The role of the RB tumour suppressor pathway in oxidative stress responses in the haematopoietic system

doi:10.1038/nrc2504

Nat Rev Cancer. Author manuscript; available in PMC 2010 November 22.

Published in final edited form as:

Nat Rev Cancer. 2008 October; 8(10): 769–781.

Published online 2008 September 18. doi: 10.1038/nrc2504

PMCID: PMC2989879

NIHMSID: NIHMS251122

The role of the RB tumour suppressor pathway in oxidative stress responses in the haematopoietic system

Kay F. Macleod

Kay F. Macleod, Ben May Department for Cancer Research, Committee on Cancer Biology, University of Chicago, 929 East 57^th Street, Chicago, Illinois 60637, USA.

Kay F. Macleod: kmacleod/at/uchicago.edu

The publisher's final edited version of this article is available at Nat Rev Cancer

See other articles in PMC that cite the published article.

Abstract

Exposure to pro-oxidants and defects in the repair of oxidative base damage are associated with disease and ageing and also contribute to the development of anaemia, bone marrow failure and haematopoietic malignancies. This Review assesses emerging data indicative of a specific role for the RB tumour suppressor pathway in the response of the haematopoietic system to oxidative stress. This is mediated through signalling pathways that involve DNA damage sensors, forkhead box O (Foxo) transcription factors and p38 mitogen-activated protein kinases and has downstream consequences for cell cycle progression, antioxidant capacity, mitochondrial mass and cellular metabolism.

Mammalian cell cycle checkpoints are activated in response to intracellular and extracellular stresses, such as growth factor deprivation, nucleotide depletion and DNA damage, and the retinoblastoma (RB) tumour suppressor is central in enforcing these checkpoints¹^–³. This stress response function of RB is the key to understanding the importance of the BMI1–INK4A–cyclin D–RB–E2f axis in preventing aberrant proliferation and tumour growth⁴^–⁶ (FIG. 1). The signalling pathways that regulate the dephosphorylation and activation of RB in response to serum deprivation and DNA damage and result in cell cycle arrest are well-described⁶^–⁸ (BOX 1). In particular, growth factor stimulation of Ras activity promotes activator protein 1-dependent transcriptional induction of cyclin D1, whereas serum-dependent induction of MYC has a similar role for transactivation of cyclin D2 (REF. ⁹). D-type cyclin expression promotes the activity of cyclin dependent kinase 4 (CDK4) and CDK6 in phosphorylating RB, leading to its inactivation and de-repression of E2f transcription factors⁶^,¹⁰. Conversely, DNA damage shuts down E2f target gene expression by promoting RB dephosphorylation, mediated in part through induction of p53-dependent expression of p21, which binds to and represses CDK2 activity¹¹, and also through the activation of protein phosphatase 2A (PP2A)¹²^,¹³. Recent reports have suggested a link between the accumulation of reactive oxygen species (ROS) and cell cycle progression¹⁴, but a mechanistic link between increased levels of ROS and cell cycle control has not been established. New data links increased ROS to activation of the RB pathway in the haematopoietic system and this Review focuses on our current understanding of the role of the BMI1–INK4A–cyclin D–RB–E2f axis in responding to oxidative stress through crosstalk with other regulatory pathways to determine rates of cellular proliferation, stem cell self-renewal and terminal differentiation in the blood system.

Figure 1

The retinoblastoma (RB) pathway in stress responses and cancer

Box 1 Summary of the properties and functions of RB

The retinoblastoma (RB) tumour suppressor is functionally inactivated in the majority of human cancers, either directly through deletion or mutation of RB1, or indirectly as a consequence of deregulated activity of upstream factors (such as the cyclin-dependent kinase (Cdk) inhibitor INK4A or the D-type cyclins)⁴^,¹³⁸.

RB1 encodes a nuclear phosphoprotein (RB) of 110–115 kDa that is characterized by a hydrophobic ‘pocket domain’ at its carboxyl terminus through which most of its protein–protein interactions are mediated, including its interactions with E2f transcription factors, viral oncoproteins and other proteins that contain the RB-interacting LxCxE motif. The pocket domain is conserved in the two other Rb family members, p107 and p130, although neither deletion nor mutation of these factors is known to predispose to human cancer¹³⁹.

RB acts to repress the activity of E2F1, E2F2 and E2F3 through recruitment of chromatin remodelling enzymes, including histone deacetylases and BRG1–BRM1 (subunits of SWI–SNF chromatin remodelling complexes) during cellular quiescence, and the histone methyltransferase SUV39H1 during cellular senescence. This activity of RB is referred to as ‘active repression’¹⁴⁰^–¹⁴². E2f target genes include those involved in cell cycle progression and components of the mitotic checkpoint, such as MAD2 (REFS ¹⁰^,¹⁴³).

The interaction of RB with E2fs is disrupted by phosphorylation of RB on 13 serine and threonine residues, mediated by CDK4 and CDK6 when they are associated with their cognate D-type cyclin partners, and by CDK2 when it is bound to E-type cyclins¹⁴⁴. RB is required for cell cycle arrest associated with cellular quiescence, senescence and terminal differentiation in different tissues. Inactivation of RB leads to aberrant cell cycle of post-mitotic cells in vivo and in vitro¹²⁹^,¹⁴⁵.

RB also promotes cellular survival, as shown by the cell death observed in the developing nervous system, liver and ocular lens of Rb1-null mice, by the effects of overexpressing E2fs or inactivating RB (as well as p107 and p130) with DNA tumour virus-encoded oncoproteins (such as SV40 T antigen, human papillomavirus E7 and adenovirus E1A) and by the increased sensitivity of RB-deficient cells to death induced by DNA-damaging agents¹⁴⁶^,¹⁴⁷.

ROS and the cell cycle

ROS are highly reactive molecules produced by the one-electron reduction of oxygen. They include oxygen anions, such as superoxide and the hydroxyl radical, as well as hydrogen peroxide and peroxynitrite, which arises from the reaction of superoxide with nitric oxide¹⁵^,¹⁶. They are primarily generated following release of electrons from complex I and complex III of the electron transport chain at the mitochondria¹⁷^,¹⁸, and to a lesser extent by peroxisomes and by the activity of NADPH oxidases (Nox) at the plasma membrane¹⁹ (BOX 2). They have important functions in cell signalling in general but their role in regulating cell cycle progression is poorly understood. ROS levels increase significantly as cells pass from G1 into S phase of cell cycle¹⁴^,²⁰ and ROS are required for S phase entry, as demonstrated by the cell cycle arrest induced by quenching ROS¹⁴^,²¹. However, cell cycle checkpoints are also activated by increased ROS²², indicating that cellular proliferation relies on maintaining ROS levels within a functional range. ROS have been proposed to modulate the cell cycle in a variety of ways, including through effects on the activity of enzymes with redox-sensitive amino acids at their catalytic sites²⁰ that are required for cell cycle progression. These include ribonucleotide reductase, which is crucial for nucleotide biosynthesis²³. ROS have also been proposed to inhibit the turnover of key cell cycle progression factors by as yet unknown mechanisms. For example, ROS stabilize levels of F-box only protein 5 (FBXO5, also known as EMI1)¹⁴, an E2f target gene that inhibits the anaphase-promoting complex (APC) in S and G2 phases of cell cycle by acting as a pseudo-substrate, thereby preventing premature entry into mitosis²⁴.

