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Acta Crystallogr Sect E Struct Rep Online. 2009 May 1; 65(Pt 5): o1059–o1060.
Published online 2009 April 18. doi:  10.1107/S1600536809013865
PMCID: PMC2977740
Copyright © Öztürk et al. 2009
(E,E)-1-(2-Hydroxy­imino-1-phenyl­ethyl­idene)semicarbazide monohydrate
Aslı Öztürk,a İlknur Babahan,b Nursabah Sarıkavaklı,b and Tuncer Hökeleka*
aHacettepe University, Department of Physics, 06800 Beytepe, Ankara, Turkey
bAdnan Menderes University, Department of Chemistry, 09010 Aydın, Turkey
Correspondence e-mail: merzifon/at/hacettepe.edu.tr
Received March 23, 2009; Accepted April 13, 2009.
This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
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Abstract
In the title compound, C9H10N4O2·H2O, the oxime unit has an E configuration, and an intra­molecular N—H(...)N hydrogen bond results in the formation of a planar five-membered ring, which is oriented with respect to the aromatic ring at a dihedral angle of 74.82 (17)°. In the crystal structure, inter­molecular O—H(...)O and N—H(...)O hydrogen bonds link the mol­ecules and R 2 2(8) ring motifs are apparent.
For general background, see: Balsamo et al. (1990 [triangle]); Marsman et al. (1999 [triangle]); Karle et al. (1996 [triangle]); Etter et al. (1990 [triangle]). For related structures, see: Sarıkavaklı et al. (2007 [triangle], 2008 [triangle]); Özel Güven et al. (2007 [triangle]); Hökelek, Batı et al. (2001 [triangle]); Hökelek, Zülfikaroğlu et al. (2001 [triangle]); Büyükgüngör et al. (2003 [triangle]); Hökelek et al. (2004 [triangle]); Hökelek et al. (2004a [triangle],b [triangle]). For reference structural data, see: Allen et al. (1987 [triangle]). For ring motifs, see: Bernstein et al. (1995 [triangle]).
An external file that holds a picture, illustration, etc. Object name is e-65-o1059-scheme1.jpg Object name is e-65-o1059-scheme1.jpg
Crystal data
  • C9H10N4O2·H2O
  • M r = 224.23
  • Triclinic, An external file that holds a picture, illustration, etc. Object name is e-65-o1059-efi1.jpg
  • a = 5.5593 (2) Å
  • b = 8.2701 (3) Å
  • c = 12.6193 (5) Å
  • α = 71.900 (3)°
  • β = 89.998 (5)°
  • γ = 78.538 (5)°
  • V = 539.29 (4) Å3
  • Z = 2
  • Mo Kα radiation
  • μ = 0.11 mm−1
  • T = 294 K
  • 0.40 × 0.25 × 0.20 mm
Data collection
  • Enraf–Nonius TurboCAD-4 diffractometer
  • Absorption correction: ψ scan (North et al., 1968 [triangle]) T min = 0.968, T max = 0.978
  • 1953 measured reflections
  • 1752 independent reflections
  • 867 reflections with I > 2σ(I)
  • R int = 0.048
  • 3 standard reflections frequency: 120 min intensity decay: 1%
Refinement
  • R[F 2 > 2σ(F 2)] = 0.060
  • wR(F 2) = 0.185
  • S = 1.05
  • 1752 reflections
  • 171 parameters
  • 5 restraints
  • H atoms treated by a mixture of independent and constrained refinement
  • Δρmax = 0.19 e Å−3
  • Δρmin = −0.34 e Å−3
Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 [triangle]); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 [triangle]); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 [triangle]); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 [triangle]); molecular graphics: ORTEP-3 (Farrugia, 1997 [triangle]) and Mercury (Macrae et al., 2006 [triangle]); software used to prepare material for publication: WinGX (Farrugia, 1999 [triangle]).
​
Table 1
Table 1
Hydrogen-bond geometry (Å, °)
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809013865/hb2932sup1.cif
Click here to view.(16K, cif)
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809013865/hb2932Isup2.hkl
Click here to view.(84K, hkl)
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Acknowledgments
The authors acknowledge the purchase of the CAD-4 diffractometer under grant DPT/TBAG1 of the Scientific and Technical Research Council of Turkey.
supplementary crystallographic information
Comment
Oxime and dioxime derivatives have a broad pharmacological activity spectrum, encompassing antibacterial, antidepressant and antifungal activities (e.g. Balsamo et al., 1990). The oxime (–C=N—OH) moiety is potentially ambidentate, with possibilities of coordination to metal ions through nitrogen and/or oxygen atoms. Oxime groups possess stronger hydrogen-bonding capabilities than alcohols, phenols, and carboxylic acids (Marsman et al., 1999), in which intermolecular hydrogen bonding combines moderate strength and directionality (Karle et al., 1996) in linking molecules to form supramolecular structures; this has received considerable attention with respect to directional noncovalent intermolecular interactions (Etter et al., 1990).
