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J Cell Biol. 2010 April 5; 189(1): 83–94.
PMCID: PMC2854380

AMP kinase–mediated activation of the BH3-only protein Bim couples energy depletion to stress-induced apoptosis


Excitotoxicity after glutamate receptor overactivation induces disturbances in cellular ion gradients, resulting in necrosis or apoptosis. Excitotoxic necrosis is triggered by rapid, irreversible ATP depletion, whereas the ability to recover cellular bioenergetics is suggested to be necessary for the activation of excitotoxic apoptosis. In this study, we demonstrate that even a transient decrease in cellular bioenergetics and an associated activation of adenosine monophosphate–activated protein kinase (AMPK) is necessary for the activation of excitotoxic apoptosis. We show that the Bcl-2 homology domain 3 (BH3)–only protein Bim, a proapoptotic Bcl-2 family member, is activated in multiple excitotoxicity paradigms, mediates excitotoxic apoptosis, and inhibits delayed Ca2+ deregulation, mitochondrial depolarization, and apoptosis-inducing factor translocation. We demonstrate that bim activation required the activation of AMPK and that prolonged AMPK activation is sufficient to induce bim gene expression and to trigger a bim-dependent cell death. Collectively, our data demonstrate that AMPK activation and the BH3-only protein Bim couple transient energy depletion to stress-induced neuronal apoptosis.


The overexcitation of glutamate receptors, in particular N-methyl-d-aspartic acid (NMDA) receptors, has been implicated in the neuronal injury associated with ischemic stroke, head trauma, hypoglycemia, and prolonged seizures (Choi and Rothman, 1990) and may play an important role in chronic neurodegenerative disorders such as amyotrophic lateral sclerosis (Rothstein et al., 1990) and Parkinson’s disease (Turski et al., 1991). Depending on intensity, duration, and intrinsic factors, an exposure of neurons to glutamate or NMDA can cause a rapid, necrotic death or a more delayed apoptotic injury characterized by cell shrinkage and nuclear condensation (Ankarcrona et al., 1995; Lankiewicz et al., 2000; Ward et al., 2006).

Glutamate receptor overactivation leads to a massive disturbance of cellular ion homeostasis resulting from the primary or secondary influx of Na+, Ca2+, H+, and Cl into the cytoplasm (Choi, 1987). Neurons attempt to restore their cellular ion homeostasis via the activity of ATP-consuming ion pumps, including Ca2+ ATPases and the plasma membrane Na+K+ATPase, the driving force for Na+-Ca2+ and Na+-H+ exchangers (Brines and Robbins, 1992; Mironov, 1995). Importantly, the extent of ATP depletion and recovery of cellular bioenergetics critically determines the type of cell death that occurs (Ankarcrona et al., 1995; Bonfoco et al., 1995; Luetjens et al., 2000; Ward et al., 2000). If the extent of ionic disturbances exceeds the capacity of the ATP-dependent ion pumps to restore ionic gradients, rapid cell swelling and necrosis occurs (Ankarcrona et al., 1995; Bonfoco et al., 1995; Ward et al., 2000, 2007). Conversely, if the ATP demand is less severe and the capacity of cells to generate ATP is sufficient, neurons restore their ionic gradients, and only a transient decrease in mitochondrial membrane potential (Δψm) or cellular ATP levels can be detected. Nevertheless, many of these neurons proceed to undergo apoptotic death over the following hours (Ankarcrona et al., 1995; Bonfoco et al., 1995; Luetjens et al., 2000; Ward et al., 2007).

What remains largely unresolved is the question of how excitotoxicity triggers apoptosis despite the apparent recovery of ATP levels and ionic gradients. Clearly, several pathways may be activated by the influx of Ca2+, which triggers nonnecrotic cell death, including the activation of nitric oxide synthase, PARP (poly[ADP-ribose] polymerase), or calpains (Dawson et al., 1991; Mandir et al., 2000). In contrast, provision of energy substrates such as glucose or pyruvate potently inhibits excitotoxic cell death (Ruiz et al., 1998; Vergun et al., 2003; Weisová et al., 2009). Evidently, energy stress induced by excitotoxins may cooperate with other cell death pathways or may even be the key stress signal for the activation of excitotoxic apoptosis. In this context, we recently demonstrated that the ability of cells to recover their bioenergetics critically determined the levels of excitotoxic apoptosis and defined a role for increased glucose uptake in this process (Ward et al., 2007; Weisová et al., 2009).

