Transgenic mice
All animal handling was performed in compliance with the local and national animal care guidelines and approved by the University of Rochester Committee on Animal Resources and the University of Michigan Committee on Use and Care of Animals.
NgR1, PirB and
p75 mutant mice used for our studies have been described previously (
Lee et al., 1992;
Ujike et al., 2002;
Zheng et al., 2005). The
PirB mutant mouse line used in this study carries a null allele (
Ujike et al., 2002) and is distinct from the transmembrane domain deletion mutant
PirB-TM (
Syken et al., 2006). Mice were either housed in the transgenic core facility of the University of Michigan (
NgR1 and
PirB colonies) or the University of Rochester (
NgR1, PirB, and
p75 colonies). All mice were kept on a C57bl/6 background and housed in a 12 hour light-dark cycle. Mice mutant for
NgR1 and
p75 were genotyped by PCR analysis of tail biopsies (
Venkatesh et al., 2007). Primers for
PirB genotyping included,
PirB-5': 5’-GTG GCC TTC ATC CTG TTC CTC-3’,
PirB-3': 5’-CCT GGT TAT GGG CTC TTC AGC-3’, and
PirB-Neo: 5’-CTC GTG CTT TAC GGT ATC GCC-3’ and were used as described (
Ujike et al., 2002).
Reporter gene expression analyses
In
NgR1 mutant mice, exon 2 of the
NgR1 gene has been replaced by a
tau-lacZ reporter cassette (
Zheng et al., 2005). For
NgR1 reporter gene expression studies, brains from 6–8 week old
NgR1 heterozygous mice (
NgR1+/taulacZ) were quickly removed and flash-frozen in dry-ice cooled isopentane. Cryosections of forebrain tissue were cut at 25 µm and mounted on Superfrost-plus microscope slides (Fisher). Sections were rinsed in phosphate buffered saline (PBS: 137 mM NaCl, 2.7 mM KCl, 1.8 mM KH
2PO
4, 1.0 mM Na
2HPO
4, pH 7.4) and developed overnight in 1mg/ml X-Gal, 5 mM K
3Fe(CN)
6, 5 mM K
4Fe(CN)
6, 2 mM Mg
2+ in PBS at 37°C.
mRNA in situ hybridization
To visualize the mRNA expression pattern of
PirB in 3 month old mouse brain tissue, cryosections (25 µm) of wild-type and mutant mice were cut and processed as described previously (
Giger et al., 1996). To reduce potential cross-reactivity with
PirA transcripts, an antisense
PirB cRNA probe directed against the less conserved C-terminal portion of PirB was generated. T7 RNA polymerase was used for
in vitro run-off transcription of mouse
PirB cDNA (Open BioSystems) from nucleotides 1736–2526. To confirm specificity of the riboprobe, sections of
PirB wild-type and mutant brains were processed in parallel.
Isolation of B cells from spleen
The spleen from two adult
PirB wild-type and two mutant mice was dissected and B cells were isolated as described (
Sojka et al., 2005). Briefly, spleen cells were incubated with anti-Thy1.2 on ice for 40 minutes. The Thy1.2 alloantigen is expressed on all thymocytes, peripheral T lymphocytes and some intraepithelial T cells. Guinea pig complement was added for 25 minutes at 37°C to lyze Thy1.2 positive cells. The B cells were then collected by two subsequent rounds of low speed centrifugation in a discontinuous Ficoll gradient. The purity of isolated B cells was assessed by flow cytometry (FACS Diva 6.0). From spleen, 35.4 and 32.3 million cells were isolated from
PirB wild-type and mutant mice, respectively. Cells were sorted using CD3-Pe and CD4-Pe-Cy7 for T cells and B220-FITC and CD19-APC to label B-cells. The purity of B cells was 74% for
PirB+/+ and 84% for
PirB−/− spleen.
