Until now we have referred to the ES/iPS cell-derived RPE cells as ‘RPE-like’ cells. But what, in fact, is an authentic RPE cell? Is there more to it than the ‘four p’s’, polygonal, polarized, pigmented, and phagocytic? It is important to provide an operational definition of an RPE cell for at least two reasons. First, it would make comparisons between ES/iPS cell-derived RPE cells generated in different laboratories more meaningful and second, it might maximize the likelihood of finding fully functional RPE cells suitable for therapeutic applications.
A good starting point toward this goal is to compare ES/iPS cell-derived RPE cells with RPE cells obtained from an in vivo source. Such analyses were performed extensively by almost all recent studies, using many different assays, including gene expression profiling. Nevertheless, in most cases, the comparison was done with fetal and not adult human RPE. Where adult human RPE was included in the comparison, the ES cell-derived RPE cells were found to resemble more closely the fetal RPE (
Buchholz et al., 2009;
Carr et al., 2009a;
Klimanskaya et al., 2004;
Liao et al., 2010;
Lu et al., 2009). This is not surprising as the cultured RPE cells still divide and express developmental markers including
MITF and
PAX6 (
Bharti et al., 2008;
Vugler et al., 2008). Although upon transplantation, the levels of these developmental markers and of markers for dividing cells such as Ki67 are reduced (
Vugler et al., 2008), a concern remains that for therapeutic purposes, differentiated cells might be transplanted into the adult that are, in fact, embryonic and dividing. This may be of particular importance when thinking about transplanting such cells into AMD patients where the eye is flooded with cytokines which could potentially maintain the cells in a proliferative state (
Nussenblatt et al., 2009). Hence, in order to reduce the risk of tumor or teratoma formation, it may be wise to explore possibilities to render the cells post-mitotic before transplantation. This might be achieved by modulating the activities of factors that affect in vitro RPE proliferation (
Li et al., 2007) or whose mutations are known to lead to RPE hyperproliferation, such as the cyclin-dependent kinase inhibitor p27 or the modulator of canonical WNT signaling, encoded by the gene mutated in familial adenomatous polyposis coli (
Defoe et al., 2007;
Marcus et al., 1997). Indeed, before cultured RPE cells are used in human patients, the activity of their growth-regulating genes should be checked even when the cells seem stable, mature and post-mitotic.
Despite the fact that the ES/iPS cell-derived RPE cells have a general gene expression profile more typical of fetal RPE, they also express markers shared with postnatal RPE. These include differentiation markers associated with pigmentation, such as tyrosinase (TYR) and the premelanosomal protein-17 (PMEL17), channel proteins, such as Bestrophin-1 (BEST1), markers associated with phagocytosis, such as MERTK and the focal adhesion kinase (FAK), growth factors, such as pigment epithelium-derived factor (PEDF), and the visual cycle genes RPE65 and RLBP1. But how many markers should be shared between the ES/iPS cell-derived cells and RPE cells in vivo, fetal or adult, to be confident the cells in question will retain their identity and function? The initial study by
Klimanskaya et al. (2004) used comparisons based on present/absent calls and showed that ES cell-derived RPE cells and fetal human RPE share expression of a large number of genes. A recent study using hierarchical clustering of gene expression profiles found that human ES cell-derived RPE, but not human iPS cell-derived RPE, clustered together with fetal human RPE. As might be expected, none of the ES/iPS-derived RPE clustered with human melanocytes that are neural crest derived (
Liao et al., 2010). Pair-wise comparisons also showed more similarities between human fetal RPE and ES cell-derived RPE than iPS cell-derived RPE. Further it appears that many of the genes differentially upregulated at least 1.5 fold in ES cell-derived RPE compared to fetal RPE are involved in cell proliferation and neural differentiation, and down-regulated genes in visual perception. Genes upregulated in iPS cell-derived RPE versus fetal RPE were found to be predominantly involved in epithelial development and inflammatory responses, while some of the downregulated genes are, as in the case of ES cell-RPE versus fetal RPE, involved in visual perception (
Liao et al., 2010). These results highlight the need for a thorough functional characterization of these in vitro generated cells.