Apoptotic signaling pathways require the activation of the proapoptotic Bcl-2 family members Bax or Bak (Wei et al., 2001), resulting in the permeabilization of the outer mitochondrial membrane and the release of the intermembrane proteins, including cytochrome c and apoptosis-inducing factor (AIF). The transcriptional induction and/or the posttranslational activation of Bcl-2 homology domain 3 (BH3)–only proteins is believed to be essential for Bax/Bak activation and downstream signaling events. Previous studies have demonstrated that apoptotic excitotoxic injury is inhibited by loss of Bax or Bcl-2 overexpression (Xiang et al., 1998; Wang et al., 2004; Dietz et al., 2007; Semenova et al., 2007). In this study, we demonstrate that, in contrast to currently held views, ATP depletion and energy stress signaling are not only responsible for the activation of necrotic but also for the activation of apoptotic excitotoxic injury and that this occurs via the activation of an AMP-activated protein kinase (AMPK), culminating in the activation of the BH3-only protein Bim.


Excitotoxic apoptosis activates the BH3-only protein Bim

Glutamate receptor overactivation induces a necrotic or apoptotic cell death, depending on the duration of receptor stimulation and magnitude of intracellular Ca2+ and Na+ loading (Ankarcrona et al., 1995). Stimulation of glutamate receptors in cerebellar granular neurons (CGNs) with 100 µM glutamate/10 µM Gly for 10 min resulted in a delayed excitotoxic apoptosis within a 4–24-h time frame, which was characterized by cell shrinkage and nuclear pyknosis (Fig. 1, A–C; Ward et al., 2006; Weisová et al., 2009). Glutamate excitation resulted in an initial increase in intracellular Ca2+ that quickly returned to baseline levels; however, cells undergoing excitotoxic apoptosis displayed a delayed Ca2+ deregulation (DCD) within 10–18 h of stimulation (Fig. 1 D). Analysis of Δψm using tetramethyl rhodamine methyl ester (TMRM) and ATP levels revealed a membrane potential depolarization during glutamate exposure that was coupled to a reduction in cellular ATP levels. Both processes were transient in nature, with TMRM fluorescence and ATP levels recovering within 1–2 h (Fig. 1, E and F). Collectively, these data suggested that glutamate receptor activation induced a transient depletion of energy levels that was followed by a delayed apoptotic response in the majority of neurons. To investigate potential mediators of this event, we used real-time quantitative PCR (qPCR) to investigate the expression levels of BH3-only proteins that have been shown to be central in coupling stress signaling to apoptotic pathways (Youle and Strasser, 2008). The mRNA expression of bim was significantly increased in the time frame after glutamate receptor activation, before the major increase in cell death (Fig. 1, G and H). In contrast, the expression levels of the other major BH3-only proteins, including bid, puma, and bmf, were not significantly altered (Fig. 1 G), suggesting that Bim may be specifically activated in response to glutamate receptor activation.

Figure 1.
NMDA receptor overactivation results in a transient depletion of ATP and delayed apoptosis associated with induction of the BH3-only protein Bim. (A) Model of transient NMDA receptor activation. CGNs were treated with 100 µM glutamate/10 µM ...

Bim mediates excitotoxic apoptosis

Using siRNA to inhibit the expression of bim, we assessed the ability of CGNs to undergo cell death after glutamate excitation. As demonstrated in Fig. 1 I, bim siRNA significantly reduced the expression of Bim protein, as assessed by Western blotting. Importantly, the decreased expression of Bim within these neurons significantly reduced the number of neurons undergoing glutamate-induced apoptosis (Fig. 1 I).

To exclude potential off-target effects of bim siRNA in the protection against excitotoxic apoptosis, we availed of a panel of gene-targeted mice deficient for various BH3-only proteins (Bouillet et al., 1999; Villunger et al., 2003; Kaufmann et al., 2007). Neocortical neurons were exposed to 100 µM NMDA for 5 min, as NMDA receptors predominantly mediate glutamate excitotoxicity in cortical neurons (Choi et al., 1987). Pyknotic nuclei were detected in the majority of neurons 24 h after excitation (Fig. 2 A), and quantification revealed a time-dependent increase in the number of pyknotic nuclei at 16 and 24 h after NMDA excitation (Fig. S1). Indeed, parallel assessment of apoptosis by propidium iodide (PI) staining revealed that the number of PI-positive cells after transient NMDA receptor activation closely paralleled apoptotic levels, as assessed by the quantification of pyknotic nuclei (Fig. S1). Analysis of the expression of the BH3-only proteins Bim, Bid, and PUMA revealed an early and sustained increase in the expression of Bim, whereas the expression of PUMA or Bid remained unchanged (Fig. 2 B). No evidence for increased cleavage of Bid into its more potent truncated form, tBid, was observed (Fig. 2 B). We next quantified the levels of pyknotic nuclei after NMDA excitation in neurons from puma-, bid-, or bim-deficient mice. Loss of either bid or puma expression afforded no protection after NMDA treatment (Fig. 2, D and E); however, bim−/− neurons provided significant protection (Fig. 2 C). We also investigated the role of Bim during excitotoxic injury in the more complex environment of mouse organotypic hippocampal slice cultures (OHSCs). Treatment with 50 µM NMDA for 30 min resulted in cell death at the CA1 region, as assessed by PI uptake after 24 h (Fig. 2 F). This injury was accompanied by a significant induction of bim mRNA and Bim protein expression (Fig. S2), with loss of Bim expression affording significant protection from NMDA-induced excitotoxic injury (Fig. 2, F and G).

