard AR, Kremer L, Locht C, Moody DB, Muhlecker W, Costellos CE, Crick DC, Brennan PJ, Besra GS. Ppm1, a novel polyprenol monophosphomannose synthase from Mycobacterium tuberculosis. Biochem J. 2002;365:441–450. [PubMed]
  • Hanks JH. The origin of the capsules on Mycobacterium leprae and other tissue-grown mycobacteria. Int. J. Leprosy. 1961;26:172–174.
  • Hindsgaul O, Ballou CE. Affinity purification of mycobacterial polymethyl polysaccharides and a study of polysaccharide-lipid interactions by 1H NMR. Biochemistry. 1984;23:577–584. [PubMed]
  • Hoang TT, Ma Y, Stern RJ, McNeil MR, Schweizer H. Construction and use of low-copy number T7 expression vectors for purification of problem proteins: purification of Mycobacterium tuberculosis RmlD and Pseudomonas aeruginosa LasI and Rh1I proteins, and functional analysis of purified Rh1I. Gene. 1999;237:361–371. [PubMed]
  • Hoffmann C, Leis A, Niederweis M, Plitzko JM, Engelhardt H. Disclosure of the mycobacterial outer membrane: cryo-electron tomography and vitreous sections reveal the lipid bilayer structure. Proc. Natl. Acad. Sci. USA. 2008;105:3963–3967. [PubMed]
  • Horn C, Namane A, Pescher P, Riviere M, Romain F, Puzo G, Barzu O, Marchal G. Decreased capacity of recombinant 45/47-kDa molecules (Apa) of Mycobacterium tuberculosis to stimulate T lymphocyte responses related to changes in their mannosylation pattern. J. Biol. Chem. 1999;274:32023–32030. [PubMed]
  • Huang H, Berg S, Spencer JS, Vereecke D, D’Haeze W, Holsters M, McNeil MR. Identification of amino acids and domains required for catalytic activity of DPPR synthase, a cell wall biosynthetic enzyme of Mycobacterium tuberculosis. Microbiology. 2008;154:736–743. [PubMed]
  • Huang H, Scherman MS, D’Haeze W, Vereecke D, Holsters M, Crick DC, McNeil MR. Identification and active expression of the Mycobacterium tuberculosis gene encoding 5-phospho-α-D-ribose-1-diphosphate: decaprenyl-phosphate 5-phosphoribosyltransferase, the first enzyme committed to decaprenylphosphoryl-D-arabinose synthesis. J. Biol. Chem. 2005;280:24539–24543. [PubMed]
  • Jackson M, Brennan PJ. Polymethylated polysaccharides from Mycobacterium species revisited. J. Biol. Chem. 2008 in press. [PubMed]
  • Jackson M, Raynaud C, Lanéelle M-A, Guilhot C, Laurent-Winter C, Ensergueix D, Gicquel B, Daffé M. Inactivation of the antigen 85C gene profoundly affects the mycolate content and alters the permeability of the Mycobacterium tuberculosis cell envelope. Mol. Microbiol. 1999;31:1573–1587. [PubMed]
  • Jackson M, Stadthagen G, Gicquel B. Long-chain multiple methyl-branched fatty acid-containing lipids of Mycobacterium tuberculosis: biosynthesis, transport, regulation and biological activities. Tuberculosis. 2007;87:78–86. [PubMed]
  • Jain M, Cox JS. Interaction between polyketide synthase and transporter suggests coupled synthesis and export of virulence lipid in M. tuberculosis. PLoS Pathogens. 2005;1:12–19. [PMC free article] [PubMed]
  • Jarlier V, Nikaido H. Mycobacterial cell wall: Structure and role in natural resistance to antibiotics. FEMS Microbiol. Lett. 1994;123:11–18. [PubMed]
  • Joe M, Sun D, Taha H, Completo GC, Croudace JE, Lammas DA, Besra GS, Lowary TL. The 5-deoxy-5-methylthio-xylofuranose residue in mycobacterial lipoarabinomannan. Absolute stereochemistry, linkage position, conformation, and immunomodulatory activity. J Am Chem Soc. 2006;128:5059–5072. [PubMed]
  • Kaur D, Berg S, Dinadayala P, Gicquel B, Chatterjee D, McNeil MR, Vissa V, Crick DC, Jackson M, Brennan PJ. Biosynthesis of mycobacterial lipoarabinomannan: Role of a branching mannosyltransferase. Proc. Natl. Acad. Sci. USA. 2006;103:13664–13669. [PubMed]
  • Kaur D, McNeil MR, Khoo K-H, Chatterjee D, Crick DC, Jackson M, Brennan PJ. New insights into the biosynthesis of mycobacterial lipomannan arising from deletion of a conserved gene. J. Biol. Chem. 2007;282:27133–27140. [PubMed]
  • Kaur D, Obregón-Henao A, Pham H, Chatterjee D, Brennan PJ, Jackson M. Lipoarabinomannan of Mycobacterium; mannose capping by a multifunctional terminal mannosyltransferase. Proc. Natl. Acad. Sci. USA. 2008 in press. [PubMed]
  • Khasnobis S, Zhang J, Angala SK, G AA, McNeil MR, Crick DC, Chatterjee D. Characterization of a specific arabinosyltransferase activity involved in mycobacterial arabinan synthesis. Chem. Biol. 2006;13:787–795. [PubMed]