Box 2 Reactive oxygen species and the ‘free radical theory of ageing’

Originally synonymous with the ‘rate of living’ hypothesis, which argued that the metabolic rate of animals determined life expectancy, the ‘free radical theory of ageing’ postulated that endogenous oxygen radicals induced cumulative oxidative damage to DNA, proteins and lipids that explained cellular degeneration and loss of function over the lifetime of the animal¹⁵.

Diatomic oxygen is a potent acceptor of electrons, and highly reactive superoxide and hydrogen peroxide radicals generated by one-electron reduction of oxygen at the mitochondria are the major forms of intracellular oxygen radicals, despite the scavenging activity of mitochondrial superoxide dismutase (mSOD) and cytochrome c in the inter-membrane space¹⁶. Factors limiting the escape of electrons from the mitochondrial respiratory chain include the availability of ADP and, ironically, oxygen, which is required in sufficient but not excess quantities to accept four electrons per molecule to form water, rather than free radicals¹⁴⁸.

Loss of mitochondrial integrity induced by peroxidation of mitochondrial lipids or damage to mitochondrial proteins that are in close proximity to the source of reactive oxygen species (ROS) leads to more ROS production that feeds back in a vicious cycle to cause more damage.

Telomere attrition, which increases with age, explains aspects of cellular senescence and failed tissue regeneration¹⁴⁹^,¹⁵⁰. Additionally, the age-dependent increase in INK4A expression may be directly attributed to the generation of ROS that activate p38 mitogen-activated protein kinase to promote INK4A transcription, thereby explaining aspects of the role of ROS in cellular senescence, reduced stem cell self-renewal and ageing¹⁸^,²⁵.

At a glance

Reactive oxygen species (ROS) produced at the mitochondrial respiratory chain and to a lesser extent by peroxisomes and plasma membrane-bound NADPH oxidases have a crucial role in signalling pathways in the cell, including a requirement for ROS to promote S phase entry.
Excess ROS can lead to cell cycle arrest, senescence or cell death and thus proper management of ROS is required to prevent premature ageing and disease.
Increased ROS levels in the haematopoietic system lead to stem cell depletion and bone marrow failure and are associated with activation of the retinoblastoma (RB) pathway through induction of the cyclin-dependent kinase inhibitor INK4A.
RB is required to maintain the haematopoietic stem cell (HSC) pool and prevent aberrant S phase entry of HSCs in response to proliferative stress.
Defects in Rb1-deficient haematopoiesis are due in part to non-cell-autonomous events, including the influence of the bone marrow niche on the development of myeloproliferative disease and the sensitivity of stem cells and erythroid cells to proliferative stress. These observations are indicative of a role for RB in regulating the stromal microenvironment.
Disruption of ataxia telangiectasia mutated (ATM) or the Forkhead box O (Foxo) transcription factors in mice leads to increased ROS levels in HSCs that induce p38 mitogen-activated protein kinase activity, INK4A expression, downregulation of N-cadherin and increased stem cell recruitment into the cell cycle, probably due to reduced expression of the cyclin-dependent kinase inhibitors p21 and p27. Thus, ATM and Foxo act upstream of RB in the response of the cell to ROS.
Proliferative stress also induces erythroid maturation defects in the Rb1-null mouse that include failure to exit the cell cycle during terminal differentiation, increased ROS levels, increased DNA damage and altered management of mitochondrial mass.
Acetylation of RB modulates its rate of turnover in response to oxidative stress and protein phosphatase 2A-dependent dephosphorylation modulates its activity.
The role of the RB pathway in responding to oxidative stress in the haematopoietic system has implications for how other cell types respond to ROS, including human tumours that lack a functional RB pathway. Such cancers exhibit defective stress responses and increased levels of ROS, making them more susceptible to chemotherapy-induced death.

Cell cycle control and the haematopoietic system

The importance of appropriate cell cycle control for haematopoietic homeostasis in general and for stem cell self-renewal in particular has been highlighted by phenotypical analysis of genetically engineered mice lacking the expression of key cell cycle regulatory proteins such as INK4A, p21, D-type cyclins and RB²⁵^–³² (TABLE 1). The ability of the organism to respond to physiological stresses such as anaemia, infection and natural attrition of short-lived cells relies on the regulated recruitment of haematopoietic stem cells (HSCs) from their predominantly quiescent state and into the cell cycle to replenish the stem cell pool and also to provide progenitor cells that expand and differentiate producing functional end-stage blood cells³²^,³³. Loss of cell cycle-inhibitory molecules, such as p21, results in stem cell depletion as a consequence of increased cell cycle entry and differentiation at the expense of self-renewal²⁶^,³². Conversely, inactivation of all three D-type cyclins resulted in haematopoietic insufficiency due to the failure of stem cells to proliferate²⁷. The role of the cyclin-dependent kinase inhibitor INK4A in HSC self-renewal is age-dependent, which is consistent with increased INK4A expression over time in mouse stem cells²⁵, not only in the haematopoietic system but also in the pancreas and in neural stem cells³⁴^,³⁵. INK4A-deficient HSC cells from ageing mice showed increased cell cycle entry and self-renewal when injected into lethally irradiated recipient mice, but corresponding cells from younger mice displayed reduced self-renewal capacity, perhaps reflecting a requirement for INK4A in the response to proliferative stress associated with the transplant of donor bone marrow cells into the ablated host blood system²⁵. The mechanism that promotes INK4A expression in an age-dependent manner in HSCs is not understood but, as will be discussed below, probably involves signalling pathways induced by oxidative stress that accumulates with age, consistent with the ‘free radical theory of ageing’¹⁵ (BOX 2). For example, the activity of the polycomb protein BMI1, which negatively regulates expression of INK4A and ARF, may be modulated by oxidative stress as further discussed below (FIG. 2), and targeted deletion of BMI1 resulted in increased expression of both INK4A and ARF in bone marrow HSCs and a marked loss of stem cell self-renewal capacity³⁶^,³⁷.

