(A) Contribution of the physical network can be assessed by comparing performance of JointCluster in this figure with that in Figure 3 B, and (B) Effect of decomposing the combined glucose+ethanol network into separate glucose and ethanol coexpression networks, or the physical network into protein-protein and protein-DNA networks, or both on the clusters detected by JointCluster on the physical and coexpression networks. The figure format is same as in Figure 3, and “prot.” refers to protein.