  • Khoo K-H, Dell A, Morris HR, Brennan PJ, Chatterjee D. Structural definition of acylated phosphatidylinositol mannosides from Mycobacterium tuberculosis: definition of a common anchor for lipomannan and lipoarabinomannan. Glycobiology. 1995;5:117–127. [PubMed]
  • Koledin T, Newton GL, Fahey RC. Identification of the mycothiol synthase gene (mshD) encoding the acetyltransferase producing mycothiol in actinomycetes. Arch Microbiol. 2002;178:331–337. [PubMed]
  • Korduláková J, Gilleron M, Mikušová K, Puzo G, Brennan PJ, Gicquel B, Jackson M. Definition of the first mannosylation step in phosphatidylinositol synthesis: PimA is essential for growth of mycobacteria. J. Biol. Chem. 2002;277:31335–31344. [PubMed]
  • Korduláková J, Gilleron M, Puzo G, Brennan PJ, Gicquel B, Mikušová K, Jackson M. Identification of the required acyltransferase step in the biosynthesis of the phosphatidylinositol mannosides of Mycobacterium species. J. Biol. Chem. 2003;278:36285–36295. [PubMed]
  • Kotani S, Yanagida I, Kato K, Matsuda T. Studies on peptides, glycopeptides and antigenic polysaccharide-glycopeptide complexes isolated from an L-11 enzyme lysate of the cell walls of Mycobacterium tuberculosis strain H37Rv. Biken J. 1970;13:249–275. [PubMed]
  • Kovacevic S, Anderson D, Morita YS, Patterson J, Haites R, McMillan BN, Coppel RL, McConville MJ, Billman-Jacobe H. Identification of a novel protein with a role in lipoarabinomannan biosynthesis in mycobacteria. J Biol Chem. 2006;281:9011–9017. [PubMed]
  • Kremer L, Dover LG, Morehouse C, Hitchin P, Everett M, Morris HR, Dell A, Brennan PJ, McNeil MR, Flaherty C, Duncan K, Besra GS. Galactan biosynthesis in Mycobacterium tuberculosis. Identification of a bifunctional UDP-galactofuranosyltransferase. J. Biol. Chem. 2001;276:26430–26440. [PubMed]
  • Kremer L, Gurcha SS, Bifani P, Hitchen PG, Baulard A, Morris HR, Dell A, Brennan PJ, Besra GS. Characterization of a putative α-mannosyltransferase involved in phosphatidylinositol trimannoside biosynthesis in Mycobacterium tuberculosis. Biochem. J. 2002;363:437–447. [PubMed]
  • Kumar P, Schelle MW, Jain M, Lin FL, Petzold CJ, Leavell MD, Leary JA, Cox JS, Bertozzi CR. PapA1 and PapA2 are acyltransferases essential for the biosynthesis of the Mycobacterium tuberculosis virulence factor sulfolipid-1. Proc. Natl. Acad. Sci. USA. 2007;104:11221–11226. [PubMed]
  • Lairson LL, Henrissat B, Davies GJ, Withers SG. Glycosyltransferases: Structures, functions and mechanisms. Annu. Rev. Biochem. 2008;77:521–555. [PubMed]
  • Lares C, Frixon C, Creuzet-Sigal N. Characterization and ultrastructure of mutants of Escherichia coli deficient in α-1,4-glucan-α-1,4-glucan 6-glycosyltransferase (branching enzyme) J. Gen. Microbiol. 1974;82:279–293. [PubMed]
  • Lea-Smith DJ, Martin KL, Pyke JS, Tull D, McConville MJ, Coppel RL, Crellin PK. Analysis of a new mannosyltransferase required for the synthesis of phosphatidylinositol mannosides and lipoarabinomannan reveals two lipomannan pools in Corynebacterineae. J. Biol. Chem. 2008;283:6773–6782. [PubMed]
  • Lederer E, Adam A, Ciorbaru R, Petit JF, Wietzerbin J. Cell walls of mycobacteria and related organisms; chemistry and immunostimulant properties. Mol. Cell Biochem. 1975;7:87–104. [PubMed]
  • Lee A, Wu S-W, Scherman MS, Torrelles JB, Chatterjee C, McNeil MR, Khoo K-H. Sequencing of the oligoarabinosyl units released from mycobacterial arabinogalactan by endogenous arabinanase: Identification of distinctive and novel structural motifs. Biochemistry. 2006;45:15817–15828. [PMC free article] [PubMed]
  • Lee RE, Brennan PJ, Besra GS. Mycobacterial arabinan biosynthesis: the use of synthetic arabinoside acceptors in the development of an arabinosyl transfer assay. Glycobiology. 1997;7:1121–1128. [PubMed]
  • Lee RE, Brennan PJ, Besra GS. Synthesis of β-D-arabinofuranosyl-1-monophosphoryl polyprenols: examination of their function as mycobacterial arabinosyl transferase donors. Biorog. Med. Chem. Lett. 1998;8:951–954. [PubMed]
  • Lee RE, Mikušová K, Brennan PJ, Besra GS. Synthesis of the mycobacterial arabinose donor β-D-arabinofuranosyl-1-monophosphoryldecaprenol, development of a basic arabinosyltransferase assay, and identification of ethambutol as an arabinosyltransferase inhibitor. J. Am. Chem. Soc. 1995;117:11829–11832.