Figure 2.
Proapoptotic BH3-only protein Bim is essential for NMDA-mediated excitotoxic apoptosis. (A) Neocortical neurons were exposed to 100 µM NMDA/10 µM Gly or sham conditions for 5 min and allowed to recover for 24 h. Nuclear morphology was ...

bim is required for DCD and AIF translocation during excitotoxic apoptosis

The aforementioned experiments suggested that Bim plays a key role in mediating apoptosis in multiple models of excitotoxic injury. Previous studies have indicated important roles for DCD, delayed Δψm depolarization, and mitochondrial outer membrane permeabilization in excitotoxic apoptosis (Ankarcrona et al., 1995; Budd et al., 2000; Luetjens et al., 2000; Ward et al., 2000, 2006; Wang et al., 2004; Cheung et al., 2005). We next investigated whether the loss of Bim expression modulated these events. Real-time imaging experiments demonstrated that the acute Ca2+ responses during NMDA exposure were comparable between wild-type (WT) and bim−/− neurons (Fig. 3, A–C). However, analysis of DCD revealed that bim-deficient neurons maintained their Ca2+ homeostasis for longer periods and underwent DCD at a much lower frequency than their WT counterparts (Fig. 3 D). Furthermore, bim−/− neurons maintained their Δψm considerably longer than their WT littermates after NMDA receptor activation (Fig. 3 E). Indeed the frequency of delayed Δψm depolarization was dramatically reduced in bim-deficient mice (Fig. 3 F). Cultures from bim-deficient mice also showed a significant reduction in the number of neurons that displayed nuclear localization of the mitochondrial protein AIF after NMDA excitation (Fig. 3, G and H).

Figure 3.
Bim is required for DCD, mitochondrial depolarization, and AIF translocation during excitotoxic apoptosis. Cortical neurons cultured on Wilco dishes were loaded with Fluo-4 AM and TMRM for 30 min at 37°C before being mounted on a thermostatic ...

Prolonged activation of AMPK is sufficient for increased Bim expression

Given that glucose or energy substrate supplementation inhibits excitotoxic injury (Vergun et al., 2003; Weisová et al., 2009), we tested the hypothesis that transient energy depletion in response to glutamate or NMDA mediates the activation of excitotoxic apoptosis. Similar to CGNs exposed to glutamate (Fig. 1 F), ATP levels were transiently decreased in neocortical neurons exposed to NMDA (Fig. 4 A). High performance liquid chromatography (HPLC) analysis demonstrated that the decline in cellular ATP was accompanied by an accumulation of AMP (Fig. 4 B). In both excitotoxicity models, these bioenergetic alterations correlated with increased phosphorylation of AMPK at Thr172, which is indicative of AMPK activation (Fig. 4, C and D). To assess whether AMPK activation was sufficient to mediate neuronal apoptosis, we directly activated AMPK activity using 5-aminoimidazole-4-carboxamide riboside (AICAR), which is an AMP mimetic. The addition of AICAR to cultures of neocortical neurons resulted in increased phosphorylation of AMPK, correlating with a robust induction of Bim expression that was evident within 8–24 h after AICAR addition (Fig. 4 E). A similar profile for AMPK activation and Bim expression was observed in CGNs treated with AICAR (Fig. S3 A). To investigate whether AMPK could modulate bim mRNA levels, we used luciferase reporter assays with a 0.8-kB fragment of the bim promoter (Sunters et al., 2003). Moreover, we examined whether overexpression of a constitutively active AMPK-α1 (CA-AMPK), rendered insensitive to phosphatase inactivation (Woods et al., 2000), could modulate bim promoter activity. Indeed, the expression of the CA-AMPK was associated with a significant increase in bim promoter activity (Fig. 4 F), indicating that AMPK can up-regulate bim mRNA levels. We next asked whether prolonged AMPK activation was sufficient to induce apoptosis in neurons, as reported in other cell types (Meisse et al., 2002; Kefas et al., 2003), and whether this was Bim dependent. Neocortical neurons from WT and bim−/− mice were cotransfected with vectors expressing CA-AMPK and GFP and analyzed for nuclear apoptosis after 24 h. Expression of CA-AMPK induced cell death within WT neocortical neurons, but neurons from bim−/− mice were highly resistant (Fig. 4 G). Likewise, CA-AMPK induced significant apoptosis in CGNs, and cotransfection with bim siRNA afforded protection compared with control siRNA (Fig. S3 B). Collectively, our data suggest that AMPK is activated during excitotoxic apoptosis and that prolonged activation is sufficient for increased bim mRNA expression and to trigger a Bim-dependent cell death.

