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Acta Crystallogr Sect E Struct Rep Online. 2009 October 1; 65(Pt 10): o2397.
Published online 2009 September 9. doi:  10.1107/S1600536809034904
PMCID: PMC2970394

(S)-1-Methoxy­carbonyl-3-(4-nitro­phen­yl)propan-2-aminium bromide

Abstract

In the crystal structure of the title compound, C10H13N2O4 +·Br, inter­molecular N—H(...)Br and N—H(...)(O,Br) hydrogen bonds link the cations and anions into a two-dimensional network parallel to the ab plane.

Related literature

For applications of metal-organic coordination compounds, see: Xiong et al. (1999 [triangle]); Fu, Zhang et al. (2008 [triangle]); Fu & Xiong (2008 [triangle]). For metal-organic frameworks with amino acid deriv­atives, see: Chen et al. (2000 [triangle]); Xie et al. (2002 [triangle]); Fu et al. (2007 [triangle]).

An external file that holds a picture, illustration, etc.
Object name is e-65-o2397-scheme1.jpg

Experimental

Crystal data

  • C10H13N2O4 +·Br
  • M r = 305.13
  • Monoclinic, An external file that holds a picture, illustration, etc.
Object name is e-65-o2397-efi1.jpg
  • a = 4.9323 (10) Å
  • b = 8.6233 (17) Å
  • c = 15.226 (3) Å
  • β = 95.77 (3)°
  • V = 644.3 (2) Å3
  • Z = 2
  • Mo Kα radiation
  • μ = 3.20 mm−1
  • T = 298 K
  • 0.40 × 0.05 × 0.05 mm

Data collection

  • Rigaku Mercury2 diffractometer
  • Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 [triangle]) T min = 0.90, T max = 1.00
  • 6658 measured reflections
  • 2917 independent reflections
  • 2532 reflections with I > 2σ(I)
  • R int = 0.055

Refinement

  • R[F 2 > 2σ(F 2)] = 0.042
  • wR(F 2) = 0.085
  • S = 1.04
  • 2917 reflections
  • 154 parameters
  • 1 restraint
  • H-atom parameters constrained
  • Δρmax = 0.62 e Å−3
  • Δρmin = −0.30 e Å−3
  • Absolute structure: Flack (1983 [triangle]), 1202 Friedel pairs
  • Flack parameter: 0.008 (5)

Data collection: CrystalClear (Rigaku, 2005 [triangle]); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 [triangle]); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 [triangle]); molecular graphics: SHELXTL/PC (Sheldrick, 2008 [triangle]); software used to prepare material for publication: SHELXTL/PC.

Table 1
Hydrogen-bond geometry (Å, °)

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809034904/cv2604sup1.cif

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809034904/cv2604Isup2.hkl

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Acknowledgments

This work was supported by a start-up grant from Southeast University to Professor Ren-Gen Xiong.

supplementary crystallographic information

Comment

The construction of metal-organic coordination compounds has attracted much attention owing to potential functions, such as permittivity, fluorescence, magnetism and optical properties (Fu, Zhang et al., 2008; Xiong et al., 1999; Fu & Xiong, 2008). Amino acid derivatives constitute a class of excellent ligands for the construction of novel metal-organic frameworks (Fu et al., 2007; Xie et al., 2002; Chen et al., 2000). We report here the crystal structure of the title compound.

The title compound is built up from a Br- anion and a protonated amino group cation (Fig.1). The nitro group and the benzene ring are nearly coplanar being twisted to each other by 2.39 (6)°. The S absolute configuration at C8 is deduced from the synthetic pathway and confirmed by the X-ray analysis.

The crystal packing is stabilized by N—H···Br and N—H···O H-bonds (Table 1) building an infinite two-dimensional network parallel to ab plane (Fig.2).

Experimental

Under nitrogen protection, methyl 2-amino-3-(4-nitrophenyl)propanoate (30 mmol), nitric acid (50 mmol) and sulfuric acid (20 mmol) were added in a flask. The mixture was stirred at 110 °C for 3 hours. The resulting solution was poured into ice water (100mL), then filtered and washed with distilled water. The crude product was recrystallized with distilled water by adding 4ml HBr to yield colourless needle-like crystals, suitable for X-ray analysis.

