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Logo of nihpaAbout Author manuscriptsSubmit a manuscriptHHS Public Access; Author Manuscript; Accepted for publication in peer reviewed journal;
 
Tetrahedron Lett. Author manuscript; available in PMC 2011 January 1.
Published in final edited form as:
Tetrahedron Lett. 2010; 51(1): 197–200.
doi:  10.1016/j.tetlet.2009.10.124
PMCID: PMC2789577
NIHMSID: NIHMS157466

Synthesis of labeled meropenem for the analysis of M. tuberculosis transpeptidases

Abstract

A concise synthesis of 14C labeled meropenem prepared from 14C dimethylamine hydrochloride is described. Using a similar reaction sequence, the meropenem nucleus was also attached to biotin providing a probe for protein interaction studies.

The mycobacterial cell wall is a complex, multi-layered heteropolymer composed of a peptidoglycan core that is covalently bound to arabinogalactan and mycolic acids.13 Although the size and hydrophobic nature of this complex contribute to the impermeability of mycobacteria to many antibiotics,4,5 other features likely contribute to resistance to specific classes of antibiotics. The β-lactams (penicillins, cephalosporins, and carbapenems) are the most widely prescribed anti-infectives and derive their biological activity through the acylation and deactivation of the transpeptidases involved in peptidoglycan crosslinking.68 Mycobacterium tuberculosis (Mtb) contains at least one chromosomal β-lactamase, Rv2068c, a Class A, extended spectrum β-lactamase.9 Rv2068c can be inhibited by clavulanic acid and thus combinations of antibiotic and β-lactamase inhibitor or newer classes of β-lactamase resistant antibiotics should prove effective for treating tuberculosis.

Historically the β-lactams have not been used in treating tuberculosis despite the fact that the peptidoglycan of mycobacteria is extensively crosslinked and the β-lactams penetrate the cell wall and inhibit transpeptidase targets in Mtb.11,12 A recent explanation for this paradox suggested that the mycobacterial cell wall actually contains two distinct types of crosslink.13 The more intensively studied 4-3 crosslinks (Figure 1) are synthesized by a class of D,D transpeptidases called penicillin binding proteins that are inhibited by the β-lactams. In several species of bacteria including M. tuberculosis, a different type of 3-3 crosslink (Figure 1) has been observed. These crosslinks are formed by L,D transpeptidases, a new class of cysteine transpeptidase previously thought to be insensitive to β-lactams but now known to be inhibited by the carbapenem class of β-lactam antibiotics. Conceivably, the 3-3 crosslinks provide an alternative architectural modification and some evidence suggests that these linkages play a role in stationary phase rigidification providing benefits for the long term survival of non-replicating bacilli.1420

Figure 1
Two Types of Peptidoglycan Crosslink in M. tuberculosis

The carbapenems, a class of four FDA approved antibiotics (imipenem, meropenem, ertapenem and doripenem) are β-lactams with a structure derived from the natural product thienamycin.21 This class received much attention due to its broad spectrum potency notably towards gram negative and anaerobic bacteria, its stability to clinically significant β-lactamases, and its rapid, bactericidal activity.22 The penicillins and cephalosporins contain fused bicyclic structures, and are suicide substrates reminiscent of D-Ala-D-Ala, the substrate for the 4-3 transpeptidation reaction, as originally suggested by Tipper and Strominger (Figure 2).6 The saturated five membered thiazolidine ring of the penicillins and the saturated six membered dihydrothiazoline ring of the cephalosporins reveal common precursors in valine and cysteine. While the differences in core structure and N-acyl substitution account for differences in reactivity, β-lactamase stability, and spectrum of activity, the putative targets of these compounds are still D,D transpeptidases. The structural similarity of the carbapenem core, the hydroxyethyl and sulfide linked proline sidechains excepted, suggested that the carbapenems also inhibited the D,D transpeptidases. This fact was corroborated in several studies,2325 however recent evidence suggests the L,D transpeptidases are another possible target.

Figure 2
Common β-lactam Structures

The recent discovery that the peptidoglycan of stationary phase cultures of M. tuberculosis contains up to 80% 3-3 crosslinks contrasted strikingly with the traditional view of mycobacterial peptidoglycan and strongly supported the notion that the L,D transpeptidases contribute to resistance to the β-lactam antibiotics.26 More intriguingly, a putative L,D transpeptidase, Mtb Rv0116c, (LdtMtb), was inhibited by meropenem, and from studies conducted in our laboratory, meropenem demonstrated efficacy against extensively drug resistant (XDR)-TB when co-administered with the β-lactamase inhibitor clavulanic acid.27 This combination was also active against non-replicating bacilli, suggesting an essential remodeling or recycling function of these enzymes in metabolically static bacteria. With the immediate goal of identifying the protein targets of the carbapenems in whole cells of M. tuberculosis, we undertook the synthesis of two labeled forms of meropenem for use as probes.