The structures of some oxime and dioxime derivatives have been determined in our laboratory, including those of 2,3-dimethylquinoxaline-dimethyl-glyoxime (1/1), [(II) Hökelek, Batı et al., 2001], 1-(2,6-dimethylphenylamino) propane-1,2-dione dioxime, [(III) (Hökelek, Zülfikaroğlu et al., 2001), N-hydroxy-2-oxo-2,N'-diphenylacetamidine, [(IV) (Büyükgüngör et al., 2003], N-(3,4-dichlorophenyl)-N'-hydroxy-2-oxo-2-phenylacetamidine, [(V) Hökelek et al., 2004], N-hydroxy-N'-(1-naphthyl)-2-phenylacetamidin-2-one [(VI) Hökelek et al., 2004a], N-(3-chloro-4-methylphenyl)-N'-hydroxy-2 -oxo-2-phenylacetamidine [(VII) Hökelek et al., 2004b], 2-(1H-benzimidazol -1-yl)-1-phenylethanone oxime [(VIII) Özel Güven et al., 2007], (1Z,2E)-1-(3,5-dimethyl-1H-pyrazole-1-yl)ethane-1,2-dione dioxime [(IX) Sarıkavaklı et al., 2007] and 2-hydroxyimino-1-phenylethanone thiosemicar bazone monohydrate [(X) Sarıkavaklı et al., 2008].
As part of our ongoing studies in this area, the structure determination of the title compound, (I), an oxime derivative with one semicarbazide, one phenylacetaldehyde oxime moieties and one uncoordinated water molecule, was carried out in order to investigate the strength of the hydrogen bonding capability of the oxime and semicarbazide groups and to compare the geometry of the oxime moiety with the previously reported ones.
In the molecule of the title compound, (I), (Fig. 1) the bond lengths (Allen et al., 1987) and angles are generally within normal ranges. Ring A (C1—C6) is, of course, planar. The intramolecular N—H···N hydrogen bond (Table 1) results in the formation of a planar five-membered ring B (N1—N3/C8/H3A). The dihedral angle between the planar rings is A/B = 74.82 (17)°.
In the crystal structure, intramolecular O—H···O and N—H···N and intermolecular O—H···O and N—H···O hydrogen bonds (Table 1) link the molecules through R22(8) ring motifs (Bernstein et al., 1995) (Fig. 2).
Experimental
Semicarbazide hydrochloride (1.12 g, 10 mmol) and sodium acetate (0.82 g, 10 mmol) were dissolved in double distilled water in the molar ratio 1:1. Then, the solution was mixed with a solution of 2-isonitrosoacetophenone (1.49 g, 10 mmol) in ethanol (10 ml) yielding a turbid mixture. The excess ethanol was added to get a clear solution and was stirred in a magnetic stirrer at room temparature for 4 h. The precipitate formed was filtered, washed with water and dried at room temperature in vacuum desiccator. It was recrystallized from ethanol/water (2:1) solution to yield colourless prisms of (I) (yield; 1.80 g, 85%, m.p. 409 K).
Refinement
Atoms H9 (for CH), H21 (for OH), H22 (for NH), H3A, H3B (for NH2) and H31, H32 (for H2O) were located in difference Fourier maps and refined isotropically, with restrains of O3—H31 = 0.88 (7), O3—H32 = 0.90 (3), N2—H22 = 0.82 (3), N3—H3A = 0.88 (3) Å and H31—O3—H32 = 105 (4)° [Uiso(H) = 0.064 (19) Å2 (for CH), 0.09 (3) Å2 (for OH), 0.040 (17) Å2 (for NH), 0.08 (2) Å2 (for NH2) and 0.125 Å2 (for H2O)]. The remaining H atoms were positioned geometrically with C—H = 0.93 Å and refined as riding with Uiso(H) = 1.2Ueq(C).
Figures
Fig. 1.
Fig. 1.
The molecular structure of (I) with displacement ellipsoids for the non-hydrogen atoms drawn at the 50% probability level. Hydrogen bonds are shown as dashed lines.
Fig. 2.
Fig. 2.
A partial packing diagram of (I). Hydrogen bonds are shown as dotted lines.
