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Dev Biol. Author manuscript; available in PMC 2010 December 1.
Published in final edited form as:
PMCID: PMC2783667

Mammalian Merkel cells are descended from the epidermal lineage


Merkel cells are specialized cells in the skin that are important for proper neural encoding of light touch stimuli. Conflicting evidence suggests that these cells are lineally descended from either the skin or the neural crest. To address this question, we used epidermal (Krt14Cre) and neural crest (Wnt1Cre) Cre-driver lines to conditionally delete Atoh1 specifically from the skin or neural crest lineages, respectively, of mice. Deletion of Atoh1 from the skin lineage resulted in loss of Merkel cells from all regions of the skin, while deletion from the neural crest lineage had no effect on this cell population. Thus, mammalian Merkel cells are derived from the skin lineage.

Keywords: skin, development, touch, sensation


Four main classes of sensory receptors in mammalian skin mediate different aspects of the sense of touch (Johnson, 2001; Johnson et al., 2000). One of these specialized structures, the Merkel cell-neurite complex, is thought to be important for two-point discrimination and the detection of texture, shape and curvature. These receptors consist of Merkel cells, a distinct cell population found at the epidermal/dermal border, and the afferent somatosensory fibers that innervate them (Merkel, 1875). Merkel cell-neurite complexes are found in touch-sensitive areas of the skin including whisker follicles, glabrous (hair-less) skin surfaces such as the hands and feet, and specialized epithelial structures in the hairy skin called touch domes (Halata et al., 2003). Although the precise function of Merkel cells is unknown, it is clear that they are required for the characteristic neurophysiological response of Merkel cell-neurite complexes to tactile stimuli (Maricich et al., 2009).

The developmental origins of Merkel cells have been debated for 135 years. Contradictory evidence suggests that these cells are lineally derived from either the neural crest (Grim and Halata, 2000; Szeder et al., 2003) or the skin (Compton et al., 1990; Moll et al., 1990; Moll et al., 1986; Tweedle, 1978). Definitive assignment of the origins of this cell population could provide key insights into the pathogenesis of human diseases such as Merkel cell carcinoma (MCC), a devastating and deadly form of human skin cancer for which no effective treatments are available (Sidhu et al., 2005).

Atoh1 is a basic helix-loop-helix transcription factor that is a mammalian homolog of the Drosophila atonal gene (Akazawa et al., 1995; Ben-Arie et al., 1996). Neurons in the hindbrain and spinal cord, mechanosensory hair cells of the inner ear, and secretory cells of the gut are all derived from the Atoh1-lineage (Ben-Arie et al., 1997; Bermingham et al., 1999; Bermingham et al., 2001; Wang et al., 2005; Yang et al., 2001). In each of these cell lineages, Atoh1 expression begins in precursor cells and continues for varying lengths of time in the terminally differentiated progeny. Atoh1 is also expressed by and necessary for the production of Merkel cells (Ben-Arie et al., 2000; Maricich et al., 2009).

We used genetic lineage tracing and conditional knockout techniques to determine the lineal origin of murine Merkel cells. Selective deletion of Atoh1 from the neural crest and its derivatives had no effect on the Merkel cell population, while deletion in the skin lineage resulted in an absence of Merkel cells from all areas of the body skin. These data provide conclusive evidence for an epidermal origin of mammalian Merkel cells.

Materials and Methods


The generation of Atoh1flox, Atoh1LacZ, Krt14Cre, ROSAR26R and Wnt1Cre mice were described previously (Ben-Arie et al., 1996; Danielian et al., 1998; Dassule et al., 2000; Shroyer et al., 2007; Soriano, 1999). All animals were maintained on mixed genetic backgrounds except for Atoh1LacZ and ROSAR26R mice, which are congenic on the C57Bl/6J strain background. All animal work was conducted in accordance with institutional IACUC guidelines.