  • Lee YC. Isolation and characterization of lipopolysaccharides containing 6-O-methyl-D-glucose from Mycobacterium species. J. Biol. Chem. 1966;241:1899–1908. [PubMed]
  • Lee YC, Ballou CE. 6-O-methyl-D-glucose from Mycobacteria. J. Biol. Chem. 1964;239:PC3602–PC3603. [PubMed]
  • Leyh-Bouille M, Bonaly R, Ghuysen J-M, Tinelli R, Tipper D. LL-Diaminopimelic acid containing peptidoglycans in walls of Streptomyces spp. and of Clostridium perfringens (Type-A) Biochemistry. 1970;9:2944–2952. [PubMed]
  • Lemassu A, Daffé M. Structural features of the exocellular polysaccharides of Mycobacterium tuberculosis. Biochem. J. 1994;297:351–357. [PubMed]
  • Li W, Xin Y, McNeil MR, Ma Y. rmlB and rmlC genes are essential for growth of mycobacteria. Biochem Biophys Res Commun. 2006;342:170–178. [PubMed]
  • Lu G, Westbrooks JM, Davisdson AL, Chen J. ATP hydrolysis is required to reset the ATP-binding cassette dimer into the resting-state conformation. Proc. Natl. Acad. Sci. USA. 2005;102:17969–17974. [PubMed]
  • Ma Y, Mills JA, Belisle JT, Vissa V, Howell M, Bowlin K, Scherman MS, McNeil MR. Determination of the pathway for rhamnose biosynthesis in mycobacteria: cloning, sequencing and expression of the Mycobacterium tuberculosis gene encoding alpha-D-glucose-1-phosphate thymidylyltransferase. Microbiology. 1997;143:937–945. [PubMed]
  • Ma Y, Pan F, McNeil MR. Formation of dTDP-rhamnose is essential for growth of mycobacteria. J. Bacteriol. 2002;184:3392–3395. [PMC free article] [PubMed]
  • Ma Y, Stern RJ, Scherman MS, Vissa VD, Yan W, Jones VC, Zhang F, Franzblau SG, Lewis WH, McNeil MR. Drug targeting Mycobacterium tuberculosis cell wall synthesis: Genetics of dTDP-Rhamnose synthetic enzymes and development of a microtiter plate-based screen for inhibitors of conversion of dTDP-glucose to dTDP-rhamnose. Antimicrob. Agents Chemother. 2001;45:1407–1416. [PMC free article] [PubMed]
  • Machida Y, Bloch K. Complex formation between mycobacterial polysaccharides and fatty acyl-CoA derivatives. Proc. Natl. Acad. Sci. USA. 1973;70:1146–1148. [PubMed]
  • Maggio JE. Structure of a mycobacterial polysaccharide-fatty acyl-CoA complex: nuclear magnetic resonance studies. Proc. Natl. Acad. Sci. USA. 1980;77:2582–2586. [PubMed]
  • Mahapatra S, Crick DC, Brennan PJ. Comparison of the UDP-N-acetylmuramate:L-alanine ligase enzymes from Mycobacterium tuberculosis and Mycobacterium leprae. J. Bacteriol. 2000;182:6827–6830. [PMC free article] [PubMed]
  • Mahapatra S, Scherman H, Brennan PJ, Crick DC. N-glycolylation of the nucleotide precursors of peptidoglycan biosynthesis of Mycobacterium spp. is altered by drug treatment. J. Bacteriol. 2005a;187:2341–2347. [PMC free article] [PubMed]
  • Mahapatra S, Basu J, Brennan PJ, Crick DC. Structure, biosynthesis and genetics of the mycolic acid-arabinogalactan-peptidoglycan complex. In: Cole ST, Eisenach KD, McMurray DN, Jacobs WR, editors. Tuberculosis and the Tubercle Bacillus. ASM Press; Washington, D.C.: 2005b. pp. 275–285.
  • Malaga W, Constant P, Euphrasie D, Cataldi A, Daffé M, Reyrat J-M, Guilhot C. Deciphering the genetic bases of the structural diversity of phenolic glycolipids in strains of the Mycobacterium tuberculosis complex. J. Biol. Chem. 2008;283:15177–15184. [PubMed]
  • Marabotti A, D’Auria S, Rossi M, Facchiano AM. Theoritical model of the three-dimensional structure of a sugar-binding protein from Pyrococcus horikoshii: structural analysis and sugar-binding simulations. Biochem J. 2004;380:677–684. [PubMed]
  • Marland Z, Beddoe T, Zaker-Tabrizi L, Lucet IS, Brammananth R, Whisstock JC, Wilce MC, Coppel RL, Crellin PK, Rossjohn J. Hijacking of a substrate-binding protein scaffold for use in mycobacterial cell wall biosynthesis. J Mol Biol. 2006;359:983–997. [PubMed]
  • Marrakchi H, Bardou F, Lanéelle M-A, Daffé M. A comprehensive overview of mycolic acid structure and biosynthesis. In: Daffé M, Reyrat J-M, editors. The mycobacterial cell envelope. ASM Press; Washington, DC: 2008. pp. 41–62.
  • Martinez-Fleites C, Proctor M, Roberts S, Bolam DN, Gilbert HJ, Davies GJ. Insights into the synthesis of lipopolysaccharide and antibiotics through the structures of two retaining glycosyltransferases from family GT4. Chem Biol. 2006;13:1143–1152. [PubMed]
  • Matias VRF, Beveridge TJ. Native cell wall organization shown by cryo-electron microscopy confirms the existence of a periplasmic space in Staphylococcus aureus. J Bacteriol. 2006;188:1011–1021. [PMC free article] [PubMed]
  • Matsuhashi M. Biosynthesis in the bacterial cell wall. Tanpakushitsu Kakusan Koso. 1966;11:875–886. [PubMed]
  • Matsunaga I, Bhatt A, Young DC, Cheng T-Y, Eyles SJ, Besra GS, Briken V, Porcelli SA, Costello CE, Jacobs WR, Jr, Moody DB. Mycobacterium tuberculosis pks12 produces a novel polyketide presented by CD1c to T cells. J Exp Med. 2004;200:1559–1569. [PMC free article] [PubMed]
  • McNeil M, Daffé M, Brennan PJ. Evidence for the nature of the link between the arabinogalactan and peptidoglycan of mycobacterial cell wall. J Biol Chem. 1990;265:18200–18206. [PubMed]
  • McNeil MR, Daffé M, Brennan PJ. Location of the mycolyl ester substituents in the cell walls of mycobacteria. J Biol Chem. 1991;266:13217–13223. [PubMed]
  • McNeil MR, Brennan PJ. Structure, function and biogenesis of the cell envelope of mycobacteria in relation to bacterial physiology, pathogenesis and drug resistance; some thoughts and possibilities arising from recent structural information. Res Microbiol. 1991;142:451–463. [PubMed]
  • McNeil MR. Arabinogalactan in mycobacteria: structure, biosynthesis, and genetics. In: Goldberg JB, editor. Genetics of bacterial polysaccharides. CRC Press; Washington DC: 1999. pp. 207–223.