Table 1

Summary of haematopoietic phenotypes associated with Rb1 deletion in mice

Figure 2

Oxidative stress responses link the retinoblastoma (RB) pathway and Forkhead box O (Foxo) transcription factors

A role for RB in haematopoietic homeostasis

Understanding the function of the RB tumour suppressor itself, as opposed to its upstream regulators, in haematopoiesis has been complicated by the apparent role of the microenvironment in haematopoietic phenotypes associated with loss of Rb1 in the mouse (TABLE 1). From the first study of Rb1-null chimaeric mice demonstrating that the presence of wild-type cells could rescue observed phenotypic defects in the Rb1-null embryo³⁸^,³⁹, our appreciation of the role of RB in haematopoiesis has been permeated by the debate over whether defects are cell-autonomous or non-cell-autonomous⁴⁰ (BOX 3). Despite progress in understanding RB function in various developmental contexts, the role of RB in HSC homeostasis remains controversial²⁸^–³⁰^,⁴¹. Early evidence pointed to decreased potential of long-term repopulating cells when Rb1-null fetal liver was used as a source of donor stem cells²⁸ but, given that these cells had developed in an abnormal environment, many factors could have explained these observations. More recent work has taken advantage of conditional targeting to examine the role of RB in HSC function in the adult mouse²⁹^,³⁰^,⁴¹ and, although inconsistencies persist, a few salient features of defective HSC function emerge (TABLE 1). Consistent with previous repopulation studies²⁸, adult Rb1^flox/flox mice deleted for RB in the haematopoietic system (using either Vav–Cre or poly(I)poly(C)-induced Mx1–Cre) were anaemic and developed myeloproliferative disease with age. This was initially associated with increased bone marrow cellularity but was followed by bone marrow insufficiency and extramedullary haematopoiesis in the spleen²⁹^,³⁰. Intriguingly, both studies demonstrated increased HSC activity in the peripheral blood and spleen and reduced numbers in the bone marrow of mice with an Rb1-deficient haematopoietic system²⁹^,³⁰, suggesting a role for RB in retaining HSCs within the bone marrow niche (BOX 4). Cell cycle analysis of HSCs from Rb1^flox/flox;Vav–Cre mice indicated that an increased proportion of Rb1-deleted HSCs were in the S phase of cell cycle when challenged with agents that induce replicative stress, such as 5-fluorouracil (5-FU)²⁹. By inhibiting thymidylate synthase and depleting nucleotides required for DNA replication, 5-FU induces DNA damage and death of proliferating cells⁴². However, perhaps as a consequence of the death of cycling progenitors, 5-FU has been shown to induce cell cycle re-entry of Rb1-null HSCs⁴³ and is associated with increased production of ROS, reduced expression of N-cadherin and the detachment of HSCs from the bone marrow niche⁴³. The demonstration that Rb1-null cells are more susceptible to cell cycle re-entry in response to treatment with 5-FU implicates RB in HSC quiescence but also in mediating responses to DNA damage and ROS production, as Rb1-deficient HSCs showed similar cell cycle phase distribution to wild-type cells in the absence of replicative stress²⁹. Indeed, recent work has demonstrated that the RB-related proteins p107 (also known as RB-like 1 (RBL1)) and p130 (RBL2) probably compensate for loss of Rb1 in HSCs under steady-state conditions⁴⁴.

Box 3 Cell-intrinsic versus non-cell-autonomous effects in development

The major factor determining the lethality of Rb1-null embryos came to light with seminal work by Leone and colleagues showing that RB is crucial for normal placental development¹⁵¹ owing to its promotion of cell cycle arrest in cycling trophoblast stem cells and/or progenitors. Loss of Rb1 led to over-expansion of trophoblasts and aberrant placental architecture¹⁵². However, in chimaeric embryos, the placenta is derived from the extra-embryonic layer of wild-type blastocytes, thus explaining the reduced incidence of cell death in Rb1-null chimaeric embryos that have a wild-type placenta¹⁵³ and highlighting the role of nutrient deprivation and hypoxia arising from placental malfunction in determining the phenotype of the Rb1-null embryo. Indeed, subsequent work has demonstrated upregulation of hypoxia-inducible genes in tissues of the Rb1-null embryo⁸⁶, and identified a role for hypoxia in disrupting erythroblast islands (made up of a central macrophage providing developmental cues to closely associated differentiating erythroblasts) in the fetal liver of Rb1-null mice¹⁵⁴^,¹⁵⁵, thereby explaining previous data that postulated a role for macrophages in the non-cell-autonomous aspect of defective erythropoiesis in these mice¹⁵⁶. However, the question remained whether, in addition to the non-cell-autonomous defects observed in Rb1-null embryos, cell-intrinsic defects also contributed to the differentiation and viability defects in various Rb1-null tissues. Indeed, the failed cell cycle exit in differentiating neurons¹⁵³, together with age- and stress-dependent defects in red blood cells²⁸ observed in Rb1-null chimaeric mice, confirmed cell-intrinsic consequences of Rb1 loss. Further, a variety of different cell types (primary and tumour cells) deficient for RB exhibited increased susceptibility to cell death induced by hypoxia and ischaemia compared with wild-type cells under the same conditions⁸⁶, pointing to a cell-intrinsic defect in the response to nutrient stress. Thus, the cell-intrinsic cell-cycle defects associated with Rb1 loss sensitize cells to non-cell-autonomous stresses such as nutrient deprivation and hypoxia, which are themselves consequences of Rb1-dependent defects in tissue development.

Box 4 Functions of the bone marrow niche in haematopoietic homeostasis

The bone marrow microenvironment provides cytokines, extracellular matrix, cell–cell contacts and bone minerals to haematopoietic stem cells (HSCs) that reside primarily at the endosteal surface. This environment is frequently referred to as the bone marrow niche. The niche has an instructive role in modulating stem cell renewal, expansion and differentiation⁴⁶^,⁴⁷.

Mesenchyme-derived osteoblasts that give rise to bone have a key role within the bone marrow niche in supporting HSCs through direct contact (mediated by molecules including osteopontin, N-cadherin, angiopoietin and TIE2, as well as various chemokines) and through the release of important regulatory factors, such as Notch ligand⁴⁶.

Extracellular calcium is required for homing of HSCs to the bone marrow and for their interaction with the endosteal surface¹⁵⁷. Hypoxia promotes the expansion of HSCs but it is not completely clear whether oxygen gradients within the bone marrow are consistent with the locations of stem cells¹²³^,¹²⁴. Increased levels of reactive oxygen species in the niche may have a role in sensing the metabolic state of the animal and acting to limit HSC expansion through activation of INK4A and other mechanisms.