Crystal data
C9H10N4O2·H2OZ = 2
Mr = 224.23F(000) = 236
Triclinic, P1Dx = 1.381 Mg m−3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.5593 (2) ÅCell parameters from 25 reflections
b = 8.2701 (3) Åθ = 8.6–17.3°
c = 12.6193 (5) ŵ = 0.11 mm−1
α = 71.900 (3)°T = 294 K
β = 89.998 (5)°Prism, colorless
γ = 78.538 (5)°0.40 × 0.25 × 0.20 mm
V = 539.29 (4) Å3
Data collection
Enraf–Nonius TurboCAD-4 diffractometer867 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.048
graphiteθmax = 24.3°, θmin = 3.4°
Non–profiled ω scansh = −6→0
Absorption correction: ψ scan (North et al., 1968)k = −9→9
Tmin = 0.968, Tmax = 0.978l = −14→14
1953 measured reflections3 standard reflections every 120 min
1752 independent reflections intensity decay: 1%
Refinement
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.060Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.185H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0859P)2] where P = (Fo2 + 2Fc2)/3
1752 reflections(Δ/σ)max < 0.001
171 parametersΔρmax = 0.19 e Å−3
5 restraintsΔρmin = −0.34 e Å−3
Special details
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
xyzUiso*/Ueq
O10.5650 (8)−0.2847 (5)0.9749 (4)0.0635 (13)
O21.6136 (8)−0.2215 (5)0.5421 (4)0.0583 (13)
H211.658 (12)−0.131 (10)0.490 (6)0.09 (3)*
O30.2334 (12)−0.0741 (10)1.0657 (7)0.132 (3)
H310.344 (10)−0.122 (11)1.028 (6)0.125*
H320.088 (7)−0.084 (10)1.041 (7)0.125*
N11.0377 (8)−0.2812 (6)0.7948 (4)0.0456 (13)
N20.8573 (9)−0.2253 (6)0.8554 (4)0.0498 (14)
H220.823 (9)−0.128 (4)0.863 (4)0.040 (17)*
N30.7601 (11)−0.4938 (7)0.9070 (5)0.0594 (16)
H3A0.884 (8)−0.531 (8)0.872 (5)0.08 (2)*
H3B0.665 (11)−0.578 (9)0.942 (5)0.08 (2)*
N41.4358 (8)−0.1346 (5)0.5950 (4)0.0435 (13)
C11.0910 (10)0.0218 (7)0.7132 (5)0.0389 (14)
C21.2415 (11)0.0996 (7)0.7590 (5)0.0538 (17)
H21.38000.03170.80440.065*
C31.1895 (12)0.2758 (8)0.7384 (6)0.0646 (19)
H31.29050.32570.77190.077*
C40.9938 (13)0.3786 (8)0.6700 (6)0.0602 (18)
H40.96260.49870.65430.072*
C50.8426 (12)0.3024 (8)0.6244 (5)0.065 (2)
H50.70640.37160.57780.078*
C60.8891 (12)0.1243 (8)0.6466 (5)0.0591 (18)
H60.78290.07420.61620.071*
C71.1479 (10)−0.1688 (6)0.7314 (4)0.0387 (14)
C80.7189 (11)−0.3364 (7)0.9167 (5)0.0455 (15)
C91.3383 (11)−0.2382 (8)0.6696 (5)0.0444 (15)
H91.374 (10)−0.359 (9)0.687 (5)0.064 (19)*
Atomic displacement parameters (Å2)
U11U22U33U12U13U23
O10.066 (3)0.051 (3)0.078 (3)−0.018 (2)0.036 (3)−0.024 (2)
O20.062 (3)0.044 (3)0.064 (3)−0.005 (2)0.026 (2)−0.014 (2)
O30.106 (5)0.148 (6)0.173 (7)0.002 (5)0.008 (5)−0.111 (5)
N10.049 (3)0.041 (3)0.048 (3)−0.012 (2)0.017 (3)−0.013 (2)