  • Metaferia BB, Fetterolf BJ, Shazad-ul-Hussan S, Moravec M, Smith JA, Ray S, Guttierrez-Lugo M-T, Bewley CA. Synthesis of natural product-inspired inhibitors of Mycobacterium tuberculosis mycothiol-associated enzymes: the first inhibitors of GlcNAc-Ins deacetylase. J Med Chem. 2007;50:6326–6336. [PubMed]
  • Meroueh SO, Bencze KZ, Hesek D, Lee M, Fisher JF, Stemmler TL, Mobashery S. Three-dimensional structure of the bacterial cell wall peptidoglycan. Proc Natl Acad Sci U.S.A. 2006;103:4404–4409. [PubMed]
  • Michell SL, Whelan AO, Wheeler PR, Panico M, Easton RL, Etienne T, Haslam SM, Dell A, Morris HR, Reason AJ, Herrmann J-L, Young DB, Hewinson RG. The MBP83 antigen from Mycobacterium bovis contains O-linked mannose and (1→3)-mannobiose moieties. J. Biol. Chem. 2003;278:16423–16432. [PubMed]
  • Mikušová K, Belánová M, Korduláková J, Honda K, McNeil MR, Mahapatra S, Crick DC, Brennan PJ. Identification of a novel galactosyl transferase involved in biosynthesis of the mycobacterial cell wall. J. Bacteriol. 2006;188:6592–6598. [PMC free article] [PubMed]
  • Mikušová K, Huang H, Yagi T, Holsters M, Vereecke D, D’Haeze W, Scherman MS, Brennan PJ, McNeil MR, Crick DC. Decaprenylphosphoryl arabinofuranose, the donor of the D-arabinofuranosyl residues of mycobacterial arabinan, is formed via a two-step epimerization of decaprenylphosphoryl ribose. J. Bacteriol. 2005;187:8020–8025. [PMC free article] [PubMed]
  • Mikušová K, Mikus M, Besra GS, Hancock I, Brennan PJ. Biosynthesis of the linkage region of the mycobacterial cell wall. J. Biol. Chem. 1996;271:7820–7828. [PubMed]
  • Mikušová K, Yagi T, Stern R, McNeil MR, Besra GS, Crick DC, Brennan PJ. Biosynthesis of the galactan component of the mycobacterial cell wall. J. Biol. Chem. 2000;275:33890–33897. [PubMed]
  • Miley MJ, Zielinska AK, Keenan JE, Bratton SM, Radominska-Pandya A, Redinbo MR. Crystal structure of the cofactor-binding domain of the human phase II drug metabolism enzyme UDP-glucuronosyltransferase 2B7. J. Mol. Biol. 2007;369:498–511. [PMC free article] [PubMed]
  • Miller CC, Rawat M, Johnson T, Av-Gay Y. Innate protection of Mycobacterium smegmatis against the antimicrobial activity of nitric oxide is provided by mycothiol. Antimicrob. Agents Chemother. 2007;51:3364–3366. [PMC free article] [PubMed]
  • Mills JA, Motichka K, Jucker M, Wu HP, Uhlik BC, Stern RJ, Scherman MS, Vissa VD, Pan F, Kundu M, Ma YF, McNeil MR. Inactivation of the mycobacterial rhamnosyltransferase, which is needed for the formation of the arabinogalactan-peptidoglycan linker, leads to irreversible loss of viability. J. Biol. Chem. 2004;279:43540–43546. [PubMed]
  • Minnikin DE. Lipids: Complex lipids, their chemistry, biosynthesis and roles. In: Ratledge C, Stanford J, editors. The Biology of Mycobacteria. Vol. 1. Academic Press; London: 1982. pp. 95–184.
  • Mishra AK, Alderwick LJ, Rittmann D, Tatituri RV, Nigou J, Gilleron M, Eggeling L, Besra GS. Identification of an alpha(1->6) mannopyranosyltransferase (MptA), involved in Corynebacterium glutamicum lipomannan biosynthesis, and identification of its orthologue in Mycobacterium tuberculosis. Mol Microbiol. 2007;65:1503–1517. [PMC free article] [PubMed]
  • Mishra AK, Alderwick LJ, Rittmann D, Wang C, Bhatt A, Jacobs WR, Jr., Takayama K, Eggeling L, Besra GS. Identification of a novel alpha(1->6) mannopyranosyltransferase MptB from Corynebacterium glutamicum by deletion of a conserved gene, NCgl1505, affords a lipomannan- and lipoarabinomannan-deficient mutant. Mol. Microbiol. 2008;68:1595–1613. [PMC free article] [PubMed]
  • Morita YS, Patterson JH, Billman-Jacobe H, McConville MJ. Biosynthesis of mycobacterial phosphatidylinositol mannosides. Biochem. J. 2004;378:589–597. [PubMed]
  • Morita YS, Sena CCB, Waller RF, Kurokawa K, Sernee MF, Nakatani F, Haites RE, Billman-Jacobe H, McConville MJ, Maeda Y, Kinoshita T. PimE is a polyprenol-phosphate-mannose-dependent mannosyltransferase that transfers the fifth mannose of phosphatidylinositol mannoside in mycobacteria. J. Biol. Chem. 2006;281:25143–25155. [PubMed]
  • Morita YS, Velasquez R, Taig E, Waller RF, Patterson JH, Tull D, Williams SJ, Billman-Jacobe H, McConville MJ. Compartmentalization of lipid biosynthesis in mycobacteria. J. Biol. Chem. 2005;280:21645–21652. [PubMed]
  • Mougous JD, Petzold CJ, Seraratne RH, Lee DH, Akey DL, Lin FL, Munchel SE, Pratt MR, Riley LW, Leary JA, Berger JM, Bertozzi CR. Identification, function and structure of the mycobacterial sulfotransferase that initiates sulfolipid-1 biosynthesis. Nat Struct Mol Biol. 2004;11:721–729. [PubMed]
  • Murphy HN, Stewart GR, Mischenko VV, Apt AS, Harris R, McAlister MSB, Driscoll PC, Young DB, Robertson BD. The OtsAB pathway is essential for trehalose biosynthesis in Mycobacterium tuberculosis. J. Biol. Chem. 2005;280:14524–14529. [PubMed]
  • Natarajan VT, Mohanty D, Gokhale RS. Biosynthesis of mycobacterial lipids by multifunctional polyketide synthases. In: Daffé M, Reyrat J-M, editors. The mycobacterial cell envelope. ASM Press; Washington DC: 2008. pp. 235–248.