The extent to which non-cell-autonomous factors and the bone marrow microenvironment contribute to haematopoietic defects in adult mice carrying targeted deletion of Rb1 is unclear, as some of the Cre-deleter strains used (notably Mx1–Cre) are not haematopoietic-cell-specific in their expression³⁰. Based on competitive repopulation experiments in lethally irradiated wild-type host mice using bone marrow from Rb^flox/flox;Mx1–Cre mice mixed with bone marrow from control Rb1^flox/flox mice, Walkley and colleagues initially reported that Rb1 was not required for the self-renewal and long-term multi-lineage repopulating capacity of HSCs⁴¹. These data contradicted previous work using Rb1-null fetal liver²⁸ and more recent studies using bone marrow from Rb1^flox/flox;Vav–Cre mice²⁹. However, Walkley and colleagues subsequently reported that they did in fact observe myeloproliferative disease, extramedullary haematopoiesis and loss of HSCs from the bone marrow of Rb1^flox/flox;Mx1–Cre mice³⁰. Notably, loss of p107 had previously been linked to the development of myeloproliferative disease in BALB/C mice⁴⁵ and expansion of mature myeloid elements was described in the bone marrow of mice reconstituted with Rb1-null fetal liver²⁸. Intriguingly, the same extent of myeloproliferation detected in Rb1^flox/flox;Mx1–Cre mice was not observed in Rb1^flox/flox;LysM–Cre mice in which the lysozyme M promoter drives Cre expression in the myeloid compartment (consisting of both progenitors and end-stage cells)³⁰. Indeed, interferon-induced, Mx1-driven Cre expression in HSCs results in haematopoietic progeny and lineages deleted for Rb1, including myeloid-derived osteoclasts and macrophages that make up the bone marrow microenvironment³⁰. Thus, although Walkley and colleagues did not observe haematopoietic defects when transplanting bone marrow from Rb1^flox/flox;Mx1–Cre mice into lethally irradiated wild-type hosts (with wild-type bone marrow microenvironment) or vice versa, they did observe myeloproliferative disease when they transplanted bone marrow from Rb1^flox/flox;LysM–Cre mice into lethally irradiated Rb1^flox/flox;Mx1–Cre mice³⁰. These mice developed a completely penetrant myeloproliferative disorder similar to that observed in Rb1^flox/flox;Mx1–Cre mice, and the authors proposed that this was indicative of an interaction between myeloid progenitors and the bone marrow niche. However, given that osteoclasts and macrophages in the bone marrow niche are themselves myeloid in origin, this did not explain why Rb1^flox/flox;LysM–Cre mice did not also show this fully penetrant phenotype, unless there is an additional crucial cell type in the bone marrow niche that is targeted by Mx1–Cre but not by LysM–Cre, an issue that remains to be addressed. Given the importance of mesenchyme-derived osteoblasts in the bone marrow niche⁴⁶^,⁴⁷ (BOX 4), and the role of RB in osteoblast differentiation⁴⁸, an obvious line of enquiry is to examine the effect of osteoblast-specific deletion of Rb1 for both HSC function and myeloproliferation. Furthermore, because Rb1 is not deleted from HSCs in Rb1^flox/flox;LysM–Cre mice, studies to date have not addressed whether loss of Rb1 in the bone marrow niche specifically affects HSC behaviour, as opposed to myeloproliferation. Such a role is, however, supported by the presence of a HSC phenotype in Rb1^flox/flox;Mx1–Cre mice³⁰ but not in wild-type host mice transplanted with Rb1^flox/flox;Mx1–Cre bone marrow⁴¹. The previously discussed dependence on inducers of replicative stress to unmask the cell cycle defect in Rb1^flox/flox;Vav–Cre HSCs points to a potential role for the niche in safe-guarding the HSC against oxidative stress.

Oxidative stress in the haematopoietic system

Among the key modulators of oxidative stress in the haematopoietic system are the forkhead box O (Foxo) transcription factors that regulate the expression of antioxidants, such as superoxide dismutase 2 (SOD2) and catalase⁴⁹. Deletion of Foxo3a in mice reduced expression of SOD2 and catalase, increased ROS in HSCs, and reduced HSC self-renewal potential in an age-dependent manner that was associated with increased cell cycle entry⁵⁰. Mice with PTEN-deficient stem cells showed a similar phenotype, consistent with PTEN acting upstream of Foxo⁴⁹ (FIG. 2). In addition to regulation of antioxidants, Foxos are implicated in transcriptional upregulation of cell cycle inhibitors, including p21, p27 and p130, and downregulation of D-type cyclins.⁴⁹ Accordingly, these genes were deregulated in HSCs deleted for Foxo1, Foxo3a and Foxo4, a result consistent with increased numbers of HSCs in the S/G2 and M phases of the cell cycle, increased differentiation and reduced self-renewal capacity⁵¹. Interestingly, although deletion of Foxo3a alone induced a HSC phenotype and anaemia⁵¹^,⁵², concomitant deletion of Foxo1, Foxo3a and Foxo4 was also associated with a myeloproliferative disorder akin to that observed in mice with an Rb1-deficient haematopoietic system²⁸^–³⁰. These parallels in haematopoietic phenotypes might be explained by the fact that key Foxo target genes mediate their cell cycle regulatory functions through effects on the phosphorylation and subsequent inactivation of RB⁸.

Additional links between Foxo transcription factors and the RB pathway can be made by considering the role of ROS in the haematopoietic system (FIG. 2). Foxo transcription factors function in HSCs in a cell-autonomous manner to regulate ROS levels⁵¹. Treatment of Foxo3a^−/− mice or compound Foxo-deleted mutant mice (engineered through targeted deletion of Foxo1, Foxo3 and Foxo4 in the haematopoietic system) with the glutathione donor and antioxidant agent N-acetyl cysteine (NAC) restored HSC pool size and rescued HSC function⁵⁰^,⁵¹. Thus, these studies implicate increased ROS in the observed HSC defects in Foxo mutant mice.