Refinement

C-bound H atoms were positioned geometrically and treated as riding, with C-H = 0.93 Å (aromatic), C-H = 0.96 Å (methyl), C-H = 0.97 Å (methylene) and C-H = 0.98 Å (methine), with Uiso(H) = 1.2Ueq(C) and Uiso(H) = 1.5Ueq(methyl). The H atoms of amine group were located in difference Fourier maps and at the last stage of refinement they were treated as riding, with Uiso(H) = 1.5Ueq(N).

Figures

Fig. 1.
A view of the title compound with the atomic numbering scheme. Displacement ellipsoids are drawn at the 30% probability level.
Fig. 2.
A portion of the crystal packing, viewed along the c axis. Dashed lines denote N—H···Br and N—H···O hydrogen bonds. H atoms not involved in hydrogen bonding have been omitted for clarity. ...

Crystal data

C10H13N2O4+·BrF(000) = 308
Mr = 305.13Dx = 1.573 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 2532 reflections
a = 4.9323 (10) Åθ = 3.6–27.5°
b = 8.6233 (17) ŵ = 3.20 mm1
c = 15.226 (3) ÅT = 298 K
β = 95.77 (3)°Needle, colourless
V = 644.3 (2) Å30.40 × 0.05 × 0.05 mm
Z = 2

Data collection

Rigaku Mercury2 diffractometer2917 independent reflections
Radiation source: fine-focus sealed tube2532 reflections with I > 2σ(I)
graphiteRint = 0.055
Detector resolution: 13.6612 pixels mm-1θmax = 27.5°, θmin = 3.6°
CCD profile fitting scansh = −6→6
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −11→11
Tmin = 0.90, Tmax = 1.00l = −19→19
6658 measured reflections

Refinement

Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.042H-atom parameters constrained
wR(F2) = 0.085w = 1/[σ2(Fo2)]
S = 1.03(Δ/σ)max < 0.001
2917 reflectionsΔρmax = 0.62 e Å3
154 parametersΔρmin = −0.30 e Å3
1 restraintAbsolute structure: Flack (1983), 1202 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.008 (5)

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

xyzUiso*/Ueq
C60.4984 (8)0.4001 (4)0.7127 (2)0.0390 (9)
C20.8039 (10)0.2806 (6)0.6203 (3)0.0565 (12)
H20.93590.20630.61220.068*
C70.3794 (8)0.4113 (5)0.7995 (2)0.0438 (10)
H7A0.33490.30810.81880.053*
H7B0.21180.47080.79160.053*
C30.7186 (9)0.3798 (6)0.5544 (3)0.0527 (12)
C50.4128 (9)0.5000 (5)0.6421 (3)0.0554 (11)
H50.27960.57420.64890.067*
C40.5236 (10)0.4886 (6)0.5644 (3)0.0642 (15)
H40.46670.55500.51800.077*
C10.6940 (9)0.2910 (5)0.6986 (3)0.0481 (11)
H10.75230.22260.74390.058*
O10.7970 (5)0.6832 (4)0.79876 (16)0.0488 (7)
C90.6074 (6)0.6629 (6)0.85319 (19)0.0360 (7)
O20.4710 (6)0.7600 (3)0.88109 (18)0.0495 (7)
C80.5764 (8)0.4886 (4)0.8712 (2)0.0325 (8)
H80.75510.43840.87310.039*
N20.8359 (11)0.3691 (6)0.4697 (3)0.0759 (13)
O31.0072 (9)0.2696 (7)0.4603 (2)0.1077 (17)
O40.7514 (11)0.4561 (6)0.4108 (3)0.1200 (18)
C100.8330 (12)0.8435 (6)0.7701 (3)0.0717 (15)
H10A0.97360.84720.73080.107*
H10B0.88370.90760.82060.107*
H10C0.66530.88080.73990.107*
N10.4679 (6)0.4728 (4)0.95973 (18)0.0391 (8)
H1A0.60150.47361.00210.059*
H1B0.32450.54280.95910.059*
H1C0.38350.36720.96070.059*
Br10.99538 (6)0.66497 (4)0.05395 (2)0.04632 (13)