Atoh1 conditional knockout (Atoh1CKO) mice were generated by first crossing Krt14Cre or Wnt1Cre mice with Atoh1LacZ mice to generate Krt14Cre/+; Atoh1LacZ/+ and Wnt1Cre/+; Atoh1LacZ/+ animals. These animals were mated with Atoh1flox/flox mice to generate mice of four genotypes: [Cre+/+; Atoh1+/flox], [CreCre/+; Atoh1+/flox], [Cre+/+; Atoh1LacZ/flox] and [CreCre/+; Atoh1LacZ/flox]. Only animals with Krt14Cre and Atoh1LacZ or Wnt1Cre and Atoh1LacZ alleles lack Atoh1 expression in the Krt14Cre (Krt14; Atoh1CKO) or Wnt1Cre (Wnt1; Atoh1CKO) distributions. Mice of the other three genotypes ([Cre+/+; Atoh1+/flox], [CreCre/+; Atoh1+/flox], and [Cre+/+; Atoh1LacZ/flox]) are collectively referred to as “control” because they displayed no abnormal phenotypes and were indistinguishable based on the testing reported here.

Tissue harvesting

For embryos, the day of conception was designated as E0. Pregnant dams were euthanized and embryos dissected from the uterus. Embryonic tails were collected for genotyping.

Adult animals were euthanized, and the skin was shaved and depilated with Surgicream. Back and belly skin, foot pads, and whisker pads were dissected.

All samples were immersion fixed for 15–30 minutes (X-gal) or overnight (immunostaining) in ice-cold 10% neutral buffered formalin (NBF).

Wholemount X-gal staining

Tissue was X-gal stained overnight at 37°C, fixed overnight in 10% NBF at 4°C, then photographed. Tissue was equilibrated in 30% sucrose/1× PBS, embedded in OCT, serially sectioned on a cryostat (25 μm), then counterstained with nuclear fast red solution.


Tissue was equilibrated in sucrose, embedded and cryosectioned. Antibodies: rat anti-keratin 8 (TROMA1, DSHB) 1:20; chicken anti-β-galactosidase (AbCam, cat #ab9361) 1:1000; rabbit anti-Rab3c (Genetex, cat #13298) 1:1000; and rabbit anti-VGLUT2 (Synaptic Systems, cat #135402) 1:3000. Secondary antibodies (Jackson Immunochemicals) were all used at a 1:500 dilution. DAPI was used for counterstaining.


Atoh1 expression in the skin during embryonic development

Atoh1LacZ is an Atoh1-null allele that drives β-galactosidase expression under the control of the endogenous Atoh1 locus, recapitulating Atoh1 expression in all areas of the developing embryo (Ben-Arie et al., 2000; Bermingham et al., 1999; Yang et al., 2001). We compared X-gal staining patterns in the skin of heterozygous Atoh1LacZ/+ (control) and Atoh1LacZ/LacZ (null) embryos. No X-gal staining was detectable in whisker follicles or body skin of E13.5 embryos of either genotype (data not shown). X-gal staining was first seen in whisker follicles of both genotypes at E14.5 (Fig. 1A, G). Developing touch domes of the body skin were first labeled with X-gal product at E15.5 in both genotypes (Fig. 1E, F, K, L).

Fig. 1
β-galactosidase expression driven from the Atoh1LacZ locus is altered in the skin of Atoh1LacZ/LacZ embryos. (A, B, G, H) Whisker pads from E14.5 Atoh1LacZ/+ (A, B) and Atoh1LacZ/LacZ (G, H) embryos. (C, D, I, J) Whisker pads from E15.5 Atoh1 ...

Given the nearly identical appearance of the wholemount preparations, we were surprised to find clear differences between the X-gal staining patterns in skin tissue sections from Atoh1LacZ/+ and Atoh1LacZ/LacZ embryos (Fig. 1B, D, F, H, J, L). Strong cellular staining was present in Atoh1LacZ/+ embryos in the upper portions of whisker follicles and in multiple cells within developing touch domes of the body skin (Fig. 1B, D, F). As in the wholemount preparations, the overall distribution of X-gal staining was the same in Atoh1LacZ/LacZ embryos. However, complete labeling of single cells was replaced by punctate staining of lesser intensity (Fig. 1H, J, L). This quantitative decrease in X-gal staining of Atoh1LacZ/LacZ embryos is likely secondary to the loss of autoregulation of Atoh1 expression in these animals (Helms et al., 2000). The maintenance of low levels of -galactosidase expression in epidermal cells of whisker follicles and touch domes of Atoh1LacZ/LacZ embryos and the presence of similar punctate staining in some epidermal cells of Atoh1LacZ/+ embryos suggested that these cells might serve as Merkel cell precursors.