Figure 4.
AMPK is activated during excitotoxic apoptosis and is sufficient to induce bim expression. (A) Neocortical neurons were treated with 100 µM NMDA/10 µM Gly or sham conditions for 5 min and allowed to recover for the indicated time periods. ...

AMPK mediates excitotoxic apoptosis in a Bim-dependent manner

We noted that activation of AMPK with AICAR induced a significant activation of JNK (Fig. 5 A), which has previously been linked to excitotoxic apoptosis (Borsello et al., 2003; Chen et al., 2003), a finding reiterated in our excitotoxicity models (Fig. S4). Therefore, we addressed whether AMPK contributed to JNK activation during excitotoxic apoptosis. Using an siRNA construct targeting AMPK-α1/α2 (Weisová et al., 2009), we down-regulated the expression of AMPK at the protein level (Fig. 5 B). Immunofluorescence analysis demonstrated increased nuclear accumulation of phosphorylated Ser63 c-Jun in control siRNA–transfected neurons after NMDA treatment (Fig. 5, C and D). In contrast, neurons expressing the AMPK siRNA had significantly reduced nuclear accumulation of phospho c-Jun. Furthermore, AMPK siRNA substantially inhibited excitotoxic apoptosis induced by NMDA (Fig. 5 E), and this was accompanied by reduced Bim induction after NMDA treatment (Fig. 5 F). Similarly, treatment with the pharmacological AMPK inhibitor compound C afforded protection against excitotoxic apoptosis in neocortical neurons (Fig. S5). Finally, to confirm that AMPK triggers NMDA-mediated excitotoxicity through Bim, we assessed the impact of ampk knockdown on NMDA-induced apoptosis in bim−/− neurons. As with our previous experiments (Fig. 5 E), loss of Bim or knockdown of ampk significantly attenuated cell death within this paradigm (Fig. 5 G). However, the knockdown of ampk expression in bim−/− neurons had no additive effect (Fig. 5 G) when compared with the control siRNA–transfected bim−/− neurons, suggesting that AMPK mediates excitotoxic apoptosis in a Bim-dependent manner.

Figure 5.
AMPK mediates excitotoxic apoptosis in a Bim-dependent manner. (A) Neocortical neurons were treated with 2.5 mM AICAR for the indicated time periods. Levels of p-JNK were assessed by Western blotting. Probing for total JNK served as a loading control. ...


A decrease in cellular bioenergetics as a consequence of ion homeostasis disruption has been previously almost exclusively linked to necrotic cell death (Ankarcrona et al., 1995; Bonfoco et al., 1995; Ward et al., 2000, 2007). This study now provides evidence that cellular ATP depletion is also required for the activation of proapoptotic signaling pathways during excitotoxic injury. We identified the proapoptotic BH3-only protein Bim as essential for the initiation of cell death within this paradigm. We also demonstrate that the energy sensor AMPK coupled energy depletion to bim mRNA induction and the subsequent activation of apoptosis in neurons.

Several studies have demonstrated that glutamate and NMDA receptor overactivation induce a rapid dysregulation of cellular ion homeostasis and an associated decrease in ATP levels, as neurons attempt to restore their ion homeostasis (Budd et al., 2000; Luetjens et al., 2000; Ward et al., 2000). AMPK is a Ser/Thr kinase that plays a fundamental role in the regulation of energy homeostasis, acting as an energy sensor to stresses that result in the depletion of ATP and increases in AMP. Increases in AMP levels such as those seen after NMDA treatment result in the allosteric activation of AMPK (Suter et al., 2006). However, several upstream kinases have been implicated in the phosphorylation and activation of AMPK, including the tumor suppressor LKB1 (Hawley et al., 2003) and Ca2+/calmodulin-dependent kinase kinase β (CaMKK-β; Hawley et al., 2005), which is activated via increases in intracellular Ca2+. Given the central role of Ca2+ in mediating excitotoxic injury (Tymianski et al., 1993) and that CaMKK-β is activated by increases in intracellular Ca2+, it is interesting to speculate that CaMKK-β may play a functional role in the activation of AMPK during excitotoxicity.

AMPK has been implicated in the stimulation of catabolism, inhibition of fatty acid and cholesterol synthesis, and autophagy during energetic stress (Meley et al., 2006; Ronnett et al., 2009), all serving as attempts to provide energy substrates and enhance cellular ATP generation. Activation of glucose transporters is one of the key activities of AMPK in providing energy substrates to ATP-deprived cells (Hardie et al., 2006). As neurons rely significantly on glucose as their energy source, up-regulation of glucose transporters may represent a central step in AMPK action in neurons. Indeed, we previously demonstrated that glutamate excitation was associated with an AMPK-dependent increase in GLUT3 translocation and uptake of glucose into neurons (Weisová et al., 2009).

