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Acta Crystallogr C. 2010 April 15; 66(Pt 4): o174–o175.
Published online 2010 March 6. doi:  10.1107/S0108270109049361
PMCID: PMC2850304
Tri-tert-butyl 3-oxo-4-oxa-1,8,11-tri­aza­spiro­[5.6]dodecane-1,8,11-tri­acetate
Raghvendra Singh Sengar,ab Steven J. Geib,c Archana Nigam,a and Erik C. Wienerabd*
aUniversity of Pittsburgh Cancer Institute, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
bDepartment of Radiology, University of Pittsburgh, Pittsburgh, Pennsylvania 15213, USA
cDepartment of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
dDepartment of Bioengineering, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
Correspondence e-mail: wienere/at/upmc.edu
Received September 4, 2009; Accepted November 18, 2009.
Abstract
The title compound, C26H45N3O8, is a bicyclic mol­ecule; the seven-membered diazepane ring has a twisted-chair conformation and the six-membered morpholine ring has a boat conformation.
The chemistry of 1,4-diazepane-based ligands is attracting increasing attention since these ligands have strong binding capabilities with different metal ions, including main group metals, transition metals and lanthanides (Comba et al., 2009 [triangle]; Ge et al., 2007 [triangle], 2009 [triangle]; Peralta et al., 2005 [triangle]; Rey et al., 2007 [triangle]). In particular, it has been proposed that gadolinium(III) complexes of 6-amino-6-methyl­perhydro-1,4-diazepinetetra­acetic acid (AAZTA) ligands are good candidates as MRI (magnetic resonance imaging) contrast agents due to their good thermodynamic stability, kinetic inertness and high relaxivity at neutral pH (Aime et al., 2004 [triangle]).
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Object name is c-66-0o174-scheme1.jpg Object name is c-66-0o174-scheme1.jpg
Recently, we reported the syntheses and characterization of new bifunctional AAZTA ligands with hydr­oxy side chains, and the crystal structures of their gadolinium and europium complexes (Sengar et al., 2008 [triangle], 2009 [triangle]). The title compound, (I), was used as a precursor for one of the bifunctional ligands with a hydr­oxy arm and the complete synthesis and spectroscopic characterization of (I) was provided (Sengar et al., 2009 [triangle]). We report herein the mol­ecular structure of compound (I) determined by X-ray crystallography (Fig. 1 [triangle]).
Figure 1
Figure 1
The mol­ecular structure of (I), showing one of the mol­ecules in the unit cell, with displacement ellipsoids drawn at the 50% probability level. H atoms have been omitted for clarity.
Compound (I) crystallizes with two independent mol­ecules in the asymmetric unit and these exhibit similar conformations. The r.m.s. deviation of the two molecules based on a fit of all non-H atoms is 0.353 Å, calculated by PLATON (Spek, 2009 [triangle]). The maximum deviations were observed for the tert-butyl ester groups. As expected, compound (I) contains two rings, viz. a seven-membered 1,4-diazepane ring with a twisted-chair conformation and a six-membered morpholine ring which adopts a boat conformation (Fig. 1 [triangle]). For the seven-membered ring, the approximate plane can be defined by N4/C29/N5/C27, with atoms C30, C43 and C28 deviating above and below this plane. For the six-membered ring, atoms C44 and C46 occupy the prow and stern positions, respectively. The two rings are connected to each other via spiro atom C43 in a near orthogonal fashion; the dihedral angles for the N5/C30/C43/N6 and N4/C27/C43/C44 planes are –87.0 (2) and −71.9 (2)°, respectively [−85.6 (2) and –72.8 (2)°, respectively, for the other molecule in the unit cell].
The diazepane and morpholine rings in the two molecules have slightly different puckering parameters (Cremer & Pople, 1975 [triangle]), as given in Table 1 [triangle]. The puckering parameters for the seven-membered ring in (I) are different from the values for the AAZTA chelate (Table 1 [triangle]) or the protonated diazepane (daza-3HCl-3H2O) chelate (Romba et al., 2006 [triangle]). This shows that a large degree of flexibility is associated with the diazepane ring, which gives rise to the different puckering parameters for non­coordinated ligands. However, upon metal coordination, the diazepane ring adopts a pseudo-chair conformation and all three N atoms coordinate to the metal ion in a facial mode (Aime et al., 2008 [triangle]).
Table 1
Table 1
Puckering parameters for (I) and the AAZTA chelate
Compound (I) was synthesized according to the literature procedure of Sengar et al. (2009 [triangle]). Colorless crystals suitable for X-ray analysis were obtained by slow evaporation from a dichloromethane solution of (I) in air.
Crystal data
  • C26H45N3O8
  • M r = 527.65
  • Triclinic, An external file that holds a picture, illustration, etc.
Object name is c-66-0o174-efi1.jpg
  • a = 11.1304 (17) Å
  • b = 15.250 (2) Å
  • c = 18.098 (3) Å
  • α = 99.305 (4)°
  • β = 90.010 (3)°
  • γ = 100.168 (3)°
  • V = 2982.5 (8) Å3
  • Z = 4
  • Mo Kα radiation
  • μ = 0.09 mm−1
  • T = 203 K
  • 0.24 × 0.18 × 0.13 mm
Data collection
  • Bruker SMART APEX CCD diffractometer
  • Absorption correction: multi-scan (SADABS; Bruker, 2003 [triangle]) T min = 0.962, T max = 0.980
  • 21467 measured reflections
  • 11582 independent reflections
  • 7769 reflections with I > 2σ(I)
  • R int = 0.052
Refinement
  • R[F 2 > 2σ(F 2)] = 0.061
  • wR(F 2) = 0.170
  • S = 1.04
  • 11582 reflections
  • 667 parameters
  • H-atom parameters constrained
  • Δρmax = 0.58 e Å−3
  • Δρmin = −0.22 e Å−3
H atoms were placed in calculated positions and refined using a riding model [C—H = 0.97 Å and U iso(H) = 1.5U eq(C) for methyl H atoms, and C—H = 0.98 Å and U iso(H) = 1.2U eq(C) for methylene H atoms].
Data collection: SMART (Bruker, 2003 [triangle]); cell refinement: SAINT-Plus (Bruker, 2003 [triangle]); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 [triangle]); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S0108270109049361/fn3037sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S0108270109049361/fn3037Isup2.hkl
Acknowledgments
The authors thank the NIH for financial support (grant Nos. R01-CA098717, R01-CA87009 and 2P30-CA47904).
Footnotes
Supplementary data for this paper are available from the IUCr electronic archives (Reference: FN3037). Services for accessing these data are described at the back of the journal.
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