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Functional & Integrative Genomics
Funct Integr Genomics. 2010 November; 10(4): 603–608.
Published online 2010 July 31. doi:  10.1007/s10142-010-0185-0
PMCID: PMC2970806

Inducing chromosome pairing through premature condensation: analysis of wheat interspecific hybrids


At the onset of meiosis, chromosomes first decondense and then condense as the process of recognition and intimate pairing occurs between homologous chromosomes. We show here that okadaic acid, a drug known to induce chromosome condensation, can be introduced into wheat interspecific hybrids prior to meiosis to induce chromosome pairing. This pairing occurs in the presence of the Ph1 locus, which usually suppresses pairing of related chromosomes and which we show here delays condensation. Thus the timing of chromosome condensation during the onset of meiosis is an important factor in controlling chromosome pairing.

Electronic supplementary material

The online version of this article (doi:10.1007/s10142-010-0185-0) contains supplementary material, which is available to authorized users.

Keywords: Ph1 locus, Chromatin, Meiosis, Prebreeding


Many plant species are polyploid. Despite possessing multiple genomes, only true homologous chromosomes pair during meiosis. This correct pairing involves suppressing pairing between the multiple sets of related chromosomes. Understanding the basis for this pairing suppression has a practical application potentially enabling the effect to be switched on and off, thereby enhancing breeding strategies (Able and Langridge 2006). The pairing process involves the telomeres of the chromosomes clustering to form a bouquet at the onset of meiosis. Chromosomes then initiate intimate pairing or synapsis from the telomere regions. Early meiosis is also associated with marked changes in chromosome structure. Chromosome pairing in wheat is controlled by a single major locus, Ph1 (reviewed by Yousafzai et al. 2010a). Wheat lacking the Ph1 locus accumulates chromosome rearrangements and eventually becomes infertile (Sanchez-Moran et al. 2001). Sexual hybridisation between wheat and a wild relative generally produces an interspecific hybrid containing a haploid set of only related chromosomes, in which there is no chromosome pairing due to the presence of the Ph1 locus (Riley et al. 1959). Molecular analysis of the Ph1 locus has defined it to a region on chromosome 5B containing a cluster of seven cdc2-like genes (Griffiths et al. 2006; Al-Kaff et al. 2008), with homology to cdk2 also required for correct pairing in mammals (Yousafzai et al. 2010b; Viera et al. 2009). We have exploited our understanding of the Ph1 locus to demonstrate here that regulation of chromosome condensation and pairing between related chromosomes are linked.

Materials and methods

Plant material

The tillers used for this study came from hexaploid wheat, Triticum aestivum cv. Beaver, crosses between hexaploid wheat cv. Hobbit sib and rye (Secale cereale) cv. Petkus and also between T. aestivum cv. Chinese Spring and rye cv. Petkus either carrying or lacking the Ph1 locus.

Sectioning, fluorescence in situ hybridisation, microscopy and image processing

The tissue sectioning, specimen preparation, in situ hybridisation, fluorescence microscopy and image processing have all been described previously (Prieto et al. 2007). Axial element lengths were determined using ImageJ by counting the total pixels of skeletonised Asy1-labelled elements. The TaAsy1 antibody was kindly provided by Dr. Jason Able and the fluorescence immuno-localisation was performed as described in Boden et al., using the rabbit anti-TaAsy1 antibody and AlexFluor 568 conjugated donkey anti-rabbit antibody (Boden et al. 2009).

Antisense oligodeoxynucleotide inhibition and okadaic acid treatment using a detached tiller method

Tillers containing an immature pre-meiotic spike were detached immediately after an 8-h dark period and transferred immediately to a solution of 100 mM sucrose and antisense oligodeoxynucleotides (ODNs; combination of either four sense or antisense ODNs at 10 μM each). The cut tillers in individual tubes were then placed in the dark for 3 to 4 days (until the spike reached meiosis), after which the dark cover was removed for 2–3 h and spikes were then dissected out. Anthers with pollen mother cells in meiosis were removed and fixed in one part glacial acetic acid to three parts ethanol and subsequently stained. Excised Feulgen stained anthers were squashed in aceto-carmine and examined using a Nikon Microphot-SA microscope and Optem 5X SC50 image capture system.

The detached tiller method used for okadaic acid (OA) uptake was carried out as described above, with the following modifications. Detached tillers were incubated for 24 h in the dark and in 100 mM sucrose solution containing dilutions of a 10 mM OA (Sigma) stock solution to give a concentration range from 100 nM to 1 μM. Each treatment was repeated twice to nine times in separate experiments. Analysis of variance (ANOVA) was carried out using generalised linear models in Genstat 11th Edition.