Atomic displacement parameters (Å2)

U11U22U33U12U13U23
C60.045 (2)0.043 (2)0.029 (2)−0.0124 (19)0.0045 (17)−0.0031 (18)
C20.065 (3)0.061 (3)0.045 (3)0.003 (2)0.009 (2)−0.018 (2)
C70.042 (2)0.050 (2)0.041 (2)−0.014 (2)0.0121 (18)−0.006 (2)
C30.064 (3)0.064 (3)0.032 (2)−0.019 (2)0.015 (2)−0.014 (2)
C50.062 (3)0.056 (3)0.049 (3)0.007 (2)0.006 (2)0.002 (2)
C40.096 (4)0.064 (3)0.033 (3)−0.005 (3)0.010 (3)0.008 (2)
C10.063 (3)0.041 (2)0.040 (2)0.003 (2)0.005 (2)−0.0061 (19)
O10.0659 (16)0.0393 (17)0.0455 (14)−0.0094 (17)0.0266 (12)−0.0001 (15)
C90.0413 (16)0.0386 (16)0.0280 (16)−0.001 (3)0.0032 (13)0.001 (2)
O20.0603 (18)0.0379 (16)0.0533 (18)0.0130 (15)0.0201 (14)0.0078 (14)
C80.039 (2)0.0319 (19)0.0278 (19)0.0033 (17)0.0099 (15)−0.0005 (16)
N20.098 (4)0.094 (3)0.039 (3)−0.028 (3)0.024 (3)−0.021 (2)
O30.109 (4)0.151 (5)0.070 (3)−0.003 (3)0.044 (3)−0.034 (3)
O40.177 (5)0.142 (4)0.049 (3)−0.017 (4)0.048 (3)0.001 (3)
C100.103 (4)0.058 (3)0.059 (3)−0.015 (3)0.031 (3)0.010 (2)
N10.054 (2)0.0350 (17)0.0299 (17)0.0033 (15)0.0137 (15)0.0039 (14)
Br10.0471 (2)0.0436 (2)0.0490 (2)0.0020 (3)0.00881 (15)−0.0088 (3)

Geometric parameters (Å, °)

