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J Biomol Tech. 2010 September; 21(3 Suppl): S21.
PMCID: PMC2918172

OmicsHub Proteomics Software Tool

T. Lloret,1 J. L. Carmona Tamayo,1 J. M. Sierra Cantero,1 J. M. Carazo,1,2 and E. González Couto1
1Integromics, Madrid, Spain;
2National Center for Biotechnology (CNB-CSIC), Madrid, Spain

Abstract

RP-6

OmicsHub Proteomics integrates in one single platform all the steps of a Mass Spectrometry Experiment reducing time and data management complexity. The proteomics data automation and data management/analysis provided by OmicsHub Proteomics solves the typical problems your lab members find on a daily basis and makes life easier when performing tasks such as multiple search engine support, pathways integration or custom report generation for external customers. OmicsHub has been designed as a central data management system to collect, analyze and annotate proteomics experimental data enabling users to automate tasks. OmicsHub Proteomics helps laboratories to easily meet proteomics standards such as PRIDE or FuGE and works with controlled vocabulary experiment annotation. The software enables your lab members to take a greater advantage of the Mascot and Phenyx search engines unique capabilities for protein identification. Multiple searches can be launch at once, allowing peak list data from several spots or chromatograms to be sent concurrently to Mascot/Phenyx. OmicsHub Proteomics works for both LC and Gel workflows. The system allows to store and compare proteomics data generated from different Mass Spectrometry instruments in a single platform instead of having a specific software for each of them. It is a web application which installs in a single server needing just Web Browser to have access to it. All experimental actions are userstamp and datestamp allowing the audit tracking of every action performed in OmicsHub. Some of the OmicsHub Proteomics main features are Protein identification, Biological annotation, Report customization, PRIDE standard, Pathways integration, Group proteins results removing redundancy, Peak filtering and FDR cutoff for decoy databases. OmicsHub Proteomics its flexible enough to parsers for new file formats to be easily imported and fits your budget having a very competitive price for its perpetual license.


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