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J Am Soc Mass Spectrom. Author manuscript; available in PMC 2011 January 1.
Published in final edited form as:
PMCID: PMC2821426
NIHMSID: NIHMS175004

New Reagents for Increasing ESI Multiple Charging of Proteins and Protein Complexes

Abstract

The addition of m-nitrobenzyl alcohol (m-NBA) was shown previously (Lomeli et al., J. Am. Soc. Mass Spectrom. 2009, 20, 593–596) to enhance multiple charging of native proteins and noncovalent protein complexes in electrospray ionization (ESI) mass spectra. Additional new reagents have been found to “supercharge” proteins from nondenaturing solutions; several of these reagents are shown to be more effective than m-NBA for increasing positive charging. Using the myoglobin protein-protoporphyrin IX (heme) complex, the following reagents were shown to increase ESI charging: benzyl alcohol, m-nitroacetophenone, m-nitrobenzonitrile, o-NBA, m-NBA, p-NBA, m-nitrophenyl ethanol, sulfolane (tetramethylene sulfone), and m-(trifluoromethyl)-benzyl alcohol. Based on average charge state, sulfolane displayed a greater charge increase (61%) than m-NBA (21%) for myoglobin in aqueous solutions. The reagents that promote higher ESI charging appear to have low solution-phase basicities and relatively low gas-phase basicities, and are less volatile than water. Another feature of mass spectra from some of the active reagents is that adducts are present on higher charge states, suggesting that a mechanism by which proteins acquire additional charge involves direct interaction with the reagent, in addition to other factors such as surface tension and protein denaturation.

Keywords: electrospray ionization, noncovalent complexes, proteins, supercharging

Introduction

Electrospray ionization is distinguished among other desorption/ionization sources for mass spectrometry by its ready generation of multiply charged molecules, the value of which was recognized early by Fenn’s group: “This feature is very attractive in that it extends the effective mass range of any analyzer by a factor equal to the number of charges per ion. Moreover, because the ions have lower m/z values, they are generally easier to detect and weigh than are singly charged ions of the same mass [1].”

After the utility of ESI-MS for protein analysis was demonstrated, multiple charging was rapidly extended to tandem mass spectrometry of large peptides and proteins [2, 3]. Dissociation efficiency of large molecules is enhanced with increasing charge, allowing sequence-informative product ions to be measured. Early ESI-MS studies investigated the potential of different solvents to increase charging [4]. However, useful enhancement of ESI multiple charging was not described clearly until Iavarone and Williams’ reported “supercharging” promoted by agents such as m-nitrobenzyl alcohol (m-NBA) [5, 6]. For protein analyses, their work largely investigated solutions considered to be denaturing.

Recently, we demonstrated that multiple charging of noncovalent protein complexes could be increased in ESI-MS when spectra are obtained from nondenaturing protein solutions containing up to 1% (v/v) m-NBA [7]. Increases in charge ranged from 8% for the 690 kDa 20S proteasome complex to 48% additional charge for zinc-bound 29 kDa carbonic anhydrase protein. These protein structures were considered native because no dissociation of noncovalently bound ligands, subunits, or metal ions was observed from complexes sprayed out of the solution compositions described, nor were differences revealed by circular dichroism or hydrogen/deuterium exchange solution phase measurements.

The present report describes new compounds as potent as m-NBA in supercharging native protein complexes (e.g., myoglobin), and provides preliminary data revealing their utility with denaturing solutions. Many of the newly described compounds for increasing ESI multiple charging are structurally similar to m-NBA. We discuss possible physical and chemical properties impacting multiple charging behavior.

Experimental

Positive ion ESI mass spectra were acquired in similar fashion to our previous study [7] and with two different systems: a hybrid quadrupole time-of-flight (QTOF) mass spectrometer with a Triwave ion mobility (IM) separator (QTOF/IM; Waters Synapt HDMS, Manchester, UK) and an LTQ-FT Ultra Fourier transform mass spectrometer (Thermo Fischer Scientific, San Jose, CA USA). The nanoESI source using borosilicate glass capillaries with Au/Pd coatings (Proxeon Biosystems, Odense, Denmark) was operated at low analyte flow conditions (50 nL/min). All protein samples were desalted with 20 mM ammonium acetate prior to analysis using centrifugal filter devices. The final protein concentration for ESI-MS measurements was approximately 5 μM in 20 mM ammonium acetate, pH 6.8. Increased ESI-generated charge states for native protein complexes were enabled by adding m-NBA and other compounds directly to the protein solutions. ESI mass spectra of proteins in denaturing solutions were acquired with an LTQ linear ion trap system (Thermo Fischer Scientific) with a nanoESI source (New Objective, Woburn, MA USA).

For a given comparison, instrument settings are held constant as reagent concentration is varied, to ensure that changes to the stability and charging of protein complexes may properly be attributed to changes in solution conditions.