  • Newton GL, Av-Gay Y, Fahey RC. N-acetyl-1-D-myo-inosityl-2-amino-2-deoxy-(-D-glucopyranoside deacetylase (MshB) is a key enzyme in mycothiol biosynthesis. J. Bacteriol. 2000;182:6958–6963. [PMC free article] [PubMed]
  • Newton GL, Buchmeier N, Fahey RC. Biosynthesis and functions of mycothiol, the unique protective thiol of Actinobacteria. Microbiol. Mol. Biol. Rev. 2008;72:471–494. [PMC free article] [PubMed]
  • Newton GL, Ko M, Ta P, Av-Gay Y, Fahey RC. Purification and characterization of Mycobacterium tuberculosis 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase, MshB, a mycothiol biosynthetic enzyme. Protein Expr. Purif. 2006b;47:542–550. [PubMed]
  • Newton GL, Koledin T, Gorovitz B, Rawat M, Fahey RC, Av-Gay Y. The glycosyltransferase gene encoding the enzyme catalyzing the first step of mycothiol biosynthesis (mshA) J. Bacteriol. 2003;185:3476–3479. [PMC free article] [PubMed]
  • Newton GL, Ta P, Bzymek KP, Fahey RC. Biochemistry of the initial steps of mycothiol biosynthesis. J. Biol. Chem. 2006a;281:33910–33920. [PubMed]
  • Newton GL, Ta P, Sareen D, Fahey RC. A coupled spectrophotometric assay for 1-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase and its application for inhibitor screening. Anal. Biochem. 2006c;353:167–173. [PubMed]
  • Ortalo-Magné A, Dupont MA, Lemassu A, Andersen AB, Gounon P, Daffé M. Molecular composition of the outermost capsular material of the tubercle bacillus. Microbiol. 1995;141:1609–1620. [PubMed]
  • Pan F, Jackson M, Ma Y, McNeil M. Cell wall core galactofuran synthesis is essential for growth of mycobacteria. J. Bacteriol. 2001;183:3991–3998. [PMC free article] [PubMed]
  • Pan YT, Carroll JD, Elbein AD. Trehalose-phosphate synthase of Mycobacterium tuberculosis. Eur. J. Biochem. 2002;269:6091–6100. [PubMed]
  • Pan Y-T, Carroll JD, Asano N, Pastuszak I, Edavana VK, Elbein AD. Trehalose synthase converts glycogen to trehalose. FEBS Journal. 2008;275:3408–3420. [PubMed]
  • Parish T, Liu J, Nikaido H, Stoker NG. A Mycobacterium smegmatis mutant with a defective inositol monophosphate phosphatase gene homolog has altered cell envelope permeability. J. Bacteriol. 1997;179:7827–7833. [PMC free article] [PubMed]
  • Patterson JH, Waller RF, Jeevarajah D, Billman-Jacobe H, McConville MJ. Mannose metabolism is required for mycobacterial growth. Biochem J. 2003;372:77–86. [PubMed]
  • Pérez E, Constant P, Lemassu A, Laval F, Daffé M, Guilhot C. Characterization of three glycosyltransferases involved in the biosynthesis of the phenolic glycolipid antigens from the Mycobacterium tuberculosis complex. J. Biol. Chem. 2004;279:42574–42583. [PubMed]
  • Petit JF, Adam A, Wietzerbin-Falszpan J, Lederer E, Ghuysen JM. Chemical structure of the cell wall of Mycobacterium smegmatis. I. Isolation and partial characterization of the peptidoglycan. Biochem Biophys Res Commun. 1969;35:478–485. [PubMed]
  • Pitarque S, Herrmann J-L, Duteyrat J-L, Jackson M, Stewart GR, Lecointe F, Payré B, Schwartz O, Young DB, Marchal G, Lagrange PH, Puzo G, Gicquel B, Nigou J, Neyrolles O. Deciphering the molecular bases of Mycobacterium tuberculosis binding to DC-SIGN reveals an underestimated complexity. Biochem. J. 2005;392:615–624. [PubMed]
  • Pitarque S, Larrouy-Maumus G, Payré B, Jackson M, Puzo G, Nigou J. The immunomodulatory lipoglycans, lipoarabinomannan and lipomannan, are exposed at the mycobacterial cell surface. Tuberculosis. 2008 in press. [PMC free article] [PubMed]
  • Preiss J, Romeo T. Physiology, biochemistry and genetics of bacterial glycogen synthesis. Adv. Microb. Physiol. 1989;30:183–238. [PubMed]
  • Raetz CRH, Whitfield C. Lipolysaccharide assembly. Annu Rev Biochem. 2002;71:635–700. [PMC free article] [PubMed]
  • Ragas A, Roussel L, Puzo G, Riviere M. The Mycobacterium tuberculosis cell-surface glycoprotein Apa as a potential adhesin to colonize target cells via the innate immune system pulmonary C-type lectin surfactant protein A. J. Biol. Chem. 2007;282:5133–5142. [PubMed]
  • Rastogi N. Recent observations concerning the structure and function relationships in the mycobacterial cell envelope: elaboration of a model in terms of mycobacterial pathogenicity, virulence and drug-resistance. Res. Microbiol. 1991;142:464–476. [PubMed]
  • Rawat M, Av-Gay Y. Mycothiol-dependent proteins in Actinomycetes. FEMS Microbiol Rev. 2007;31:278–292. [PubMed]
