PMCCPMCCPMCC

Search tips
Search criteria 

Advanced

Logo of bmcgenoBioMed Centralsearchsubmit a manuscriptregisterthis articleBMC Genomics
 
From:
Published online 2010 June 8. doi: 10.1186/1471-2164-11-363

Table 2

Description of matches with glycine-rich proteins present in the Arachnida protein database for transcripts from A. cajennense, R. sanguineus and R. microplus

Best Match to Arachnida DatabaseAccession number of Best MatchSize (amino acid)% Glycine of Best matchLibraryTranscript name (Number of ESTs)% Glycine in respective transcript*E-value of Match
cement-like antigen [H. longicornis]gi 11664250517934,63SGFAcAc147 (1)28,819E-005
SGFRsRs345 (1)21,785E-009
SGFRmRm62 (1)21,115E-009
SGFRmRm115 (2)22,911E-011
SGFRmRm 519 (1)23,373E-007
SGFRmRm61 (3)32,21E-020
cement-like antigen [H. longicornis]gi 12559702021738,7SGFRmRm265 (1)22,221E-009
SGFRmRm71 (1)41,321E-017
SGFRmRm470 (1)31,79
NPL-2 [I. pacificus]gi 510114047838,46SGFRmRm234 (1)21,351E-006
putative cement protein [I. scapularis]gi 5036317411950,42SGFRmRm388 (1)20,435E-007
putative cement protein RIM36 [R. appendiculatus]gi 2188526233424,55SGFAcAc52 (2)20,578E-024
SGFRmRm77 (1)25,822E-009
salivary gland-associated protein 64P [R. appendiculatus]gi 2006901215429,22SGFAcAc109 (1)204E-012
SGFRsRs12 (13)30,431E-025
Unknown [R.haemaphysaloides]gi 4547921350625,29SGFAcAc9 (10)24,82E-028
SGFRsRs17 (5)22,051E-149
SGFRsRs19 (1)20,317E-062
SGFRsRs20 (1)21,13E-082
SGFRsRs156 (1)30,371E-020
SGFRsRs402 (1)25,772E-028
SGFRsRs428 (1)30,722E-028
SGFRmRm29 (11)36,943E-060
SGFRmRm70 (2)31,192E-024
SGFRmRm30 (1)30,512E-020
SGFRmRm31 (1)26,083E-022
SGFRmRm67 (3)20,383E-074
SGFRmRm85 (2)11,343E-025
SGFRmRm479 (1)23,764E-010
acanthoscurrin 1 precursor [A. gomesiana]gi 2752441715662,17SGFAcAc354 (1)42,853E-014
SGFRsRs26 (6)31,952E-019
flagelliform silk protein [A. trifasciata]gi 135619821.00256,78SGFAcAc233 (1)30,473E-005
SGFRmRm259 (1)22,221E-005
flagelliform silk protein [A. trifasciata]gi 1356198065147,31SGFRmRm533 (1)30,911E-017
flagelliform silk protein [N.clavipes]gi 283364787146,84SGFRsRs54 (3)33,149E-020
SGFRmRm35 (1)20,682E-011
SGFRmRm36 (1)22,538E-010
SGFRmRm32 (3)254E-018
flagelliform silk protein [N.clavipes]gi 71062242.24954,37SGFRsRs130 (1)21,424E-004
SGFRmRm34 (3)25,547E-012
SGFRmRm129 (2)26,825E-012
flagelliform silk protein [N. madagascariensis]gi 71062281.88451,8SGFRmRm33 (2)27,483E-021
SGFRmRm37 (1)21,647E-011
flagelliform silk protein [N. madagascariensis]gi 710622962647,12SGFRmRm76 (2)17,227E-008
SGFRmRm197 (1)252E-004
fibroin 2 [D. spinosa]gi 8911399062335,63SGFRsRs29 (5)23,926E-011
SGFRmRm433 (1)23,81E-005
major ampullate spidroin 1 [L. hesperus]gi 892768171.06541,22SGFRmRm324 (1)48,381E-019
major ampullate dragline silk protein-2 [Araneus ventricosus]gi 2722895942927,03SGFAcAc13 (3)32,463E-009
major ampullate spidroin 2-1 [K. hibernalis]gi 4700793818547,02SGFAcAc15 (1)35,922E-013
SGFRmRm381 (1)22,977E-017
SGFRmRm418 (1)219E-008
major ampullate spidroin 2-2 [K. hibernalis]gi 4700795221449,53SGFAcAc14 (1)32,333E-025
Ac17 (1)32,092E-010
Ac16 (1)31,961E-014
SGFRsRs38 (1)17,351E-010
SGFRsRs37 (3)31,096E-018
SGFRsRs70 (2)31,651E-022
spidroin 1 [N. clavipes]gi 291127454440,25SGFRsRs84 (2)45,232E-004
SPD1_NEPCL Spidroin-1 [Dragline silk fibroin 1]gi 117441474742,3SGFRmRm185 (1)26,254E-005

* Computation of glycine content was calculated based on translated consensus sequence