PMCCPMCCPMCC

Search tips
Search criteria 

Advanced

Logo of bmcgenoBioMed Centralsearchsubmit a manuscriptregisterthis articleBMC Genomics
 
From:
Published online 2010 December 22. doi: 10.1186/1471-2164-11-724

Table 3

Comparison of α levels when restricting the definition of a haplotype

MethodParametersSignificance ThresholdCorresponding α level
GabrielD'U > 0.982.72 × 10-70.151
D'L > 0.70
D'U > 0.982.11 × 10-70.12
D'L > 0.85
4-GameteCutoff = 1%3.06 × 10-70.166
Cutoff = 0.5%2.50 × 10-70.139
Solid spineD' = 0.803.71 × 10-70.195
D' = 0.952.79 × 10-70.155

Significance thresholds with corresponding α levels are given for each haplotype calling method with the standard parameters and a set of more restricted parameters. D'U and D'L represent the, upper and lower confidence limits of D', respectively.