  • Rawat M, Johnson C, Cadiz V, Av-Gay Y. Comparative analysis of mutants in the mycothiol biosynthesis pathway in Mycobacterium smegmatis. Biochem Biophys Res Commun. 2007;363:71–76. [PubMed]
  • Rawat M, Newton GL, Ko M, Martinez GJ, Fahey RC, Av-Gay Y. Mycothiol-dependent Mycobacterium smegmatis mutants are hypersensitive to alkylating agents, free radicals and antibiotics. Antimicrob. Agents Chemother. 2002;46:3348–3355. [PMC free article] [PubMed]
  • Raymond JB, Mahapatra S, Crick DC, Pavelka MS. Identification of the namH gene, encoding the hydroxylase responsible for the N-glycolylation of the mycobacterial peptidoglycan. J Biol Chem. 2005;280:326–333. [PubMed]
  • Reed MB, Domenech P, Manca C, Su H, Barczak AK, Kreiswirth BN, Kaplan G, Barry CE., III A glycolipid of hypervirulent tuberculosis strains that inhibits the innate immune response. Nature. 2004;431:84–87. [PubMed]
  • Reizer J, Reizer A, Saier MHJ. A new subfamily of bacterial ABC-type transport systems catalyzing export of drugs and carbohydrates. Protein Sci. 1992;10:1326–1332. [PubMed]
  • Ren H, Dover LG, Islam ST, Alexander DC, Chen JM, Besra GS, Liu J. Identification of the lipooligosaccharide biosynthetic gene cluster from Mycobacterium marinum. Mol. Microbiol. 2007;63:1345–1359. [PubMed]
  • Romain F, Horn C, Pescher P, Namane A, Rivière M, Puzo G, Barzu O, Marchal G. Deglycosylation of the 45/47-kilodalton antigen complex of Mycobacterium tuberculosis decreases its capacity to elicit in vivo or in vitro cellular immune responses. Infect. Immun. 1999;67:5567–5572. [PMC free article] [PubMed]
  • Rose NL, Completo GC, Lin S-J, McNeil MR, Palcic MM, Lowary TL. Expression, purification and characterization of a galactofuranosyltransferase involved in Mycobacterium tuberculosis arabongalactan biosynthesis. J Am Chem Soc. 2006;128:6721–6729. [PubMed]
  • Sambou T, Dinadayala P, Stadthagen G, Barilone N, Bordat Y, Constant P, Levillain F, Neyrolles O, Gicquel B, Lemassu A, Daffe M, Jackson M. Capsular glucan and intracellular glycogen of Mycobacterium tuberculosis: Biosynthesis and impact on the persistence in mice. Mol. Microbiol. 2008;70:762–774. [PMC free article] [PubMed]
  • Sareen D, Newton GL, Fahey RC, Buchmeier NA. Mycothiol is essential for growth of Mycobacterium tuberculosis Erdman. J. Bacteriol. 2003;185:6736–6740. [PMC free article] [PubMed]
  • Sareen D, Steffek M, Newton GL, Fahey RC. ATP-dependent L-cysteine: 1D-myo-inositol 2-amino-2-deoxy-α-D-glucopyranoside ligase, mycothiol biosynthesis enzyme, MshC, is related to class I cysteinyl-tRNA synthetases. Biochemistry. 2002;43:6885–6890. [PubMed]
  • Schaeffer ML, Khoo K-H, Besra GS, Chatterjee D, Brennan PJ, Belisle JT, Inamine JM. The pimB gene of Mycobacterium tuberculosis encodes a mannosyltransferase involved in lipoarabinomannan biosynthesis. J. Biol. Chem. 1999;274:31625–31631. [PubMed]
  • Scherman MS, Kalbe-Bournonville L, Bush D, Xin Y, Deng L, McNeil MR. Polyprenylphosphate-pentoses in mycobacteria are synthesized from 5-phosphoribose pyrophosphate. J. Biol. Chem. 1996;271:29652–29658. [PubMed]
  • Scherman MS, Weston A, Duncan K, Whittington A, Upton R, Deng L, Comber R, Friedrich JD, McNeil MR. Biosynthetic origin of mycobacterial cell wall arabinosyl residues. J. Bacteriol. 1995;177:7125–7130. [PMC free article] [PubMed]
  • Schleifer KH, Kandler O. Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev. 1972;36:407–477. [PMC free article] [PubMed]
  • Schwebach JR, Glatman-Freedman A, Gunther-Cummins L, Dai Z, Robbins JB, Schneerson R, Casadevall A. Glucan is a component of the Mycobacterium tuberculosis surface that is expressed in vitro and in vivo. Infect. Immun. 2002;70:2566–2575. [PMC free article] [PubMed]
  • Seidel M, Alderwick LJ, Birch HL, Sahm H, Eggeling L, Besra GS. Identification of a novel arabinofuranosyltransferase AtfB involved in a terminal step of cell wall arabinan biosynthesis in Corynebacterianeae, such as Corynebacterium glutamicum and Mycobacterium tuberculosis. J. Biol. Chem. 2007;282:14729–14740. [PubMed]
  • Shi L, Berg S, Lee A, Spencer JS, Zhang J, Vissa V, McNeil MR, Khoo K-H, Chatterjee C. The carboxy terminus of EmbC from Mycobacterium smegmatis mediates chain length extension of the arabinan in lipoarabinomannan. J. Biol. Chem. 2006;281:19512–19526. [PubMed]