Equine myoglobin, bovine insulin, and phosphorylase b (glycogen phosphorylase, rabbit muscle) were purchased from Sigma-Aldrich (St. Louis, MO, USA), as were ortho-, meta-, and para-nitrobenzyl alcohol, benzyl alcohol, α-(4-pyridyl N-oxide)-N-tert-butylnitrone (POBN), 3-nitrophenyl ethanol, nitrobenzene, 3′-nitroacetophenone, 3-nitrobenzonitrile, 3-nitrophenol, sulfolane, and 3-trifluoromethyl benzyl alcohol.

Results and Discussion

Supercharging, the increased ESI charging observed when m-NBA and other liquids are added to denatured protein solutions, has been attributed to the charged residue model (CRM) relationship linking the Rayleigh limit of droplet charge (zR) to surface tension (γ), droplet radius (R), the permittivity of vacuum (ε0), and elementary charge, e [8]:

zRe=8π(ε0γR3)1/2

Mature droplet surface tension is often approximated by the value for the lowest-vapor pressure solvent component [6, 8].

Inconsistencies with this supercharging model [5, 6] have been noted: (1) the CRM is suggested to apply only to non-denatured proteins [4], (2) that mature droplet composition should reflect solvent evaporation rates rather than equilibrium vapor pressures, questions some experimental support [9], and (3) folded protein charge state distributions from pH 7 aqueous solutions did not shift to lower charge following addition of 40% propylene glycol [9]. Our results for m-NBA addition [7], displaying increased charging with little-to-no dissociation of noncovalently bound ligands/subunits from aqueous, near neutral-pH solutions are also inconsistent with this model. Although m-NBA has a reported surface tension of 50 ± 5 mN/m [10], water’s value at 25°C is higher, 72.0 mN/m [11].

Attempting to locate new supercharging agents with m-NBA-like ability to increase charging from near-native solutions, we examined analogous molecules, employing the myoglobin-heme complex as the primary test protein. Numerous reagents were examined at concentrations up to their maximum solubility, or until protein denaturation was evident (as judged by significant loss of noncovalently-associated heme or by a discontinuous change in charge profile with increasing reagent concentration).

Nitrobenzyl alcohol’s ortho- and para-isomers, solids at room temperature, and the liquid meta-isomer, are all potent charge enhancing reagents. When electrosprayed from non-denaturing solutions, holo-myoglobin displayed 7+ – 9+ heme-associated ions. Addition of o-NBA to 20 mM increased the level of protonation without detaching heme, elevating the most intense ion’s charge state by almost 2 units. The para-isomer, p-NBA, also increased the charge of myoglobin cations without dislodging heme, up to the p-NBA solubility limit of 12 mM, at which concentration the most abundant protein charge state was 1 unit higher. Previously identified supercharging agent m-NBA increased holo-myoglobin’s average charge by almost 2 units when present at 40 mM [7].

Extending the alkyl alcohol chain by a –CH2 unit to form m-nitrophenyl ethanol yielded a reagent also affording supercharging. Other effective nitrobenzene derivatives included m-nitroacetophenone and m-nitrobenzonitrile. Despite its limited solubility in the ammonium acetate/water solvent (< 13 mM), m-nitroacetophenone increased holo-myoglobin average charge by almost 2 units and the maximum charge increased from 9+ to 12+. Similarly, addition of 1.5 mM m-nitrobenzonitrile increased the maximum charge state for holo-myoglobin to 15+. Thus, each of the reagents tested elevates charge to a different extent (Table 1, Figure 1).

Figure 1
ESI-MS (QTOF/IM) of equine holo-myoglobin in (a) 20 mM ammonium acetate, and with (b) 1.5 mM m-nitrobenzonitrile, (c) 38.8 mM o-NBA, (d) 23 mM m-nitrophenyl ethanol, and (e) 276 mM sulfolane.
Table 1
Compounds that enhance ESI-MS charging of myoglobin noncovalent complex

Among the reagents that promote more multiple charging than the NBAs is sulfolane (tetramethylene sulfone). For example, addition of 276 mM sulfolane increased the maximum charge state of holo-myoglobin from 9+ to 18+ (Figure 1); maximum charging for holo-myoglobin with m-NBA is only 12+. The average charge state of holo-myoglobin increased with increasing sulfolane concentration (Supplemental Materials). Sulfolane was used previously as a liquid matrix in the early days of fast atom bombardment (FAB) [12, 13] and more recently for infrared matrix-assisted laser desorption/ionization (IR-MALDI) [14]. (Coincidentally, m-NBA was used as a FAB matrix [15] and as a liquid matrix for UV-MALDI [16].) ESI-MS behavior of other protein-ligand and protein-protein complexes, such as 29 kDa carbonic anhydrase-Zn, 22 kDa adenylate kinase-ATP, and the 195 kDa phosphorylase b dimer, were tested with some of the reagents above that increased charging for holo-myoglobin (Supplemental Materials); in all cases, the noncovalent complex’s charging increased without significant subunit or ligand dissociation.

In contrast, many related compounds did not promote increased charging, such as nitrobenzene and m-nitrophenol. Nitrobenzene additions to 0.5% v/v did not alter myoglobin charge state distributions. At 0.9% v/v (88 mM), close to the miscibility limit, unresolved peaks tailed to higher m/z, suggesting adduct binding and/or incomplete desolvation. Adding 5 mM α-(4-pyridyl N-oxide)-N-tert-butylnitrone (POBN) reduced charging, shifting the most intense holo-myoglobin ion from 8+ to 7+.