Isolation of synaptic density fractions
Preparation of synaptosomes from mouse or rat brain extracts were carried out as described previously (
Phillips et al., 2001). Briefly, mouse neocortices and hippocampi from three week old or eight week old
NgR1 wild-type and mutant mice were dissected. In a separate set of experiments hippocampi from 6–7 week old rats were used. Dissected tissue was homogenized in 0.32 M sucrose containing 0.1 mM CaCl
2, 1 mM MgCl
2, 0.1 mM PMSF, 25 mM NaF, and 1mM Na
3VO
4. Subsequently, 2 M sucrose solution containing 0.1 mM CaCl
2 was added to adjust the final concentration to 1.25 M sucrose. In an ultracentrifuge tube, the 1.25M sucrose solution containing the tissue homogenate was overlaid with a 1 M sucrose solution containing 0.1 mM CaCl
2, and with 0.32M sucrose solution containing 0.1 mM CaCl
2. Synaptosomes were collected at the 1 M/1.25 M interface of the sucrose gradient by centrifugation at 100,000 × g for 3 hours in a Sorvall UltraCentrifuge using a SW41 rotor. From the isolated synaptosomes, the extra-synaptic junction fraction was separated from the synaptic junction proteins by extraction in 1% TritonX-100 at pH 6 followed by centrifugation at 40,000 × g for 30 min. The resulting pellet comprised the synaptic junction fraction and was further separated into pre- and post-synaptic density fractions by extraction in 1% TritonX-100 at pH 8. The protein concentration of each fraction was determined using the BCA kit (Pierce, Rockford) and adjusted to the same final value. Synaptic density fractions were aliquoted and stored at −80°C. Multiple independent preparations were carried out from
NgR1 wild-type and mutant mice at age 6–7 weeks (n= 4) and 3 weeks (n= 3).
Recombinant proteins
HEK293T cells were transiently transfected using Lipofectamine2000 (Invitrogen) to express eGFP or full-length mouse PirB (Open Biosystems). Soluble fusion proteins contained either human placental alkaline phosphatase (AP) or the Fc region of human IgG1. Soluble AP-Nogo66 C-terminally tagged with 6-histidines (6his) and AP-Fc were expressed in HEK293T cells and isolated from conditioned cell culture supernatant (optiMEM, Invitrogen) by affinity chromatography using ProteinA/G beads (Pierce) or Ni
2+-NTA beads (Invitrogen) as described previously (
Venkatesh et al., 2005). Additional recombinant proteins included Nogo66-Fc and OMgp-6his (R&D Systems). The recombinant proteins were analyzed by SDS-PAGE followed by Western blotting or coomassie staining. In addition, the quality of recombinant proteins was assayed by binding to COS-7 cells transiently transfected with an expression construct for full-length mouse PirB or eGFP as described previously (
Robak et al., 2009).
Primary neuronal cultures
Rat E18 hippocampal and cortical neurons were cultured at high density on poly-L-lysine (50 µg/ml) coated 6 –well plates in NS21 growth medium (Chen et al., 2008) at 37°C in a humidified cell culture incubator. At day 9
in vitro (DIV9), cultures were treated with BDNF (100 ng/ml), crude CNS myelin (185 µg/ml (
Robak et al., 2009)), or AP-Nogo66 (5 nM) final concentration. AP-Nogo-66 in OptiMEM was added to the cultures and the same volume of OptiMEM was added to control cultures. Cells were lyzed for 20 min on ice using cooled Brij lysis buffer (BLB: 10 mM potassium phosphate pH 7.2, 1 mM EDTA, 10 mM MgCl
2, 50 mM β-glycerophosphate, 1 mM Na
3V0
4, 0.5% NP40, and 0.1% Brij-35) containing protease inhibitor cocktail (Sigma) at a 1:100 dilution. Cell lysates were cleared by centrifugation in a cooled Eppendorf centrifuge for 10 min at maximal speed and the protein concentration of supernatants was determined with the BCA kit. For Western blot analysis, 10 µg of protein lysate was loaded per lane.
Western blot analysis
Crude brain homogenates and synaptosomal density fractions were normalized to total protein (BCA kit). Synaptosomes isolated from adult rats or NgR1 wild-type and mutant mice were lyzed in 2x Laemmli buffer, separated by SDS-PAGE, and transferred onto nylon membranes. Nitrocellulose membranes were blocked with fat free milk (2% in TBS-T) and probed with antibodies specific for NgR1 (1:1000, R&D Systems), Lingo-1 (1:1000, R&D Systems), p75 (1:1000, Promega), Nogo-A/B (1:500, R&D systems), OMgp (1:1000, R&D Systems), FGFR1 (kind gift M.K. Stachowiak, University of Buffalo, NY), FRS2α (1:1000, Santa Cruz), CamKIIα (1:1000, Sigma), NR1 (1:1000, Upstate), NR2B (1:1000, Upstate), GluR1 (1:1000, Millipore), Syntaxin 1A (1:500, Assay Designs), PSD-95 (1:500, Upstate, Lake Placid, NY), synaptophysin (1:1000 Sigma), TuJ1 (1:1000, Promega), human Fc (1:1000, Chemicon), AP (1:5000, American Research Products), and actin (1;10,000 Sigma). To confirm that PirB mutant mice are null for PirB protein, lysates of spleen B cells were analyzed by Western blotting with a polyclonal goat anti-PirB antiserum (1:250, R&D Systems). Phospho-specific antibodies and the corresponding phosphoylation independent antibody were obtained from Cell Signaling and included anti-pAKT(Ser473) (1:2000) and total AKT (1:5000), anti-pErk1/2(Thr202/Tyr204) (1:2000) and total Erk (1:5000), anti-pS6K(Thr389) (1:1000) and total S6K (1:1000). To detect all of these antibodies ECL anti-rabbit, anti-goat or anti-mouse secondary IgG-HRP (from donkey, GE Healthcare) at 1:3000 was used. For Western blots with the phospho-specific antibodies, PVDF membrane (from Millipore) was blocked with 2% TBST (0.1% Tween) and the same buffer was used for antibody dilution.