  • Shi L, Zhou R, Liu Z, Lowary TL, Seeberger PH, Stocker BL, Crick DC, Khoo K-H, Chatterjee C. Transfer of the first arabinofuranose residue to galactan is essential for Mycobacterium smegmatis viability. J. Bacteriol. 2008;190:5248–5255. [PMC free article] [PubMed]
  • Stadthagen G, Sambou T, Guerin M, Barilone N, Boudou F, Kordulakova J, Charles P, Alzari PM, Lemassu A, Daffé M, Puzo G, Gicquel B, Rivière M, Jackson M. Genetic basis for the biosynthesis of methylglucose lipopolysaccharides in Mycobacterium tuberculosis. J. Biol. Chem. 2007;282:27270–27276. [PubMed]
  • Stern RJ, Lee TY, Lee TJ, Yan W, Scherman MS, Vissa VD, Kim SK, Wanner BL, McNeil MR. Conversion of dTDP-4-keto-6-deoxyglucose to free dTDP-4-keto-rhamnose by the rmlC gene products of Escherichia coli and Mycobacterium tuberculosis. Microbiology. 1999;145:663–671. [PubMed]
  • Stokes RW, Norris-Jones R, Brooks DE, Beveridge TJ, Doxsee D, Thorson LM. The glycan-rich outer layer of the cell wall of Mycobacterium tuberculosis acts as an antiphagocytic capsule limiting the association of the bacterium with macrophages. Infect. Immun. 2004;72:5676–5686. [PMC free article] [PubMed]
  • Takayama K, Wang C, Besra GS. Pathway to synthesis and processing of mycolic acids in Mycobacterium tuberculosis. Clin. Microbiol. Rev. 2005;18:81–101. [PMC free article] [PubMed]
  • Tatituri RVV, Illarionov PA, Dover LG, Nigou J, Gilleron M, Hitchen PGH, Krumbach K, Morris HR, Spencer N, Dell A, Eggeling L, Besra GS. Inactivation of Corynebacterium glutamicum NCgl0452 and the role of MgtA in the biosynthesis of a novel mannosylated glycolipid involved in lipomannan biosynthesis. J. Biol. Chem. 2007;282:4561–4572. [PubMed]
  • Templin MF, Ursinus A, Holtje JV. A defect in cell wall recycling triggers autolysis during the stationary growth phase of Escherichia coli. EMBO J. 1999;18:4108–4117. [PubMed]
  • Torrelles JB, Knaup R, Kolareth A, Slepushkina T, Kaufman TM, Kang P, Hill PJ, Brennan PJ, Chatterjee C, Belisle JT, Musser JM, Schlesinger LS. Identification of Mycobacterium tuberculosis clinical isolates with altered phagocytosis by human macrophages due to a truncated lipoarabinomannan. J. Biol. Chem. 2008 in press. [PubMed]
  • Treumann A, Xidong F, McDonnell L, Derrick PJ, Ashcroft AE, Chatterjee D, Homans SW. 5-methylthiopentose: a new substituent on liporabinomannan in Mycobacterium tuberculosis. J. Mol. Biol. 2002;316:89–100. [PubMed]
  • Tsenova L, Ellison E, Harbacheuski R, Moreira AL, Kurepina N, Reed MB, Mathema B, Barry CE, III, Kaplan G. Virulence of selected Mycobacterium tuberculosis clinical isolates in the rabbit model of meningitis is dependent on phenolic glycolipid produced by the bacilli. J. Infect. Dis. 2005;192:98–106. [PubMed]
  • Tuffal G, Albigot R, Rivière M, Puzo G. Newly found 2-N-acetyl-2,6-dideoxy-β-glucopyranose containing methyl glucose polysaccharides in M. bovis BCG: revised structure of the mycobacterial methyl glucose lipopolysaccharides. Glycobiology. 1998a;8:675–684. [PubMed]
  • Tuffal G, Tuong A, Dhers C, Uzabiaga F, Rivière M, Picard C, Puzo G. Direct evidence of methylglucose lipopolysaccharides/palmitoyl-CoA noncovalent complexes by capillary zone electrophoresis-electrospray/mass spectrometry. Anal. Chem. 1998b;70:1853–1858. [PubMed]
  • Turnbull WB, Shimizu KH, Chatterjee D, Homans SW, Treumann A. Identification of the 5-methylthiopentose substituent in Mycobacterium tuberculosis lipoarabinomannan. Angew. Chem. Int. Ed. 2004;43:3918–3922. [PubMed]
  • van der Ven JG, Kerekgyarto J, Kamerling JP, Liptak A, Vliegenthart JF. Synthesis of fucosylated and non-fucosylated core structure of xylose-containing carbohydrate chains from N-glycoproteins. Carbohydr Res. 1994;264:45–62. [PubMed]
  • VanderVen BC, Harder JD, Crick DC, Belisle JT. Export-mediated assembly of mycobacterial glycoproteins parallels eukaryotic pathways. Science. 2005;309:941–943. [PubMed]
  • van Heijenoort J. Biosynthesis of bacterial peptidoglycan unit. In: Ghuysen JM, Hakenbeck R, editors. Bacterial Cell Wall. Elsevier Medical Press; Amsterdam: 1994. pp. 39–54.
  • van Heijenoort J. Murein synthesis. In: Neidhardt FC, editor. Escherichia coli and Salmonella: Cellular and Molecular Biology. ASM Press; Washington, D.C.: 1996. pp. 1025–1034.