The synthesis of 14C labeled meropenem (1, Scheme 1) utilizes bicyclic intermediate 2 (prepared in 2 steps from trans 4-hydroxy-L-proline)28,29 which is synthesized in kilogram quantities for the production of Merrem®. From 2, the synthesis was optimized at milligram scale for introduction of the radiolabel. Unlabeled intermediates were prepared as TLC standards and spectral data is contained in the supporting information. A 250 µCi sample of 14C labeled Me2NH-HCl (4.0 mg) was obtained from American Radiolabeled Chemicals specially prepared in acetonitrile. This reagent was treated with DIPEA (18 µL, 107 µmoles) and 2 (16 mg, 52 µmoles) for 2 h at 0 °C. The solution was subsequently treated with unlabeled Me2NH-HCl (4.4 mg, 54 µmoles), DIPEA (18 µL, 107 µmoles) and stirred for an additional 2 h at 0 °C. While there are reports of in situ opening of 2 and coupling to 4, we purified the thiol intermediate 3 by flash chromatography (SiO2, 5% MeOH-CH2Cl2). Labeled 3 was coupled to the carbapenem enol phosphate 4 (35 mg, 59 µmoles, Bosche Scientific) with DIPEA (20 µL, 112 µmoles) in acetonitrile (0.5 mL, 3h, 25 °C) to provide 5 (19 mg, 56% two steps). Hydrogenolysis of 5 (10 mg, H2, 10% Pd/C, 1 atm, 2 h), in a biphasic (1:1, 2 mL) solvent system of ethyl acetate:aqueous potassium phosphate buffer (0.050 M, pH = 7) followed by removal of the catalyst by filtration through Celite, wash of the aqueous layer with ethyl acetate (2 × 1 mL) provided an aqueous solution of labeled meropenem 1 which was pure by non radiographic TLC (Rf = 0.25) 7:3 MeOH-CH2Cl2), radiographic TLC is contained in the supporting info. The aqueous phase containing the pure, labeled antibiotic was adjusted with additional phosphate buffer to a volume of 1.0 mL (29.3 µCi/mL, 22% radioactive yield) and was stored in 100 µL aliquots and frozen at −30 °C for future use.

Scheme 1
14C Labeled Meropenem Synthesis

We also considered the use of an alternative, non-radioactive label for utilization in a protein pull-down strategy (Scheme 2). Since the radiolabeled meropenem synthesis relied on the introduction of a labeled amine, it would be advantageous to introduce an alternative label in a similar fashion with the only constraints that the label be compatible with the carbapenem nucleus and not impart any significant steric demand. Biotin does not contain an amine handle, but previous reports documented its introduction by Curtius rearrangement of the carboxylic acid.30 Treatment of biotin (1.0 g, 4.2 mmol) in t-BuOH (15 mL, distilled from CaH2) with DPPA (1.0 mL, 4.6 mmol) and Et3N (0.64 mL, 4.6 mmol) at 95 °C for 14 h provides N-Boc norbiotinamine (1.0 g, 74%). Deprotection of this compound (1.6 g, 5.1 mmol) in neat TFA (3.0 mL) at 25 °C provides the salt 7 isolated as a white solid (1.2 g, 87%). Insoluble in acetonitrile, the reaction of 7 (0.56 g, 1.7 mmol) with 2 (0.50 g, 1.6 mmol) in DMF (8.0 mL) with DIPEA (310 µL, 1.8 mmol) at 25 °C for 2 h provides the thiol 8 (0.450 g, 80%). Coupling of 8 (0.181 g, 0.347 mmol) to 4 (0.206 g, 0.347 mmol) with DIPEA (63 µL, 0.364 mmol) provided 9 (0.215 g, 71%). Hydrogenolysis (H2, 10% Pd/C, 45 psi, 2 h) of 9 (0.233 g, 0.268 mmol) in the biphasic solvent system detailed above (5 mL ethyl acetate: 5 mL phosphate buffer) removed the p-nitrobenzyl ester and carbamate. In this case, the aqueous layer was collected, washed with ethyl acetate (2 × 5 mL), and concentrated in vacuo. The crude residue was dissolved in methanol, filtered to remove the precipitated salts, and concentrated again to provide the biotin labeled meropenem 9 (111 mg, 75%) as a yellow solid, pure by 1H NMR (supporting info). Studies to indentify the targets of meropenem in M. tuberculosis are underway. It is worth noting that 14C and biotin labeled meropenems offer tools to identify and characterize the targets of the carbapenems in other organisms.

Scheme 2
Synthesis of a Biotinylated Carbapenem

Supplementary Material

01

Acknowledgments

We gratefully acknowledge Dr. Kriti Arora and Dr. Pradeep Kumar for help with scintillation counts and biological studies. We would like to thank Dr. Bong-Jin Kim of the Korean Research Institute for Chemical Technology (KRICT) for helpful suggestions and Dr. Noel Whittaker of the National Institute of Diabetes, Digestive and Kidney Diseases (NIDDK) for high resolution mass spectral analysis. Funding was provided by the Intramural Research Program of the National Institutes of Health, National Institute of Allergy and Infectious Diseases.

Footnotes

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Supplementary Material

Supplementary material including 1H NMR spectra and experimental information is available and can be found at ().

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