Atoh1LacZ/LacZ animals lack Merkel cells

We next compared the distribution of β-galactosidase protein with that of keratin 8 (Fig. 2), an early marker of Merkel cells (Moll et al., 1984; Vielkind et al., 1995). We first detected keratin 8 expression in whisker follicles of Atoh1LacZ/+ embryos at E14.5. We counted the number of β-galactosidase-positive, keratin 8-positive and double-positive cells in the whisker follicles of E14.5 (n=3) and E15.5 (n=2) Atoh1LacZ/+ embryos. At E14.5, we found 6 (13%) β-galactosidase-positive cells, 0 (0%) keratin 8-positive cells and 39 (87%) double-positive cells in seven whisker follicles. By E15.5 a large expansion of the Merkel cell population had occurred: we found 91 (27%) β-galactosidase-positive cells, 14 (4%) keratin 8-positive cells and 230 (69%) double-positive cells in seven whisker follicles. Keratin 8 expression in touch domes of body skin was first detected at E16.5 (data not shown), well after the onset of Atoh1 expression (Fig. 1F, L). These data demonstrate that Atoh1 expression precedes the onset of keratin 8 expression.

Fig. 2
Merkel cells are absent from the skin of Atoh1LacZ/LacZ embryos. Tissue sections from whisker pads of E15.5 Atoh1LacZ/+ and AtohLacZ/LacZ embryos immunostained for β-galactosidase (A′, B′) and keratin 8 (A″, B″). ...

By contrast, we never found keratin 8-positive cells in E14.5 (n=3) or E15.5 (n=3) Atoh1LacZ/LacZ embryos (Fig. 2B-B[triple prime]), suggesting that Atoh1 function is required to initiate keratin 8 expression during Merkel cell development. This agrees with our previous data demonstrating the absence of Merkel cells in adult animals harboring a conditional deletion of Atoh1 (Maricich et al., 2009), but extends those data by showing that Merkel cells are missing from the earliest developmental times in Atoh1-null mice.

Merkel cells are not descended from the neural crest lineage

A previous report suggested that murine Merkel cells were descended from the neural crest (Szeder et al., 2003). We attempted to reproduce these findings by conditionally deleting Atoh1 from neural crest cells using the Wnt1Cre line, which drives Cre expression in neural crest and dorsal domains of the developing hindbrain and spinal cord beginning at E8 (Danielian et al., 1998). Conditional knockout (Wnt1; Atoh1CKO; see Materials and Methods for mating strategy) animals died within 24–36 hours of birth, likely secondary to effects of Atoh1 loss on the respiratory centers of the brainstem (SMM, unpublished).

The X-gal staining patterns in the skin of E16.5 Wnt1; Atoh1CKO and control embryos were identical (Fig. 3A,B), and robust staining was present in whisker follicles and touch domes of both genotypes (Fig. 3A′, A″, B′, B″, C, E). In addition, all β-galactosidase-positive cells in the skin of P0 Wnt1; Atoh1CKO newborns were also keratin 8-positive (Fig. 3D-D[triple prime], F-F[triple prime]). Thus, the Wnt1Cre driver is incapable of deleting Atoh1 from the skin.

Fig. 3
Merkel cells are present in the skin of Wnt1; Atoh1CKO animals. (A-B″) Wholemount X-gal staining of E16.5 Wnt1+/+; Atoh1LacZ/flox (Atoh1LacZ/+; A-A″) and Wnt1; Atoh1CKO (B-B″) embryos. Boxed areas in (A) and (B) are shown in (A′, ...

These data could be explained by inefficient recombination of the floxed Atoh1 sequence in Wnt1; Atoh1CKO animals. We performed two types of experiments to rule out this possibility. First, we examined wholemount X-gal staining in hindbrains of Wnt1; Atoh1CKO embryos (Fig. S1). Wnt1 is expressed throughout the rhombic lip, and it encompasses the expression domain of Atoh1 both spatially and temporally. Atoh1LacZ/LacZ animals lose neurons and β-galactosidase expression from multiple nuclei in the hindbrain, including the external cuneate nuclei, cochlear nuclei, and external granular layer of the cerebellum (Wang et al., 2005). P0 Wnt1; Atoh1CKO animals also lose Atoh1-lineal neurons in these hindbrain regions (Fig. S1B), demonstrating that efficient recombination occurs where Cre is expressed. Second, we crossed the Wnt1Cre line to the ROSAR26R reporter line (Soriano, 1999) to fate map neural crest cells in the skin. At E16.5, strong X-gal labeling was present in the head and peripheral nerves of the body but was absent from touch domes and foot pads (Fig. S2A-A[triple prime]). In the skin of adult Wnt1Cre; ROSAR26R mice, X-gal labeling was present in buccal pads, cutaneous nerves, foot pads and touch domes (Fig. S2B, D, F). We therefore examined the distribution of β-galactosidase and keratin 8 in over 100 whisker pad, hairy skin and foot pad sections from two Wnt1Cre; ROSAR26R mice to determine whether any cells co-expressed these proteins (Fig. S2C-C[triple prime], E-E[triple prime], G-G[triple prime]). The β-galactosidase protein distribution was identical to the distribution of X-gal staining in all skin regions (Fig. S2B and C′, D and E′, F and G′). β-galactosidase-positive and keratin 8-positive cells were found in close association in all three regions of the epidermis, but no double-labeled cells were present in any region of the skin in adult Wnt1Cre; ROSAR26R mice. These data verify that Merkel cells are not derived from the Wnt1-expressing neural crest lineage.