  • van Heijenoort J. Assembly of the monomer unit of bacterial peptidoglycan. Cell Mol Life Sci. 1998;54:300–304. [PubMed]
  • van Heijenoort J. Formation of the glycan chains in the synthesis of bacterial peptidoglycan. Glycobiology. 2001a;11:25R–36R. [PubMed]
  • van Heijenoort J. Recent advances in the formation of the bacterial peptidoglycan monomer unit. Natural Product Reports. 2001b;18:503–519. [PubMed]
  • Vetting MW, Frantom PA, Blanchard JS. Structural and enzymatic analysis of MshA from Corynebacterium glutamicum: substrate-assisted catalysis. J. Biol. Chem. 2008;283:15834–15844. [PubMed]
  • Vilchèze C, Av-Gay Y, Attarian R, Liu Z, Hazbon MH, Colangeli R, Chen B, Liu W, Alland D, Sacchetini JC, Jacobs WR., Jr. Mycothiol biosynthesis is essential for ethionamide susceptibility in Mycobacterium tuberculosis. Mol. Microbiol. 2008;69:1316–1329. [PMC free article] [PubMed]
  • Vollmer W, Holtje JV. The architecture of the murein (peptidoglycan) in gram-negative bacteria: Vertical scaffold or horizontal layer(s)? J Bacteriol. 2004;186:5978–5987. [PMC free article] [PubMed]
  • Wang C, Hayes B, Vestling MM, Takayama K. Transposome mutagenesis of an integral membrane transporter in Corynebacterium matruchotii. Biochem. Biophys. Res. Commun. 2006;340:953–960. [PubMed]
  • Wang R, Klegerman ME, Marsden I, Sinnott M, Groves MJ. An anti-neoplastic glycan isolated from Mycobacterium bovis (BCG vaccine) Biochem. J. 1995;311:867–872. [PubMed]
  • Wang X, Weldeghioghis T, Zhang G, Imperiali B, Prestegard JH. Solution structure of Alg13: the sugar donor subunit of a yeast N-acetylglucosamine transferase. Structure. 2008;16:965–975. [PMC free article] [PubMed]
  • Wietzerbin-Falszpan J, Das BC, Azuma I, Adam A, Petit JF, Lederer E. Determination of amino acid sequences in peptides by mass spectrometry. 22. Isolation and mass spectrometric identification of peptide subunits of mycobacterial cell walls. Biochem Biophys Res Commun. 1970;40:57–63. [PubMed]
  • Wietzerbin J, Das BC, Petit JF, Lederer E, Leyh-Bouille M, Ghuysen JM. Occurrence of D-alanyl-(D)-meso-diaminopimelic acid and meso- diaminopimelyl-meso-diaminopimelic acid interpeptide linkages in the peptidoglycan of mycobacteria. Biochemistry. 1974;13:3471–3476. [PubMed]
  • Weston AR, Stern RJ, Lee RE, Nassau PM, Monsey D, Martin SL, Scherman MS, Besra GS, Duncan K, McNeil MR. Biosynthetic origin of mycobacterial cell wall galactofuranosyl residues. Tuber. Lung Dis. 1997;78:123–131. [PubMed]
  • Wolucka BA. Biosynthesis of D-arabinose in mycobacteria - a novel bacterial pathway with implications for antimycobacterial therapy. FEBS Journal. 2008;275:2691–2711. [PubMed]
  • Wolucka BA, McNeil MR, de Hoffmann E, Chojnacki T, Brennan PJ. Recognition of the lipid intermediate for arbinogalactan/arabinomannan biosynthesis and its relation to the mode of action of ethambutol on mycobacteria. J. Biol. Chem. 1994;269:23328–23335. [PubMed]
  • Woodruff PJ, Carlson BL, Siridechadilok B, Pratt MR, Senaratne RH, Mougous JD, Riley LW, Williams SJ, Bertozzi CR. Trehalose is required for growth of Mycobacterium smegmatis. J. Biol. Chem. 2004;279:28835–28843. [PubMed]
  • Yabusaki KK, Ballou CE. Interaction of mycobacterial polymethylpolysaccharides with paranaric acid and palmitoyl-coenzyme A: Structural specificity and monomeric dissociation constants. Proc. Natl. Acad. Sci. USA. 1978;75:691–695. [PubMed]
  • Yabusaki KK, Ballou CE. Effect of polymethylpolysaccharides on the hydrolysis of palmitoyl Coenzyme A by a thioesterase from Mycobacterium smegmatis. J. Biol. Chem. 1979;254:12314–12317. [PubMed]
  • Yabusaki KK, Cohen RE, Ballou CE. Conformational changes associated with complex formation between a mycobacterial polymethylpolysaccharide and palmitic acid. J. Biol. Chem. 1979;254:7282–7286. [PubMed]
  • Yagi T, Mahapatra S, Mikušová K, Crick DC, Brennan PJ. Polymerization of mycobacterial arabinogalactan and ligation to peptidoglycan. J. Biol. Chem. 2003;278:26497–26504. [PubMed]
  • Zhang J, Khoo K-H, Wu S-W, Chatterjee C. Characterization of a distinct arabinofuranosyltransferase in Mycobacterium smegmatis. J. Am. Chem. Soc. 2007;129:9650–9662. [PubMed]
  • Zhang N, Torrelles JB, McNeil MR, Escuyer VE, Khoo K-H, Brennan PJ, Chatterjee D. The Emb proteins of mycobacteria direct arabinosylation of lipoarabinomannan and arabinogalactan via an N-terminal recognition region and a C-terminal synthetic region. Mol. Microbiol. 2003;50:69–76. [PubMed]
  • Zlotta AR, Van Vooren J-P, Denis O, Drowart A, Daffé M, Lefèvre P, Scahndene L, De Cock M, De Bruyn J, Vandenbussche P, Jurion F, Palfliet K, Simon J, Schulman CC, Content J, Huygen K. What are the immunologically active components of bacille Calmette-Guérin in therapy of superficial bladder cancer? Int. J. Cancer. 2000;87:844–852. [PubMed]
  • Zuber B, Chami M, Houssin C, Dubochet J, Griffiths G, Daffé M. Direct visualization of the outer membrane of mycobacteria and corynebacteria in their native state. J. Bact. 2008;190:5672–5680. [PMC free article] [PubMed]