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Logo of genbioBioMed CentralBiomed Central Web Sitesearchsubmit a manuscriptregisterthis articleGenome BiologyJournal Front Page
Published online 2009 October 1. doi: 10.1186/gb-2009-10-10-r103

Table 1

ALLPATHS, Velvet and EULER assemblies of five microbial genomes: source data

S. aureus E. coli R. sphaeroides S. pombe N. crassa
Source data
 StrainUSA300K12 MG16552.4.1972 h74A
 Reference sequenceFinished, curatedFinished, curatedFinished, curatedFinishedFinished
 GC composition (%)3351693649
 Genome size (kb)2,8734,6394,60312,55439,226
 Reference N50 (kb)2,8734,6393,1884,509665
 Sequence coverage (x)89139370148123

For five genomes, statistics from ALLPATHS, Velvet, and EULER assemblies are shown. In all cases identical data were supplied to both programs. Contigs of size <1,000 bases were discarded. Strain: strain that was sequenced. GC composition: percent of GC base pairs in the finished reference sequence. Genome size: total number of bases in reference. Reference N50: N50 size of reference. Reference sequences: all were finished, and in addition the reference sequences for the three bacterial genomes were curated to ensure full concordance with the samples, as described in the main text. S. aureus, circular chromosome and two plasmids; E. coli, circular chromosome; R. sphaeroides, finished but differs at 374 base positions from our sample, two circular chromosomes, four circular plasmids, and one linear plasmid; S. pombe, three linear chromosomes; N. crassa, finished at the base level, 251 contigs from 7 chromosomes. Sequence coverage: total coverage by usable reads; for a precise definition see Table S3 in Additional data file 1.