Electrophysiological recordings
Recordings from acute hippocampal slices were performed as described (
Lee et al., 2008). Briefly, for LTP experiments
NgR1, PirB, or
p75 mutant and wild-type mice between 6–9 weeks of age were decapitated, the brains quickly removed, and immediately placed in ice-cold artificial cerebrospinal fluid (ACSF: 125 mM NaCl, 1.25 mM NaH
2PO
4, 25 mM glucose, 25 mM NaHCO
3, 2.5 mM CaCl
2, 1.3 mM MgCl
2, 2.5 mM KCl saturated with 95% O
2/5% CO
2). For LTD studies brains from P15–17 mice or P18–21 rat pup were used as described in detail (
Lee et al., 2008). For all recordings at CA3-CA1 synapses sagittal slices (400 µm) were cut on a vibrating microtome and maintained in oxygenated (95% O
2/5% CO
2) ACSF at room temperature for at least 1.5 hr. For recordings, the slices were transferred to a heated immersion chamber, continuously perfused at 3 ml/min with oxygenated ACSF and maintained at 32 ± 0.5°C.
Evoked potentials were recorded from the CA1 stratum radiatum region by stimulating Schaffer collateral afferents with a platinum/iridium concentric bipolar electrode (FHC Inc, Bowdoinham ME). Field excitatory post-synaptic potentials (fEPSPs) were taken with glass microelectrodes filled with ACSF (pipette resistance ~0.3–0.4 MΩ). The stimulation electrode was positioned in the Schaffer collateral projections to provide activation of the CA1 pyramidal cells. Input-output curves were established using a stimulus amplitude of 50, 100, or 150 µA. Slices were monitored with stimuli consisting of constant current pulses of 0.1 ms duration at 0.067 Hz. After baseline recording for ~45 min (~1mV amplitude), LTP was induced at ≤ 50% of maximal amplitude by high frequency stimulation (HFS) (100 Hz, 1s duration, 2 trains, interval 10s) as described previously (
Meng et al., 2003). Slices that did not show a stable baseline for at least 30 min prior to stimulation were discarded. For local application of recombinant protein to the dendritic field of CA1 neurons, OMgp, Nogo-66 or AP-Fc were diluted in ACSF to a final concentration of 0.5–1 mg/ml, loaded in the recording pipette, and applied locally as described previously (
Lee et al., 2008). For paired-pulse facilitation recordings (PPF), interpulse interval durations of 25, 50, 100, 200, 300, 400, and 500 ms were used and recordings in the presence or absence of locally applied ligand were performed as described (
Lee et al., 2008).
LTD experiments were carried out in a similar fashion on acute slices from P15–20 mouse pups except that MgCl
2 and KCl concentrations were increased to 2.0 mM and 5.0 mM, respectively (
Lee et al., 2008). To induce depression of the fEPSP a low frequency stimulus comprised of 900 pulses given at 1 Hz for a total duration of 15 min was applied. For local application of recombinant protein to the dendritic field of CA1 neurons, proteins of interest were loaded in the recording electrode as described above.
Data acquisition and analysis
Recorded potentials were filtered at 3 kHz, digitized at 12.5 kHz, and stored for later analysis. fEPSPs were analyzed by fitting 3rd order polynomials to the sweeps, first to measure the peak, and then to measure the slope at the 50% amplitude point. All fits were monitored visually on the oscilloscope screen. Data were normalized to the baseline average. Electrophysiological measurements are presented as mean percentile of baseline ± SEM. Data were analyzed statistically using Student’s t-test. Significance was determined as P< 0.05.