In this study, we provide evidence that activation of AMPK is also required to induce excitotoxic apoptosis and show that prolonged AMPK activation can be sufficient to trigger neuronal apoptosis. Multiple studies have demonstrated that prolonged AMPK activation with AICAR can be toxic to nonneuronal cells (Meisse et al., 2002; Kefas et al., 2003). Therefore, AMPK can be added to the growing list of kinases and transcription factors that have dual functions in the regulation of cell survival or cell death depending on the type of stress and type of cell, as reported for JNK, Foxo3a, and NF-κB (nuclear factor κB; O’Neill and Kaltschmidt, 1997; Biswas et al., 2007; Mojsilovic-Petrovic et al., 2009). A key task for future studies will be to elucidate the mechanisms of cell fate switches by these signaling molecules. Signal intensity and subcellular location as well as transient (or oscillatory) versus persistent activation kinetics may critically determine cell fate. In this context, a transient activation of AMPK in neurons before glucose deprivation has been shown to be neuroprotective (Culmsee et al., 2001; Weisová et al., 2009), whereas inhibition of AMPK activity with compound C administered at the onset of cerebral ischemia or genetic deletion of AMPK-α2 provided significant protection after middle cerebral artery occlusion in vivo (McCullough et al., 2005; Li et al., 2007). AMPK has been shown to influence several long-term processes and cell fate decisions in addition to the acute regulation of cellular bioenergetics such as cell cycle arrest and cell polarity (Gwinn et al., 2008). In this study, we demonstrate that prolonged AMPK activation is also directly associated with the transcriptional induction of the BH3-only protein Bim and activation of the Bcl-2–regulated apoptotic pathway.

Several different factors have been implicated in the regulation of the bim gene in neurons, including JNK/c-Jun (Harris and Johnson, 2001; Whitfield et al., 2001), Foxo3a (Sunters et al., 2003; Biswas et al., 2007), and C-myb (Biswas et al., 2007). Previous studies have demonstrated the activation of JNK during excitotoxic injury and the neuroprotection achieved by JNK inhibition in these scenarios (Borsello et al., 2003; Chen et al., 2003; Centeno et al., 2007). Indeed, AMPK activation has also been linked to subsequent downstream JNK activity during apoptosis (Meisse et al., 2002; Kefas et al., 2003; Lee et al., 2008). However, it should be noted that the regulation of bim expression is highly complex (Biswas et al., 2007), and other pathways independent of JNK signaling may well be required for Bim-dependent excitotoxic apoptosis. A recent study has shown that AMPK can phosphorylate and enhance the transcriptional activity of Foxo3a (Greer et al., 2007). In addition, given that AMPK can down-regulate mTOR (mammalian target of rapamycin) signaling, this may in turn result in decreased Akt phosphorylation, nuclear translocation of Foxo3a, and induction of bim. Although we could demonstrate a role for AMPK in the regulation of Bim induction, it remains plausible that NMDA-mediated excitotoxic injury may also have an impact on JNK, Foxo3a, or other cellular signaling pathways independent of AMPK activity to regulate Bim expression. Indeed, it remains plausible that the activation of AMPK by itself may not be sufficient for Bim induction in certain cell types and/or settings, and the AMPK-mediated regulation of Bim expression may be dependent on the manner of AMPK activation.

Our data also suggest that bim expression is central to DCD and the late collapse of the Δψm, which are cellular events not previously linked to gene induction after an excitotoxic stimulus. Indeed, the time frame of bim mRNA induction preceded the delayed Δψm depolarization and DCD, with the frequency of both of these events diminished in bim-deficient neurons. We and others provided evidence for the mitochondrial release of cytochrome c and AIF during excitotoxic apoptosis (Luetjens et al., 2000; Wang et al., 2004). Cytochrome c release in mature neurons may not be sufficient to cause a large extent of executioner caspase activity caused by increased XIAP (X-linked inhibitor of apoptosis protein) levels, reduced expression of APAF-1, and calpain-mediated degradation of caspases (Lankiewicz et al., 2000; Yakovlev et al., 2001; Potts et al., 2003). AIF plays a central role in caspase-independent excitotoxic apoptosis, where it substitutes for caspases to induce nuclear condensation (Wang et al., 2004; Cheung et al., 2005).

In this study, we demonstrate a requirement for Bim in excitotoxic apoptosis. This form of cell death contrasts with excitotoxic necrosis, in which Δψm does not recover and cell lysis occurs in the absence of nuclear condensation (Ankarcrona et al., 1995; Ward et al., 2006). Nevertheless, we cannot exclude that other pathways were activated that mediate alternative or intermediate cell death types or work in parallel to Bim-dependent apoptosis. These might include the Ca2+-mediated opening of the mitochondrial permeability transition pore (PTP; Baines et al., 2005), the activation of calpains (Bano et al., 2005), and the activation of PARP-1 (Mandir et al., 2000). Of particular note, the activation of PARP-1 during excitotoxicity results in the depletion of intracellular pools of NAD+, which the enzyme uses as a substrate (Liu et al., 2008). This in turn results in a depletion of ATP levels as NAD+ synthetase is activated to synthesize NAD+ and a reduced concentration of NAD+ is available for reduction to the high energy substrate NADH. This may create a positive feed-forward signal for AMPK activation and consequent bim induction. Indeed NAD+ supplementation has been shown to protect neurons from excitotoxic injury (Liu et al., 2008). Similarly, PTP opening depletes mitochondrial ATP production, and the activation of calpains can further increase neuronal Ca2+ overloading (Bano et al., 2005), thereby increasing the ATP demand. However, as PARP-1 activation, PTP opening, and calpain activation also occur physiologically, it is reasonable to assume that AMPK-dependent bim gene activation represents a key gateway for the activation of excitotoxic apoptosis.