Several of the compounds tested appeared to induce denaturation in-solution, judged by the appearance of an ion series representing the apo-protein (heme loss) [17]. m-Nitrophenol addition to 5 mM did not affect holo-myoglobin charge state distributions and detached no heme. Addition to 20 mM, however, induced an 8+ – 16+ apo-myoglobin ion series, appearing with relatively unchanged 7+ – 9+ holo-myoglobin ions.

Benzyl alcohol is an example of a reagent that increased holo-myoglobin protonation up to a maximum charge of 14+ in 2.5% (v/v), with little evidence of the apo-form, but higher concentrations yielded significant heme-loss. The onset of denaturation appeared at about 3% benzyl alcohol (~275 mM), marked by the appearance of three charge state distributions, two for the holo-protein with maxima at 12+ and 9+, and 1 for the apo-form, maximizing at 12+/11+. Even nitrobenzyl alcohol isomers induced some denaturation; heme-loss required o-NBA concentrations greater than 38 mM. However, even at this concentration apo- ions accounted for only 5% of the total myoglobin signal.

Increasing the charge deposited on peptides and proteins electrosprayed from denaturing solutions is desirable for many analytical applications. Fortunately, the new reagents also increased protein charge from denaturing solutions. m-Nitrobenzonitrile (22 mM) and sulfolane (300 mM) potently supercharge insulin when sprayed from 0.1% formic acid/50% CH3CN/49.9% H2O (v/v/v), shifting insulin’s average charge from 4.2 to 5.4 and 5.7, respectively (data not shown).

Many of the charge-enhancing additives we employed are organic solids, expected to reduce surface tension in aqueous systems [18]. Surfactants are also well-known for their ability to reduce surface tension. Surface tensions decrease with increasing surfactant, up to the critical micelle concentration (CMC). In work with non-ionic saccharide detergents [19], famed for their ability to solubilize membrane proteins and complexes without denaturation [20, 21], we reported that peptide and protein charge state distributions shifted to higher charge with increasing concentrations of the detergents, such as n-octyl and n-dodecyl glucoside, n-dodecyl sucrose, and n-dodecyl maltoside. Shifts to higher charge were observed for polypeptides electrosprayed from 100% H2O and from 4% acetic acid/50% CH3CN/46% H2O (v/v/v). Despite reduced surface tension, the average charge observed for denatured bovine ubiquitin shifted from 10.9 to 11.3, 12.1 and 12.3 with 0%, 0.01%, 0.1%, and 1.0% w/v n-hexyl glucoside (CMC= 7.0% w/v), respectively.

Preliminary analysis of the data indicates that “active” reagents appear to have low solution-phase basicities and relatively low gas-phase basicities, revealed by the absence of protonated reagent ions in the low m/z region of the spectrum. Both “active” and inactive reagents are less volatile than water. Active reagent ions were observed as clusters, typically charged by addition of ammonium or sodium cations. Not all low-basicity reagents supercharged proteins sprayed from aqueous solutions, however, suggesting that it is only one component of the overall mechanism.

Another feature of mass spectra from some active reagents is that adducts are present on higher charge states (e.g., m-NBA; see Supplemental Materials found in [7]), contrasting with typically observed counterions (e.g., phosphate or sulfate) associated with low charge states. Because ion activation scales with charge, the adducts’ association with higher charge states does not reflect mere clustering or incomplete desolvation, processes which would favor lower charge states. NBA’s association with low m/z myoglobin ions suggests that the mechanism by which proteins acquire additional charge involves direct interaction with the reagent.

Very likely, other factors [22] contribute to the enhanced charging promoted by these reagents. Surface tension [5, 6] and solution phase denaturation due to droplet heating [23] are among those that may also play a role. Whether the structure of the macromolecule or charge-enhanced ion has been altered is not clear, and is a question we are actively pursuing. It is clear, however, that these new reagents increase protein charge significantly in ESI of denaturing and non-denaturing solutions, beyond CRM predictions. Maximally 10.4 charges are predicted by CRM for myoglobin sprayed from H2O [8], with 8.7, 7.7, and 7.3 charges for solutions supplemented with m-NBA, benzyl alcohol, or sulfolane (assuming aged droplets comprised only of supplement molecules). Introducing noncovalent protein complexes with higher charge densities will relax m/z requirements for MS detectors and will enhance dissociation efficiency for MS/MS of proteins and complexes.

Supplementary Material

01

Acknowledgments

JAL acknowledges support from the National Institutes of Health (RR 20004) and the NIH/NCRR High-End Instrumentation Program (S10 RR023045). We are grateful for helpful discussions with Jack Beauchamp (Cal Tech), Julie Leary (UC Davis), Evan Williams (UC Berkeley), and especially Frank Turecek (Univ. Washington), who suggested sulfolane as a reagent. SHL was supported by the NIH/NIGMS Ruth L. Kirschstein Individual NRSA Fellowship Program (F31GM075384).

Footnotes

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