ROS was previously identified as causative in the HSC defects observed in ataxia telangiectasia mutated (Atm)-null mice⁵³, in which age-dependent loss of HSC and multilineage bone marrow failure and anaemia were observed. Again, treatment with NAC rescued the observed defects in these mice. Expression of human papillomavirus protein E7 (which inactivates the Rb family of pocket proteins, including RB, p107 and p130, see BOX 1) prevented stem cell depletion and restored repopulation capacity to Atm-null HSCs⁵³, highlighting the importance of the RB pathway in preventing HSC depletion downstream of Atm and ROS generation. Interestingly, INK4A levels were shown to be increased in both Atm-null and in Foxo3a-null HSCs, and in both cases this was dependent on ROS and on the activity of p38 mitogen-activated protein kinase (MAPK)⁵⁰^,⁵⁴. JUN N-terminal kinases (JNKs) and p38 are activated in response to various cellular stresses that alter the redox state of the cell, such as endoplasmic reticulum stress, DNA damage, inflammatory cytokines and calcium flux⁵⁵, and their activation is dependent on apoptosis signal-regulating kinase 1 (ASK1, also known as MAP3K5)⁵⁶. ASK1 is maintained in an inactive state through interaction with reduced thioredoxin, which contains two redox-sensitive cysteine residues that are oxidized in response to redox stress. This releases ASK1 from thioredoxin, resulting in downstream activation of mitogen-activated protein kinase kinase 3 (MAP2K3) and MAP2K6, which subsequently activate p38 and JNKs⁵⁶. Of note, JNK requires signalling through MAP2K4, which is activated independently of ASK1, to be fully active in response to ROS⁵⁶. In the haematopoietic system, ROS induced by loss of either ATM or the Foxo proteins led to activation of p38, and inhibition of p38 (or ASK1) prevented both INK4A induction and downregulation of N-cadherin in HSCs, resulting in restored HSC self-renewal⁴³^,⁵⁰^,⁵⁴. This work implicates p38 activity downstream of ROS and Foxo transcription factors in activating the RB pathway through induction of INK4A (FIG. 2). The mechanism by which p38 induces INK4A is not completely understood, although proposed models include p38-mediated phosphorylation and inactivation of BMI1 (involved in repressing the CDKN2A locus, which encodes both INK4A and ARF) or through p38-induced activation of Ets transcription factors that positively regulate INK4A transcription⁵⁷.

DNA damage and oxidative stress

These studies assign a key role to both ATM and Foxos upstream of p38 in managing cellular ROS levels in HSCs (FIG. 2) and, intriguingly, recent work has shown a direct interaction between ATM and FOXO3A at DNA damage foci and invoked a role for FOXO3A in promoting autophosphorylation and activation of ATM in response to damage⁵⁸. Defects in sensing DNA damage or in homologous recombination involved in repair of double-strand breaks have been previously shown to contribute to diseases in the haematopoietic system⁵⁹^,⁶⁰ and RB and E2f have been implicated in the transcriptional regulation of several key DNA repair proteins, including FANCD2, MSH2 and RAD51 (REFS ⁶¹^–⁶³). Furthermore, deficiency for the Fanconi anaemia protein FANCD2 or ataxia telangiectasia and Rad3-related (ATR), both of which are required for cell cycle arrest and repair in response to DNA crosslinking agents, is associated with anaemia and bone marrow failure⁶⁴^,⁶⁵. Similarly, haematopoietic malignancies, immunodeficiency and myelofibrosis are observed in individuals with ataxia telangiectasia, Nijmegen breakage syndrome (NBS) and hereditary breast and ovarian cancer syndrome, which are associated with mutations in ATM, NBN and BRCA2, respectively⁶⁴^,⁶⁶^,⁶⁷. Of particular interest, the Fanconi anaemia pathway lies downstream of ATM kinase in the response to DNA damage and, similarly to ataxia telangiectasia cells, Fanconi anaemia cells show increased levels of ROS and oxidative DNA base damage⁶⁸. Intriguingly, cells from the FANCC complementation group were only sensitive to the crosslinking effects of the chemotherapeutic agent mitomycin C at high oxygen concentration and behaved like normal cells at low oxygen levels, implicating ROS directly in the observed defects⁶⁹. Oxidative stress induces multimerization of FANCA and FANCG, suggesting that the Fanconi anaemia pathway may have a role in sensing cellular levels of ROS independent of DNA damage⁷⁰ and perhaps explaining the unique sensitivity of Fanconi anaemia cells to oxygen tension⁷¹.

Debate still surrounds how and why DNA damage leads to ROS production. As mentioned above, FOXO3A may have a role in activating ATM and, conversely, ATM may contribute towards antioxidant gene expression by inducing checkpoint kinase 2 (CHK2)-dependent phosphorylation of Foxos⁴⁹. An additional source of ROS in ATM-deficient cells may be attributed to the activity of the DNA-damage-sensing enzyme poly(ADP-ribose) polymerase 1 (PARP1). This hydrolyses cytosolic NAD⁺ to generate poly(ADP-ribose), which is conjugated to target proteins including histones and PARP1 itself ⁷². Defects in DNA double-strand break repair due to ATM deficiency lead to persistent PARP1 activity, and treatment of cells from ataxia telangiectasia patients with inhibitors of PARP1 activity reduced ROS levels⁷³. Depletion of NAD⁺ has been proposed to contribute to cellular ROS as a consequence of limiting the activity of the pentose phosphate pathway, which uses NADPH to make glutathione, a key cellular antioxidant, particularly in red blood cells⁷⁴.

Erythropoiesis and oxidative stress

Analysis of the mouse models discussed above has revealed how the interplay between oxidative stress sensing pathways and the cell cycle machinery in HSCs is important for the long-term survival of the animal. However, a cursory glance at the phenotypes of mice with defects in ROS management⁷⁵^,⁷⁶ or of humans with mutations in ROS regulatory enzymes, such as glutathione S-transferase-θ or NADPH quinone oxidoreductase, reveals that survival in response to ageing or acute stresses such as blood loss⁷⁵^–⁷⁷ or occupational exposure to chemicals such as benzene⁷⁸^,⁷⁹ is a function of red blood cell performance. The red blood cell is important for mammalian viability, not just in terms of its capacity to transport oxygen in the form of oxyhaemoglobin to peripheral tissues, but in its antioxidant capacity. Peroxynitrite and superoxide taken up from the environment through red blood cell-specific membrane anion channels are reduced by glutathione and other antioxidants, which are expressed at particularly high levels in red blood cells⁷⁴. In addition to handling extracellular ROS, the red blood cell is equipped to reduce the endogenous ROS that is generated at high levels owing to routine tasks including oxygen and iron uptake, haem biosynthesis and globin chain imbalance management. In particular, the oxidation of ferrous (Fe²⁺) haemoglobin to ferric (Fe³⁺) haemoglobin produces superoxide and hydroxyl radicals that need to be quenched on a scale unparalleled in other mammalian cell types. Failure to manage ROS production owing to inherited genetic defects, such as mutations in glucose-6-phosphate dehydrogenase, which converts NADP to NADPH (required for glutathione reduction), results in reduced red blood cell lifespan and life-threatening anaemia under stressed conditions⁸⁰. Red blood cells also express high levels of antioxidants, including catalase, peroxyredoxins and SODs. Interestingly, FOXO3A becomes increasingly nuclear in localization and transcriptionally active during erythroid maturation⁵². The significance of FOXO3A regulation of SOD2 and catalase for red blood cell production is manifested by increased ROS in Foxo3a-null erythroblasts and the reduced numbers and lifespan of mature red blood cells in Foxo3a-null mice⁵². Given the tight regulation of antioxidant expression during erythroid maturation, it is also tempting to speculate that ROS has an instructive role in erythroid differentiation, perhaps by promoting cell cycle arrest.