In conclusion, we demonstrate that depletion of cellular ATP is a key signaling switch in the activation of proapoptotic signaling pathways during excitotoxic injury. This process requires AMPK and the activation of the proapoptotic BH3-only protein Bim. These findings have the potential to be translated to numerous pathophysiological settings in which moderate to severe energy depletion may lead to the execution of apoptosis.

Materials and methods

Preparation of rat CGNs and mouse neocortical neurons

Mouse neocortex or rat (Sprague-Dawley) cerebellum was isolated from embryonic day 16 or postnatal day 7 pups, respectively. The isolated tissue was then transferred to dissection medium on ice (PBS with 0.25% glucose and 0.3% BSA). The tissue was incubated with 0.25% trypsin-EDTA at 37°C for 15 min. After the incubation, the trypsinization was stopped by the addition of medium containing sera. The neurons were then dissociated by gentle pipetting, and after centrifugation (1,500 rpm for 3 min) the medium containing trypsin was aspirated. Neocortical neurons were resuspended in fresh plating medium (MEM containing 5% fetal calf serum, 5% horse serum, 100 U/ml penicillin/streptomycin, 0.5 mM l-Gln, and 0.6% d-glucose), whereas CGNs were resuspended in MEM containing 10% fetal calf serum, 100 U/ml penicillin/streptomycin, 0.5 mM l-Gln, 4 mM KCl, and 0.6% d-glucose. Cells were plated at 2 × 105 cells/cm2 on poly-Lys–coated plates and incubated at 37°C, 5% CO2. The plating medium was exchanged for feeding medium the following day. Neurobasal medium–embryonic containing 100 U/ml penicillin/streptomycin, 2% B27, and 0.5 mM l-Gln and 600 nM cytosine arabinofuranoside for neocortical neurons and 1:1 plating medium/feeding medium (plating medium minus l-Gln) and 10 µM cytosine arabinofuranoside for CGNs. One third of the medium was exchanged for fresh medium every 2–3 d until day in vitro (DIV) 6. Experiments were performed until DIV 9.


OHSCs were prepared and cultured according to the modified procedure (Kristensen et al., 2001). The brain from postnatal day 10 mouse pups was isolated and transferred to dissection medium containing HBSS (Invitrogen), 20 mM Hepes, 100 U/ml penicillin, 100 µg/ml streptomycin, and 0.65% glucose. Isolated hippocampi were placed on a McIlwain tissue chopper (Mickle Laboratory Engineering) and cut into 450-µm-thick sections. The slices were then transferred onto the porous (0.4 µm) membrane of millicell inserts (Millipore). The inserts were placed in 24-well tissue culture plates with 250 µl of culture medium consisting of MEM (Sigma-Aldrich) supplemented with 25% horse serum, 4 mM l-Gln, 6 mg/ml d-glucose, 2% B27, 50 U/ml penicillin G, and 50 µg/ml streptomycin (Sigma-Aldrich). The slices were maintained in a humidified incubator with 5% CO2 at 35°C with media changes every other day. All experiments were performed at DIV 10.

Confocal microscopy

Primary neocortical neurons or CGNs were loaded with 3 µM Fluo-4 AM and 20 nM TMRM in experimental buffer (120 mM NaCl, 3.5 mM KCl, 0.4 mM KH2PO4, 20 mM Hepes, 5 mM NaHCO3, 1.2 mM Na2SO4, 1.2 mM CaCl2, 1.2 mM MgCl2, and 15 mM glucose, pH 7.4) for 30 min at 37°C. The buffer was then exchanged for buffer without Fluo-4 AM and placed on the stage of a confocal microscope (LSM 510 Meta; Carl Zeiss, Inc.) with a 63× NA 1.4 differential interference contrast objective with a thermostatically regulated chamber maintained at 37°C. 10 µM MK-801 was added to block open channel NMDA receptors after receptor stimulation. Fluo-4 AM was excited at 488 nm with the emission collected by a 505–550-nm filter, TMRM was excited at 543 nm, and the emission was collected with by a 560-nm-long pass filter. Images were captured at 15-s intervals during excitation and every 5 min for the rest of the experiment. The resulting images were processed and analyzed using MetaMorph software (7.0r1-4; MDS Analytical Technologies).