It will also become important to determine whether genes with dissimilar expression levels are involved in any of the subtle features that characterize the native adult RPE. For instance, from birth to adulthood, the size of human or monkey RPE cells generally increases (
Robb, 1985;
Robinson and Hendrickson, 1995;
Snodderly et al., 2002;
Streeten, 1969). Furthermore, their size in the retina’s periphery, which is rod-dominated, is bigger than their size in the center of the human fovea, which is cone-dominated (
Harman et al., 1997;
Robinson and Hendrickson, 1995;
Snodderly et al., 2002;
Strauss, 2005;
Streeten, 1969). Also, the length of RPE microvilli varies with the length of the photoreceptors’ outer segments they contact (
Kivela et al., 2000;
Streeten, 1969). It is possible, of course, that such subtle cell-to-cell differences are purely adaptive, induced by the microenvironment in which an individual RPE cell finds itself, but the capacity for such adaptations may not be fully developed in the ES/iPS cell-derived cells.
Using an extensive global expression profiling of native fetal, native adult and cultured fetal RPE, Strunnikova et al. have recently identified a set of 154 ‘RPE signature’ genes whose expression levels were similar in the three sample sets and at least 10-fold over the median of the corresponding genes’ expression levels in 78 tissues from throughout the body (
Maminishkis et al., 2006;
Strunnikova et al., 2010). Several of these genes encode proteins with critical RPE functions, for example in melanogenesis, cell adhesion, or the visual cycle. Others encode epithelial proteins such as epithelial channels and transporters, or matrix remodeling proteins, and still others proteins known to be involved in ophthalmic diseases, or the genes mapped to genomic regions associated with such diseases. One might argue therefore that expression of this set of genes in an ES/iPS cell-derived cell would mark it as an authentic RPE cell.
A particular role in the expression of mRNAs and proteins is also played by microRNAs (miRs). Interestingly, like many other epithelia, both adult and fetal RPE cells express microRNAs such as miR-200a, miR-204, miR-205, and miR-211 (
Wang et al., 2010). Most of these microRNAs are well-known for their effects on mRNAs encoding the stem cell factors SOX2 and KLF4 (
Wellner et al., 2009). They are also involved in inducing and maintaining stable epithelial monolayers through the action on mRNAs encoding proteins associated with epithelial-to-mesenchymal transition (EMT) and cell migration (
Park et al., 2008;
Wellner et al., 2009). For example, in fetal human RPE cultures, miR-204 directly targets the mRNA for TGFβ receptor 2, a classical EMT-inducing protein. In fact, a reduction in miR-204 leads to increased TGFβ receptor expression, indirectly resulting in a reduction of the tight junction proteins CLAUDIN 10, 16 and 19 (
Wang et al., 2010). Conversely, disruption of cell–cell contacts in cultured adult mouse RPE leads to upregulation of EMT-inducing factors including the transcription factor ZEB1, which in turn leads to downregulation of tight junction proteins and particular miRs (
Liu et al., 2010;
Park et al., 2008;
Tamiya et al., 2010;
Wellner et al., 2009). Therefore, it is important to determine at what level these miRs are expressed in ES/iPS cell-derived RPE cells, and whether their expression levels correlate with the epithelial state of such cells.
In addition to simply assessing gene expression levels, there is also a need to characterize mRNA isoforms, be they generated by alternative promoter choice or alternative splicing, and ultimately the protein isoforms and their activities as they represent the business end of gene expression. In addition, it is important to define a set encompassing genes that are not normally expressed in adult native RPE and whose aberrant expression might interfere with the normal function of adult RPE cells (for a summary, see ).
| Table 1Molecular and functional criteria of authentic human retinal pigment epithelium (RPE) cells |