New roles of RB–E2F in oxidative stress responses

Loss of Rb1 in the erythroid system resulted in increased ROS that may be explained by the failure of Rb1-null erythroblasts to downregulate the transferrin receptor (CD71)³¹, resulting in increased labile iron that could generate increased ROS levels through the Fenton reaction. However, the defining feature of Rb1-null erythropoiesis is the failure of differentiating erythroblasts to properly exit the cell cycle²⁸^,⁸¹. During erythroid maturation, RB is activated by dephosphorylation and E2F2 is specifically upregulated⁸²^,⁸³. RB was found predominantly in complexes with E2F2 in end-stage erythroblasts at the promoters of cell cycle regulatory genes, and loss of E2F2 restored cell cycle exit and maturation capability to Rb1-null erythroblasts⁸³. These results suggested that Rb1-null erythroblasts are defective for terminal maturation owing to deregulated activity of E2F2, which, when complexed with active RB, represses E2f target gene expression and promotes cell cycle exit, but functions as a cell cycle activator in the absence of RB. These studies revealed a new tissue-restricted role for a member of the E2f family of transcription factors and suggested a unique role for E2F2 in erythroid maturation beyond simple regulation of the classical set of E2f target genes involved in cell cycle. However, the nature of this erythroid-specific function is not clear.

An emerging theme from microarray analyses of E2f target gene expression is the overlap with other transcription factors in regulating both known and new subsets of target genes (FIG. 3). This has perhaps been best illustrated by analyses showing a striking overlap in target genes between E2F4 and the nuclear respiratory factor 1 (NRF1), wherein there were 96 gene promoters regulated in common among 465 that were regulated by E2F4 and 691 that were regulated by NRF1 (REF. ⁸⁴). NRF1 is a key regulator of nuclear encoded genes involved in mitochondrial biogenesis and the response to oxidative stress, including respiratory chain enzymes and transcription factor A, mitochondrial (TFAM)⁸⁵. TFAM regulates the expression of genes encoded by the mitochondrial genome that are required for mitochondrial function, including certain subunits of cytochrome c oxidase and ATP synthase⁸⁵. Similarly, there are several reports identifying genes that are co-regulated by E2F1 and hypoxia-inducible factors (HIFs), including BNIP3, BRCA1, haem oxygenase and the transcription factor DEC1 (REFS ⁶¹^,⁸⁶^,⁸⁷). Thus, the unique role of E2F2 in erythropoiesis could be explained by its interaction with as yet unidentified cooperating transcription factors involved in red blood cell differentiation, similar to the restricted interactions of E2F1 and E2F3 with the transcription factors YY1 and TFE3 in other settings⁸⁸^–⁹⁰. The type of target gene regulated by E2F2 in differentiating red blood cells awaits further characterization, but recent work showing that Rb1-null erythroblasts had lower mitochondrial mass than control erythroblasts⁹¹ suggested a role for RB in regulating genes involved in mitochondrial biogenesis, such as peroxisome proliferator-activated receptor γ (PPARγ) co-activator 1β (PGC-1β, also known as PPARGC1β), NRF1 and NRF2. However, given that erythroblasts destroy their mitochondria during terminal differentiation through a process known as mitophagy, which requires the function of a BH3-only protein known as NIX⁹²^,⁹³, alternative explanations for the observed reduction in mitochondrial mass may be defined. Reduced mitochondrial mass at a specific stage of Rb1-null erythroid differentiation might simply reflect uncoupling of cell cycle exit from mitophagy such that mitophagy proceeds normally (in a similar fashion to the uncoupling of cell cycle exit from other aspects of differentiation, such as globin gene expression), even though other aspects of maturation are arrested. Alternatively, increased mitochondrial mass observed in CCND1-null cells⁹⁴ points to a more direct role for the RB pathway in the regulation of mitochondrial biogenesis, either through coordinate regulation of target genes by E2fs and NRF1 as described previously⁸⁴, or through regulation of NRF1 activity by Cdks⁹⁴ and other ill-defined mechanisms.

Figure 3

Functional interactions of E2f transcription factors with other transcription factors in oxidative stress responses

Regulation of mitochondrial mass is emerging as a key response to hypoxia and oxidative stress⁹⁵. As mentioned, the mitochondria are the major source of ROS in cells, and reducing the size of the mitochondrial reticulum in cells under conditions in which oxidative phosphorylation and electron transport is disrupted has been proposed to limit the generation of ROS⁹⁶^,⁹⁷, and thereby promote cellular integrity and survival. In particular, hypoxia has been shown to induce uptake of mitochondria by autophagosomes that are then turned over following fusion with lysosomes⁹⁶. It has been suggested that, in addition to limiting ROS generation under hypoxic conditions, this process might selectively rid the cell of ‘damaged’ mitochondria (for example, those with oxidized lipid membranes) ⁹⁷, although the basis of such selectivity is not clear. BNIP3 is a HIF target gene implicated in hypoxia-induced autophagy⁸⁶^,⁹⁸ and reportedly functions to promote autophagy by titrating the inhibitory activity of BCL2 away from the autophagy regulator beclin 1 (REF. ⁹⁶). As already discussed, BNIP3 is transcriptionally regulated by RB, E2F and HIF such that E2F1 synergizes with HIF1α to activate BNIP3, whereas RB represses induction of BNIP3 by HIF⁸⁶. BNIP3 is also directly regulated by FOXO3A⁹⁹ and this may explain the hypoxia-independent expression of BNIP3 observed in skeletal and cardiac muscle⁹⁸^,⁹⁹. E2F1 has also been implicated in the transcriptional regulation of ATG1 and ATG8, which encode key components of the basal autophagy machinery¹⁰⁰. In addition to induction of mitophagy, oxidative stress represses mitochondrial biogenesis⁹⁵. HIF-dependent repression of MYC activity leads to inhibition of PGC-1β, a MYC target gene⁸⁵. Effects of PGC-1α (PPARGC1α) and PGC-1β on mitochondrial mass are mediated in part through co-activation, with NRF1 and NRF2, of genes such as TFAM, as well as respiratory chain subunits⁸⁵. Intriguingly, RB–E2F activity has been shown to modulate the expression and activity of both PGC-1α and its cofactor, PPARγ, in adipose tissue¹⁰¹^–¹⁰³, although the significance of this interaction for mitochondrial biogenesis has not been explored. Thus, through cooperative interactions with other transcription factors, RB–E2f appears to indirectly modulate mitochondrial mass of cells and, by extension, levels of ROS (FIG. 3). This may have significance for understanding how mitochondrial numbers are coordinated with the cell cycle, but also, as highlighted here, for how the cell responds to oxidative stress in terms of cell cycle progression and metabolism.