Real-time qPCR

Total RNA was extracted using the RNeasy mini kit (QIAGEN). First strand cDNA synthesis was performed using 2 µg of total RNA as template and reverse transcribed using Superscript II (Invitrogen) primed with 50 pmol of random hexamers. Real-time qPCR was performed using the LightCycler 2.0 (Roche) and the QuantiTech SYBR green PCR kit (QIAGEN). Sense and antisense primers were as follows: 5′-CCAGCTGACTGCCCTGTCTA-3′ and 5′-AGCAACTTCACCTGCTGTGC-3′ for bim; 5′-ACGACAAGGCCATGCTGATA-3′ and 5′-AGGCACCCTCAGTCCATCTC-3′ for bid; 5′-GAGACGCTGTCCTGGAGTCA-3′ and 5′-GGCCTTGTCTTCCTGGCTTA-3′ for bmf; 5′-ATGGACTCAGCATCGGAAGG-3′ and 5′-TGGCTCATTTGCTCTTCACG-3′ for puma; and 5′-AGCCATCCAGGCTGTGTTGT-3′ and 5′-CAGCTGTGGTGGTGAAGCTG-3′ for actin. The data were analyzed using the LightCycler software 4.0 (Roche) with all samples normalized to β-actin.

Western blotting

Preparation of cell lysates and Western blotting were performed as described previously (Weisová et al., 2009). Blots were probed with either rabbit polyclonal antibodies to Bim (StressGen) diluted 1:1,000, phospho (Thr172) AMPK antibody (Cell Signaling Technology) diluted 1:1,000, total AMPK (Cell Signaling Technology) diluted 1:1,000, phospho (Thr183/Thr185) JNK (Cell Signaling Technology) diluted 1:1,000, total JNK (Cell Signaling Technology) diluted 1:1,000, PUMA-NT (ProSci) diluted 1:500, an anti–goat Bid antibody (R&D Systems) diluted 1:1,000, or a mouse monoclonal anti–β-actin antibody (clone DM 1A; Sigma-Aldrich), diluted 1:5,000. Horseradish peroxidase–conjugated secondary antibodies diluted 1:10,000 (Thermo Fisher Scientific) were detected using SuperSignal West Pico Chemiluminescent Substrate (Thermo Fisher Scientific) and imaged using an imaging system (LAS-3000; Fujifilm).

Determination of neuronal injury: Hoechst and PI staining of nuclear chromatin

Neocortical neurons and CGNs were stained live with 1 µg/ml Hoechst 33258 in medium. Nuclear morphology was assessed using an inverted microscope (Eclipse TE 300; Nikon) with a 20× NA 0.43 phase contrast objective using the appropriate filter set for Hoechst and a charge-coupled device camera (SPOT RT SE 6; Diagnostic Instruments, Inc.) and Wasabi software (Hamamatsu Photonics). For each time point, images of apoptotic morphology were captured in three subfields and repeated in triplicate. Resultant images were processed using ImageJ (Micron-Optica; National Institutes of Health). Condensed nuclei were scored as pyknotic nuclei and expressed as a percentage of the total population. For the determination of neuronal injury in OHSCs, slices were stained live with 5 µg/ml PI for 15 min before image acquisition. Images were captured before and after treatment using the TE 300 microscope with a 4× NA 0.13 phase objective and captured using a SPOT RT SE 6 charge-coupled device and Wasabi software and the appropriate filter set for PI. Illumination and exposure (camera gain and exposure time) were kept constant throughout each series of recordings and between experiments. Images were processed using ImageJ. A suitable region of interest was selected, and increase in mean fluorescent intensity was determined. Background intensity was accounted for, and neuronal injury was expressed as a percentage of total injury (1 mM NMDA for 1 h and sham conditions with 10 µM MK-801 was used to assess the fluorescent dynamic range). All experiments were performed at least three times with independent cultures.

Plasmids, transfections, and siRNA

The plasmid encoding the CA-AMPK (Woods et al., 2000) was a gift from D. Carling (Imperial College London, London, England, UK). Neocortical neurons were transfected at DIV 5 using Lipofectamine 2000 (Invitrogen). CGNs were transfected using Ca2+ phosphate as previously described (Weisová et al., 2009). For inhibition of AMPK, cells were transfected with a vector expressing either an siRNA targeting AMPK-α1/α2 or a control sequence as previously described (Weisová et al., 2009). Silencing of Bim expression was performed using siRNA duplexes purchased from Sigma-Aldrich. Sequences were as follows: Bim sense, 5′-CGGGACAGCAGAGAAGAUC(dTdT)-3′; Bim antisense, 5′-GAUCUUCUCUGCUGUCCCG(dTdT)-3′; control sense, 5′-ACUUAACCGGCAUACCGGC(dTdT)-3′; and control antisense, 5′-GCCGGUAUGCCGGUUAAGU(dTdT)-3′.