C6—C11.380 (6)O1—C91.322 (4)
C6—C51.408 (5)O1—C101.466 (6)
C6—C71.503 (5)C9—O21.180 (5)
C2—C31.353 (6)C9—C81.538 (6)
C2—C11.363 (5)C8—N11.506 (4)
C2—H20.9300C8—H80.9800
C7—C81.538 (5)N2—O41.210 (6)
C7—H7A0.9700N2—O31.223 (6)
C7—H7B0.9700C10—H10A0.9600
C3—C41.363 (6)C10—H10B0.9600
C3—N21.468 (6)C10—H10C0.9600
C5—C41.356 (5)N1—H1A0.8742
C5—H50.9300N1—H1B0.9289
C4—H40.9300N1—H1C1.0023
C1—H10.9300
C1—C6—C5117.4 (4)O2—C9—O1126.6 (5)
C1—C6—C7121.4 (4)O2—C9—C8124.0 (3)
C5—C6—C7121.2 (4)O1—C9—C8109.3 (4)
C3—C2—C1119.1 (4)N1—C8—C9107.4 (3)
C3—C2—H2120.4N1—C8—C7109.9 (3)
C1—C2—H2120.4C9—C8—C7111.4 (3)
C6—C7—C8112.1 (3)N1—C8—H8109.4
C6—C7—H7A109.2C9—C8—H8109.4
C8—C7—H7A109.2C7—C8—H8109.4
C6—C7—H7B109.2O4—N2—O3122.6 (5)
C8—C7—H7B109.2O4—N2—C3118.3 (6)
H7A—C7—H7B107.9O3—N2—C3119.0 (5)
C2—C3—C4121.5 (4)O1—C10—H10A109.5
C2—C3—N2119.4 (5)O1—C10—H10B109.5
C4—C3—N2119.1 (5)H10A—C10—H10B109.5
C4—C5—C6120.3 (4)O1—C10—H10C109.5
C4—C5—H5119.8H10A—C10—H10C109.5
C6—C5—H5119.8H10B—C10—H10C109.5
C5—C4—C3119.9 (4)C8—N1—H1A110.5
C5—C4—H4120.1C8—N1—H1B105.7
C3—C4—H4120.1H1A—N1—H1B121.3
C2—C1—C6121.8 (4)C8—N1—H1C106.3
C2—C1—H1119.1H1A—N1—H1C106.2
C6—C1—H1119.1H1B—N1—H1C105.9
C9—O1—C10115.2 (4)
C1—C6—C7—C875.9 (5)C10—O1—C9—O2−1.2 (5)
C5—C6—C7—C8−104.6 (4)C10—O1—C9—C8175.3 (3)
C1—C2—C3—C4−0.6 (7)O2—C9—C8—N1−29.0 (4)
C1—C2—C3—N2−179.9 (4)O1—C9—C8—N1154.3 (3)
C1—C6—C5—C4−0.8 (6)O2—C9—C8—C791.3 (4)
C7—C6—C5—C4179.7 (4)O1—C9—C8—C7−85.4 (3)
C6—C5—C4—C30.1 (7)C6—C7—C8—N1−170.5 (3)
C2—C3—C4—C50.6 (7)C6—C7—C8—C970.7 (4)
N2—C3—C4—C5179.9 (4)C2—C3—N2—O4178.0 (5)
C3—C2—C1—C6−0.2 (7)C4—C3—N2—O4−1.3 (7)
C5—C6—C1—C20.9 (6)C2—C3—N2—O30.6 (7)
C7—C6—C1—C2−179.7 (4)C4—C3—N2—O3−178.7 (5)

Hydrogen-bond geometry (Å, °)

D—H···AD—HH···AD···AD—H···A
N1—H1A···O2i0.872.613.031 (4)111
N1—H1A···Br1ii0.872.613.290 (3)135
N1—H1B···Br1iii0.932.513.303 (3)143
N1—H1C···Br1iv1.002.553.495 (3)157

Symmetry codes: (i) −x+1, y−1/2, −z+2; (ii) x, y, z+1; (iii) x−1, y, z+1; (iv) −x+1, y−1/2, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: CV2604).

References

  • Chen, Z.-F., Xiong, R.-G., Zuo, J.-L., Guo, Z.-L., You, X.-Z. & Fun, H.-K. (2000). J. Chem. Soc. Dalton Trans. pp. 4013–4014.
  • Flack, H. D. (1983). Acta Cryst. A39, 876–881.
  • Fu, D.-W., Song, Y.-M., Wang, G.-X., Ye, Q., Xiong, R.-G., Akutagawa, T., Nakamura, T., Chan, P. W. H. & Huang, S.-P. D. (2007). J. Am. Chem. Soc.129, 5346-5347. [PubMed]
  • Fu, D.-W. & Xiong, R.-G. (2008). Dalton Trans. pp. 3946–3948. [PubMed]
  • Fu, D.-W., Zhang, W. & Xiong, R.-G. (2008). Cryst. Growth Des.8, 3461–3464.
  • Rigaku (2005). CrystalClear Rigaku Corporation, Tokyo, Japan.
  • Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [PubMed]
  • Xie, Y.-R., Xiong, R.-G., Xue, X., Chen, X.-T., Xue, Z.-L. & You, X.-Z. (2002). Inorg. Chem.41, 3323–3326. [PubMed]
  • Xiong, R.-G., Zuo, J.-L., You, X.-Z., Fun, H.-K. & Raj, S. S. S. (1999). New J. Chem.23, 1051–1052.

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