Regulation of RB levels and activity by ROS

In addition to modulating RB activity by inducing INK4A⁵⁰^,⁵⁴, ROS activates PP2A, which promotes dephosphorylation of RB in response to oxidative stress¹²^,¹⁰⁴^,¹⁰⁵. The activation of PP2A by ROS requires Ca²⁺ mobilization for the activity of the PR70 subunit of PP2A¹⁰⁵. Thus, ROS induces dephosphorylation and activation of RB through two mechanisms: inhibition of Cdks and activation of PP2A.

RB levels have also been linked to the redox state of the cell¹⁰⁶, although the mechanistic basis of this link is not understood. Regulation of protein degradation is a major mechanism used by cells to modulate cell cycle checkpoints under different growth conditions¹⁰⁷. For example, the p130 pocket protein, which is structurally and functionally related to RB, is regulated by proteolysis during normal cell cycle progression¹⁰⁸. Degradation of p130 is regulated by interaction with SKP2, a substrate recognition component of the SKP1–cullin–F box (SCF) ubiquitin ligase complex, in a similar manner to the SCF-regulated degradation of p27 (REF. ¹⁰⁹). Interestingly, degradation of p27 by SCF is negatively modulated by RB¹⁰⁹ such that interaction between active RB and the CDH1 subunit of the APC promotes APC-mediated degradation of SKP2 (REF. ¹¹⁰). In contrast to p130 and p27, RB is not itself degraded during normal cell cycle¹⁰⁸, although, as described below, redox stress during differentiation and senescence has emerged as a likely modulator of RB levels.

Acetylation of RB appears to be crucial to regulating its turnover. RB is acetylated by p300 on lysines 873 and 874 and this blocks its phosphorylation by Cdks and inhibits RB degradation¹¹²^,¹¹³. Conversely, SIRT1 (formerly known as SIR2α) has also been reported to be a potent deacetylase for RB¹¹⁴. SIRT1 is an NAD⁺-dependent deacetylase known to regulate p53 levels¹¹⁵^,¹¹⁶ and to also regulate the activity of Foxos and PGC-1α⁴⁹^,¹¹⁷^,¹¹⁸ (FIG. 3). Notably, SIRT1 interacts with the p300/CBP-associated factor (PCAF)–MYOD1 complex to inhibit muscle differentiation¹¹⁹, whereas RB acts to promote muscle differentiation through interaction with PCAF¹²⁰. Furthermore, hypoxia blocked the induction of RB levels during muscle differentiation¹²¹ suggesting that SIRT1 inhibits muscle differentiation in response to redox stress by promoting the turnover of RB. Alternatively, hypoxia may inhibit acetylation of RB through induction of the transcriptional co-activator CITED2, a FOXO3A and HIF target gene that binds directly to p300 to inhibit its activity¹²². Hypoxia has been shown to regulate the location of HSCs within the bone marrow niche¹²³ and to promote expansion of HSCs and neural stem cells¹²⁴^,¹²⁵ and, although this has been linked to a requirement for HIF1α to fully activate Notch target genes that are required for stem cell expansion and renewal¹²⁵, it will also be interesting to assess how hypoxia and ROS affect RB levels in stem cells.

Finally, seladin is a ROS-induced modulator of cellular p53 protein levels that interacts directly with p53 to prevent its targeting by the E3 ubiquitin ligase MDM2 for degradation¹¹¹, and it has been suggested that seladin may also act to stabilize RB levels in response to ROS induced by Ras activation¹¹¹.

RB and ROS in other systems

This Review has focused on the role of ROS in modulating the RB pathway in the haematopoietic system, but there are various studies that support a role for the RB pathway in the response to ROS in other cell systems. For example, induction of cellular senescence by activated Ras oncogenes is dependent on ROS¹²⁶, on DNA-damage responses¹²⁷^,¹²⁸ and on functional RB to induce cell cycle arrest¹²⁹. Ras-induced ROS production was blocked by inhibitors of Nox, and both NOX1 and NOX4 were upregulated in response to HRAS activation¹³⁰. Similar to the haematopoietic system⁵⁴, p38 is also a key mediator of Ras-induced ROS signalling in tumour cells¹³⁰ but, in contrast to primary HSCs, many tumour cells are deleted or mutated for INK4A or RB, so p38 activation in response to Ras-induced ROS frequently results in apoptosis¹³⁰, possibly mediated by phosphorylation and inactivation of BCL2 (REF. ⁵⁵).

The integrity of the RB pathway has also been identified as a key factor in stress responses that predict the progression of primary human breast cancer¹³¹^,¹³². High INK4A levels in combination with high Ki67 at the ductal carcinoma in situ stage of breast cancer was a strong indicator of tumour progression to invasive cancer¹³¹. Similarly, high levels of cyclooxygenase 2 (COX2, PTGS2) in combination with high Ki67 staining predicted breast cancer progression. Notably, transcriptional activation of COX2 in response to pro-inflammatory cytokines and bacterial lipopolysaccharides is mediated by ROS-induced p38 activity¹³³^–¹³⁵. COX2 expression induced INK4A expression and the ability of COX2 to induce cell cycle arrest was dependent on functional RB¹³¹. Thus, these studies suggest that ROS generation, p38 activation, COX2 and INK4A induction are linked to RB-dependent cell cycle arrest (FIG. 2) by a positive feedback loop that is disrupted in cancer, leading to increased COX2 and INK4A expression but continued proliferation.

Inactivation of the RB pathway is a common event in human cancers⁴^,¹³² and RB1-deficient cells are preferentially sensitive to DNA-damaging agents, such as cisplatin and etoposide, compared with control cells¹^,³. The sensitivity of RB1-deficient cells to genotoxic agents is associated with the increased ROS, increased PARP1 activity and NAD⁺ depletion that lead to necrotic cell death (H. Liu, J. R. Knabb, B. T. Spike & K.F.M, unpublished data). Cancer cells generally have higher levels of ROS than normal cells, in large part owing to their increased proliferation and metabolic rate, as well as the activity of oncogenes, such as Ras¹³⁶. Genotoxic agents used to treat cancer induce ROS as part of their modality, and inhibition of antioxidant activity in tumour cells can further sensitize them to drug-induced necrotic cell death¹³⁷. Thus, although ROS may have a role in the genesis of cancer through oxidative base damage of DNA and disruption of signalling pathways, they also present new avenues through which to specifically target tumour cells.