Results and discussion

We have assessed whether it is possible to induce a Ph1 mutant pairing phenotype by delivering antisense oligodeoxynucleotides to silence these cdk-like genes at the onset of meiosis via a detached tiller incubation approach as described previously by Sun et al.2005. Such an analysis would also confirm the involvement of these cdk-like genes in meiosis. The sense and antisense ODNs used were designed against the conserved regions of the Ph1 cdk-like genes, thus targeting all copies of the genes. Four 18 nucleotide-long antisense ODNs (and their corresponding sense copies) covered the start codon (ATG), a highly conserved region and the putative cyclin binding (DARTLRE) region of the cdk-like genes (Supplementary Fig. 1).

Meiosis was compared in immature anthers collected from sense and antisense ODN-treated detached wheat tillers. In sense ODN-treated tillers, first and second divisions of meiosis appeared normal. Meiocytes within each locule were all synchronised at the same stage of meiosis, and metaphase I showed normal pairing. However, in some anthers, young pollen cells appeared to contain micronuclei and a few binucleate young pollen cells were also seen. In antisense ODN-treated detached tillers, the meiocytes were asynchronous in more than 70% of the locules (Supplementary Fig. 2). The abnormalities were most pronounced during late stages of the second division. These included tetrads with missing nuclei and presence of micronuclei in the microspores (Supplementary Fig. 2). Chromosome pairing at metaphase I appeared normal except for the presence of univalents amongst the paired ring bivalents. This phenotype is similar to those meiotic abnormalities reported when disrupting the function of CDKA, the cdc2/cdc28 homologue in Arabidopsis (Dissmeyer et al. 2007). Although the antisense ODN approach did not result in a phenotype that mimics that of the Ph1 deletion mutant, these observations did suggest that the Ph1 cdk-like genes play an important role in meiosis.

Expression studies revealed that deletion of the Ph1 cdk-like genes on the 5B chromosome results in increased transcription from the cdk-like genes on the 5A and 5D chromosomes (Al-Kaff et al. 2008), suggesting that cdk activity is increased rather than decreased by the absence of Ph1. Increased cdk activity can be associated with premature chromosome condensation (Furuno et al. 1999). At the onset of meiosis, as the telomeres cluster into a bouquet, axial elements are generated by the condensation of sister chromatids onto a meiotic specific protein core that in plants contains ASY1, a homologue of Hop1p in yeast (Hollingsworth and Ponte 1997). 3-D immunofluorescence images of meiocytes labelled with anti-ASY1 revealed that in wheat-rye interspecific hybrids, chromosomes were less condensed when Ph1 was present than when it was absent both at the late telomere bouquet stage and when the bouquet disperses (Fig. 1; Supplementary Fig. 3). At both stages there were significant differences (P < 0.05) in the lengths of the labelled axial elements in the presence and absence of Ph1. Thus, in the absence of Ph1 in wheat interspecific hybrids, chromosomes condense earlier and chromosome pairing is induced between the related chromosomes. We suggest these two observations are linked and are consistent with the effect of Ph1 absence being an over-expression phenotype. It implies that the timing of chromosome condensation may be important in controlling the pairing of related chromosomes. Is it possible to induce early chromosome condensation during meiosis and hence phenocopy the Ph1 effect? CDKs phosphorylate proteins on serine and threonine amino acid residues and are involved in cell cycle regulation. In the absence of Ph1, cdk-like genes are over-expressed and there is an effect on chromosome condensation at early stages of meiosis. The phosphorylation targets for the Ph1 cdk-like proteins are most likely to be chromatin components that would allow these chromosome dynamic changes. Okadaic acid can be used to simulate the effects of the CDKs. OA is a potent protein serine/threonine phosphatase inhibitor which activates CDKs and induces premature chromosome condensation (Yamashita et al. 1990). We therefore investigated whether OA treatment could induce chromosome pairing in these hybrids even in the presence of Ph1.

Fig. 1
TaASY1 localisation (red) at early meiosis in wild-type (a, c, e, g) and Ph1 mutant wheat-rye F1 wheat (b, d, f, h). Meiocytes at pre-telomere bouquet (a, b), early bouquet (c, d), late bouquet (e, f), as bouquet disperses (g, h). Scale bars 5 μm ...