Luciferase assays

CGNs were transfected with a reporter construct containing 0.8 kB of the Bim promoter construct (gift from E. Lam, Imperial College London; Sunters et al., 2003) using the transfection agent Neurofect (Genlantis) in neurobasal medium supplemented with 10% B27, 25 mM KCl, and 2 mM Gln. For luciferase assays, neurons were lysed in passive lysis buffer, and luciferase activity was analyzed using a luminometer and dual luciferase assay kit (Promega) according to the manufacturer’s instructions. Transfections were performed in triplicate dishes, and luciferase counts (relative luminescence units) were normalized using TK-Renilla luciferase cotransfection.

ATP assay

After appropriate treatments, neurons were lysed using a hypotonic lysis buffer (Tris-acetate buffer, pH 7.75). ATP measurements were performed using the ENLITEN ATP Assay System Bioluminescence Detection kit (Promega) according to the manufacturer’s instructions, and the resultant luminescence was monitored using a luminometer (Centro LB960; Berthold). The amount of ATP was determined by a standard concentration curve, and ATP content values were corrected for protein concentration and normalized to sham-treated samples.

HPLC measurement of intracellular AMP and ATP levels

ATP and AMP levels were monitored by means of HPLC analysis. Neurons were lysed in 0.5 M KOH and adjusted to pH 6.5 by the addition of 1 M KH2PO4. HPLC analysis of AMP and ATP peaks was performed as previously described (Weisová et al., 2009).

Immunofluorescence analysis

Cells were fixed with 4% paraformaldehyde for 20 min, permeabilized in PBS containing 1% Triton X-100, washed three times with PBS, and blocked for 1 h in 5% goat serum in PBS. The primary antibodies used were either a rabbit polyclonal anti-AIF antibody (Suter et al., 2000) diluted 1:500 (gift from M. Jäättelä, Danish Cancer Society, Copenhagen, Denmark) or a rabbit polyclonal anti–phospho (Ser63) c-Jun antibody (Cell Signaling Technology) diluted 1:250. Primary antibodies were detected by incubation for 2 h at room temperature in a 1:500 dilution of either FITC- or rhodamine-conjugated goat anti–rabbit secondary antibody (Jackson ImmunoResearch Laboratories, Inc.).

Gene-targeted mice

The generation and genotyping of puma−/−, bim−/−, and bid−/− mice have previously been described (Bouillet et al., 1999; Villunger et al., 2003; Kaufmann et al., 2007). The puma−/− and bid−/− mice were generated on an inbred C57BL/6 background, using C57BL/6-derived embryonic stem cells. The bim−/− mice were originally generated on a mixed C57BL/6 × 129SV genetic background, using 129SV-derived embryonic stem cells, but had been backcrossed for >12 generations onto the C57BL/6 background.

Statistical analysis

Data are presented as means ± SEM. For statistical comparison, one-way analysis of variance (ANOVA) followed by Tukey’s test was used. P-values <0.05 were considered to be statistically significant.

Online supplemental material

Fig. S1 shows the quantification of neuronal cell death after NMDA treatment. Fig. S2 shows the up-regulation of Bim in OHSCs subjected to NMDA-induced excitotoxic injury. Fig. S3 shows that AMPK activation triggers Bim-dependent cell death in CGNs. Fig. S4 shows that JNK inhibition protects against excitotoxic apoptosis. Fig. S5 shows that compound C reduces NMDA-induced excitotoxic injury. Online supplemental material is available at


We are grateful to Prof. David Carling for the gift of the CA-AMPK plasmid, Prof. Eric Lam for the Bim promoter plasmid, and Prof. Marja Jäättelä for the AIF antibody. We thank David Kennedy for help with HPLC experiments and Ina Woods, Simone Poeschel, and Sarah Cannon for excellent technical assistance.

This study was supported by grants from Science Foundation Ireland (08/IN1/1949) and the Health Research Board (RP/2006/333) to J.H.M. Prehn as well as the National Health and Medical Research Council (program #461221) to A. Strasser. L.P. Tuffy is a recipient of an Irish Research Council for Science, Engineering, and Technology scholarship (325/2005), and D. Dávila holds a Marie Curie Intra-European Fellowship for Career Development (PIEF-GA-2009-237765).


Abbreviations used in this paper:

5-aminoimidazole-4-carboxamide riboside
apoptosis-inducing factor
AMP-activated protein kinase
analysis of variance
Bcl-2 homology domain 3
constitutively active AMPK-α1
Ca2+/calmodulin-dependent kinase kinase β
cerebellar granular neuron
delayed Ca2+ deregulation
day in vitro
high performance liquid chromatography
N-methyl-d-aspartic acid
organotypic hippocampal slice culture
propidium iodide
permeability transition pore
quantitative PCR
tetramethyl rhodamine methyl ester
wild type


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