Summary

Cancer is largely a disease of post-reproductive years in susceptible animals and it is thus likely that tumour suppressor genes evolved as mediators of stress response mechanisms, as opposed to tumour suppressors per se. Given its central function in cell cycle checkpoint control, it was initially surprising that loss of Rb1 had such limited consequences for embryonic development but this may be explained if, similar to p53, RB function only becomes crucial under stressed conditions. This Review has highlighted the role of RB in the response to oxidative stress, based largely on work in the haematopoietic system but bringing in relevant analyses from other systems. What has emerged is a growing realization of the extent to which regulation of cell cycle by the RB pathway is coupled to rates of cellular metabolism, ROS levels and mitochondrial mass. Under normal circumstances, this may allow the cell to integrate mitochondrial biogenesis with cell cycle and to link proliferation to favourable levels of metabolites, with ROS acting as key signalling intermediates in the process. Given the accepted role of serum growth factors and DNA damage in modulating the RB pathway and cell cycle, it should not be surprising that the cell would also have evolved mechanisms to couple proliferation to sensors of metabolites and ROS levels. Sensitivity of the RB pathway to the oxidative state of the intracellular and extracellular milieu through ROS-induced INK4A expression and altered RB protein stability and activity is a new and physiologically significant perspective on the function of this important tumour suppressor. Importantly, these findings suggest that tumour cells lacking an intact RB pathway might be susceptible to killing by drugs that target metabolism or induce ROS.

Acknowledgements

The author is grateful to the J. P. McCarthy Foundation, the Aplastic Anaemia and MDS International Foundation and the National Heart Lung & Blood Institute (RO1 HL080262) for funding of work in her laboratory relating to oxidative stress, erythropoiesis and haematopoietic diseases. The author also gratefully acknowledges the experimental skills and intellectual input to work in the laboratory in the related research area by current laboratory members K. Tracy, J. Knabb and D. Glick and by former graduate students in the laboratory B. T. Spike and A. Dirlam.

Glossary


Haematopoietic stem cell	A cell residing at the apex of the cellular hierarchy in the haematopoietic system that gives rise to all other lineages and cell types in the blood system.

Non-cell-autonomous	Effects in tissues that are the consequence of a defect or altered phenotype in a different tissue or cell type.

Vav–Cre	Expression of the Cre recombinase under the control of the Vav promoter. which is restricted in its expression to haemangioblast-derived cell types. Thus Vav–Cre drives deletion of floxed alleles in embryonic and adult haematopoietic stem cells and their progeny, as well as in endothelial cells.

Poly(I)poly(C)	A form of double-stranded RNA that is a potent inducer of interferon and is used to activate the Mx1 promoter driving Cre recombinase expression.

Mx1–Cre	Expression of the Cre recombinase under the control of the silent Mx1 gene promoter: Cre is not expressed unless the transgenic mouse is challenged with agents that induce the interferon response, such as poly(I)poly(C). Expression is high in the haematopoietic system, liver and kidneys and lower in other cell types tested.

N-cadherin	A member of the cadherin family of cell–cell adhesion proteins bearing conserved structural motifs known as ‘cadherin repeats’. N-cadherin is highly expressed in mature neurons.

Repopulating capacity	The ability of haematopoietic tissue and cells to regenerate the blood system when transplanted into host animals that have had their bone marrow ablated through exposure to lethal or sublethal doses of ionizing irradiation or to cytotoxic drugs.

Myeloproliferation	Expansion of myeloid elements within the blood system.

Osteoclasts	Myeloid-derived cells within the bone marrow niche that interact with bone matrix and osteoblasts to influence stem cell development.

Antioxidants	Compounds and enzymes that neutralize ROS by accepting electrons from free radicals.

Fanconi anaemia	A cancer susceptibility syndrome in which genetically predisposed individuals are sensitized to DNA crosslinking agents, experience bone marrow failure and anaemia and show varying degrees of developmental abnormalities.

Poly(ADP-ribose)	A polymer generated by and conjugated to target proteins by members of the poly(ADP)-ribose polymerase resulting in increased negative charge and altered activities of modified proteins.

Pentose phosphate pathway	A series of enzymatic reactions in which NADPH is produced in cells by conversion of glucose-6-phsophate to ribulose-5-phosphate.

Fenton reaction	The oxidation of Fe²⁺ to generate Fe³⁺ and highly reactive hydroxyl radicals.

Ischaemia	Deprivation or insufficiency of blood supply to tissues associated with hypoxia and nutrient deprivation, frequently with necrotic cell death.

Endosteal surface	The inner surface of bone bordering the bone marrow cavity.

Ki67	Ki67 is a marker of proliferation that may have a role in ribosome biogenesis. Immunohistochemical staining for Ki67 on tumour sections and tissues is commonly used to mark out proliferating cells in situ.

Cyclooxygenase 2	(COX2). An enzyme with both peroxidase and dioxygenase activity involved in synthesis of prostaglandins from arachadonic acid, COX2 is activated by inflammation and upregulated in colorectal, breast and other cancers. COX2 inhibitors are used as anti-inflammatory drugs.

Footnotes

DATABASES

Entrez Gene: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene

National Cancer Institute: http://www.cancer.gov/bladder cancer | prostate cancer

National Cancer Institute Drug Dictionary: http://www.cancer.gov/drugdictionary/

5-fluorouracil | cisplatin | etoposide | mitomycin C

OMIM: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM

ataxia telangiectasia | Nijmegen breakage syndrome

UniProtKB: http://www.uniprot.org

ATR | beclin 1 | BMI1 | catalase | CD71 | CDH1 | CDK2 | CDK4 | CDK6 | CHK2 | CITED2 | cyclin D1 | cyclin D2 | E2F1 | E2F2 | E2F3 | E2F4 | FANCA | FANCC | FANCD2 | FANCG | FBXO5 | HRAS | INK4A | MAP2K3 | MAP2K4 | MAP2K6 | MAP3K5 | MDM2 | MSH2 | MYC | MYOD1 | N-cadherin | NIX | NOX1 | NOX4 | NRF1 | NRF2 | osteopontin | p130 | p21 | p27 | p300 | p53 | PARP1 | PCAF | PPARγ | PPARGC1α | PPARGC1β | PTEN | PTGS2 | RAD51 | RB | RBL1 | RBL2 | RELA | seladin | SIRT1 | SOD2 | TFAM | TFE3 | TIE2 | YY1

FURTHER INFORMATION

K. F. Macleod’s homepage: http://ben-may.bsd.uchicago.edu/bmi2/faculty/macleod/macleod.html

ALL LINKS ARE ACTIVE IN THE ONLINE PDF

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