Detached tillers of wheat–rye interspecific hybrid plants, which contain a haploid number of wheat and rye chromosomes (28 in total) were incubated in a sucrose solution with and without OA. Analysis of chromosome spreads at metaphase I revealed that OA affected chromosome pairing in a dose-dependent manner. There were very few chromosome arm associations observed in the sucrose control with most chromosomes visualised as univalents. However, as the OA concentration was increased from 100 nM to 1 μM, the number of chromosome associations also increased, with the mean number of univalents per cell decreasing from 10 down to four for treatments with 1 μM OA and the mean number of ungrouped chromosomes (a group being defined as three or more associated chromosomes) also decreasing from 15.3 at 100 nM to 6.9 with 1 μM OA (Supplementary Fig. 4). ANOVA revealed that the effect of OA on the number of univalents and ungrouped chromosomes per cell was highly significant (P < 0.001). However this analysis also revealed that treatments with concentrations greater than 200 nM OA produce few rod bivalents suggesting little potential for genetic exchange. In contrast, treatment with 100 nM OA resulted in a less marked chromosome association, but more importantly a strong increase in the number of rod bivalents (Fig. 2). Rod bivalent pairing is induced by timing the 100 nM treatment to a period within 12 h of the onset of meiosis during pre-meiotic S phase. However, this pairing is not observed in every treated anther within the spike, which suggests that the window for effective treatment is quite narrow. The chromosome pairing and associated multivalent formations observed at metaphase I after 100 nM treatment were similar to the chromosome pairing behaviour observed when Ph1 is deleted in the wheat–rye interspecific hybrid (Fig. 2). In 30 metaphase I chromosome spreads, an average of four chromosome arm associations per cell were observed following 100 nM OA treatment compared with an average of less than one arm association per cell following sucrose treatment. The Ph1 mutant has an average of seven arm associations per cell at metaphase I (Fig. 2; Dhalinal et al. 1977). This indicated that with the correct concentration of OA, chromosome pairing can be induced in wheat–rye interspecific hybrid plants even in the presence of the Ph1 locus, mimicking the pairing observed in the absence of Ph1. Thus this approach of treating detached wheat tillers with a drug can in principal provide a powerful method to enhance genetic exchange between chromosomes.

Fig. 2
Induction of chromosome pairing in wheat-rye hybrids. Metaphase I chromosome spread from the hybrid with Ph1 (a) and without Ph1 (b). Metaphase I chromosome spread from detached tillers treated with sucrose (c, d) and with 100 nM OA (e, f, g, h). Scale ...

Electronic supplementary material

Below is the link to the electronic supplementary material.

Fig. 1(30K, doc)

Alignment of sense and antisense ODNs with three wheat cdk-like nucleotide and peptide sequences with full open reading frames. Arrows point towards the 3’ end of each oligo. The cdk DARTLE region is highlighted in yellow (DOC 30 kb)

Fig. 2(3.0M, tif)

Disruption of wheat meiotic division by antisense ODNs. Asynchronous pollen mother cells (a), normal tetrads (b), abnormal tetrads (c), normal microspores (d), abnormal microspores with micronuclei (e) (TIFF 3132 kb)

Fig. 3(6.2M, tif)

TaASY1 localisation at early meiosis in wild-type (a, c, e, g) and Ph1 mutant wheat-rye F1 wheat (b, d, f, h). DAPI (blue), DAPI and ASYI labelled (blue-red) meiocytes and skeletonised axial element images for pixel counting at pre-telomere bouquet (a, b), early bouquet (c, d), late bouquet (e, f), as the bouquet disperses (g, h). Scale bars, 5 μm (TIFF 6438 kb)

Fig. 4(5.7M, tif)

Induction of chromosome associations in wheat-rye F1 hybrids with increasing OA concentrations. Metaphase I chromosome spread from a detached tiller treated with sucrose only (a), 100 nM OA (b), 200 nM OA (c), 300 nM OA (d), 400 nM OA (e), 500 nM OA (f), 600 nM OA (g), 750 nM OA (h) and 1 μM OA (i). Scale bar 10 μm (TIFF 5934 kb)


This work was supported by the UK Biotechnology and Biological Sciences Research Council. The authors would like to thank Dr Jason Able (University of Adelaide) who kindly provided the TaAsy1 antibody.

Open Access This article is distributed under the terms of the Creative Commons Attribution Noncommercial License which permits any noncommercial use, distribution, and reproduction in any medium, provided the original author(s) and source are credited.


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