N20.058 (3)0.036 (3)0.057 (3)−0.015 (3)0.019 (3)−0.014 (3)
N30.065 (4)0.043 (3)0.076 (4)−0.022 (3)0.030 (3)−0.019 (3)
N40.046 (3)0.037 (3)0.046 (3)−0.006 (2)0.009 (2)−0.012 (2)
C10.038 (3)0.035 (3)0.041 (3)−0.007 (3)0.011 (3)−0.010 (3)
C20.050 (4)0.042 (4)0.066 (4)−0.005 (3)−0.008 (3)−0.014 (3)
C30.062 (4)0.046 (4)0.089 (5)−0.016 (4)−0.003 (4)−0.024 (4)
C40.074 (5)0.035 (3)0.071 (5)−0.013 (4)0.013 (4)−0.016 (3)
C50.068 (5)0.045 (4)0.067 (5)0.010 (4)−0.011 (4)−0.007 (4)
C60.060 (4)0.045 (4)0.065 (4)−0.008 (3)−0.014 (4)−0.010 (3)
C70.043 (3)0.032 (3)0.037 (3)−0.009 (3)0.002 (3)−0.005 (3)
C80.049 (4)0.035 (3)0.046 (4)−0.009 (3)0.012 (3)−0.005 (3)
C90.051 (4)0.031 (3)0.051 (4)−0.011 (3)0.007 (3)−0.012 (3)
Geometric parameters (Å, °)
O1—C81.226 (6)C2—H20.9300
O2—N41.399 (5)C3—H30.9300
O2—H210.91 (8)C4—C31.352 (9)
O3—H310.88 (7)C4—C51.368 (9)
O3—H320.90 (3)C4—H40.9300
N1—C71.281 (6)C5—C61.381 (8)
N2—N11.357 (6)C5—H50.9300
N2—C81.369 (7)C6—H60.9300
N2—H220.82 (3)C7—C11.489 (7)
N3—H3A0.88 (3)C8—N31.320 (7)
N3—H3B0.96 (7)C9—N41.264 (7)
C1—C21.376 (8)C9—C71.447 (7)
C1—C61.365 (8)C9—H90.94 (6)
C2—C31.368 (8)
N4—O2—H21101 (4)C3—C4—C5118.6 (6)
H31—O3—H32105 (4)C3—C4—H4120.7
C7—N1—N2118.1 (5)C5—C4—H4120.7
N1—N2—C8120.5 (5)C4—C5—C6121.0 (6)
N1—N2—H22126 (4)C4—C5—H5119.5
C8—N2—H22113 (4)C6—C5—H5119.5
C8—N3—H3A122 (4)C1—C6—C5120.0 (6)
C8—N3—H3B123 (4)C1—C6—H6120.0
H3A—N3—H3B115 (6)C5—C6—H6120.0
C9—N4—O2112.3 (4)N1—C7—C1126.4 (5)
C2—C1—C7121.7 (5)N1—C7—C9114.9 (5)
C6—C1—C2118.6 (5)C9—C7—C1118.7 (5)
C6—C1—C7119.7 (5)O1—C8—N2119.1 (5)
C1—C2—H2119.7O1—C8—N3124.4 (6)
C3—C2—C1120.7 (6)N3—C8—N2116.5 (5)
C3—C2—H2119.7N4—C9—C7119.3 (5)
C2—C3—H3119.5N4—C9—H9125 (4)
C4—C3—C2121.1 (6)C7—C9—H9116 (3)
C4—C3—H3119.5
N2—N1—C7—C1−2.8 (8)C5—C4—C3—C22.2 (10)
N2—N1—C7—C9179.9 (5)C3—C4—C5—C6−0.6 (10)
C8—N2—N1—C7174.2 (5)C4—C5—C6—C1−1.2 (10)
N1—N2—C8—O1176.6 (5)N1—C7—C1—C2106.3 (7)
N1—N2—C8—N3−4.4 (8)N1—C7—C1—C6−75.8 (8)
C6—C1—C2—C30.1 (9)C9—C7—C1—C2−76.5 (7)
C7—C1—C2—C3178.0 (6)C9—C7—C1—C6101.4 (6)
C2—C1—C6—C51.4 (9)N4—C9—C7—N1171.4 (5)
C7—C1—C6—C5−176.5 (6)N4—C9—C7—C1−6.1 (8)
C1—C2—C3—C4−2.0 (10)C7—C9—N4—O2−179.2 (5)
Hydrogen-bond geometry (Å, °)
D—H···AD—HH···AD···AD—H···A
N3—H3A···N10.88 (3)2.32 (6)2.647 (8)102 (5)
O3—H31···O10.88 (7)1.92 (8)2.776 (9)164 (8)
O3—H32···O3i0.90 (3)2.17 (7)2.909 (11)140 (7)
N2—H22···O3ii0.82 (3)2.10 (4)2.901 (10)162 (5)
N3—H3B···O1iii0.96 (7)1.96 (6)2.909 (8)169 (6)
Symmetry codes: (i) −x, −y, −z+2; (ii) −x+1, −y, −z+2; (iii) −x+1, −y−1, −z+2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB2932).
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