Merkel cells are derived from the skin lineage

The Krt14Cre line drives high levels of Cre expression in the basal layer of the epidermis (Dassule et al., 2000; Vassar et al., 1989; Wang et al., 1997). We verified this expression pattern in Krt14Cre; ROSAR26R embryos and adult animals (Fig. S3). X-gal staining was first detected at E13.5 in limited regions of the body skin and face (Fig. S3A-A″). Expression increased throughout the skin by E14.5, especially in developing hair follicles (Fig. S3B-B″). By E15.5, the entire skin surface expressed the reporter (Fig. S3C-C″). This level and distribution of expression was maintained through adulthood (Fig. S3D-D[triple prime]). Thus, Krt14Cre drives Cre expression in all skin regions prior to the onset of Atoh1 expression. We proceeded to generate Krt14; Atoh1CKO animals, which are born in the expected Mendelian ratio, survive to adulthood, and display no overt phenotypes.

Wholemount X-gal stained skin specimens from control and Krt14; Atoh1CKO embryos and adults displayed only minor differences in β-galactosidase expression driven by the Atoh1LacZ locus (Fig. 4A, D, G, J, M, P). However, tissue sections from adult Krt14; Atoh1CKO animals revealed a distribution of X-gal staining reminiscent of that seen in Atoh1LacZ/LacZ embryos (Fig. 1H, J, L). Specifically, punctate X-gal staining was present in touch domes and rete ridges (epithelial invaginations) of the feet in Krt14; Atoh1CKO animals, in contrast to the heavy labeling of individual cells present in control animals (Fig. 4B, E, N, Q). Strong labeling of epidermal cells in the whisker follicles was also present in control and Krt14; Atoh1CKO animals, but individual heavily-labeled cells were present only in control animals (Fig. 4H, K).

Fig. 4
Merkel cells are absent from the skin of adult Krt14; Atoh1CKO animals. All tissue was obtained from 22–25 day old mice. Tissue was prepared for wholemount X-gal staining (A, B, D, E, G, H, J, K, M, N, P, Q) or immunostaining (C-C[triple prime], F-F[triple prime], ...

We next used immunocytochemistry to compare the distribution of Merkel cell markers with that of β-galactosidase in the skin of Krt14; Atoh1CKO animals. In addition to keratin 8, we also examined Rab3c and VGLUT2, two synaptic vesicle proteins that robustly label Merkel cells (Haeberle et al., 2004; Hitchcock et al., 2004; Nunzi et al., 2004). Punctate staining for β-galactosidase was found in all touch domes, whisker follicles and foot rete ridges of Krt14; Atoh1CKO animals, consistent with the X-gal staining pattern in these regions (Fig. 4F′, L′, R′ and Fig. 5B′, D′). However, expression of all three Merkel cell marker proteins was absent from all skin areas of Krt14; Atoh1CKO animals (Fig. 4F″, L″, R″ and Fig. 5B″, D″). These data demonstrate that Merkel cells are absent from the skin of Krt14; Atoh1CKO animals.

Fig. 5
Rab3c and VGLUT2 are not expressed in touch domes of Krt14; Atoh1CKO animals. Hairy skin from P25 Krt14+/+; Atoh1LacZ/+ (Atoh1LacZ/+) (A-A[triple prime], C-C[triple prime]) and Krt14; Atoh1CKO (B-B[triple prime], D-D[triple prime]) mice was immunostained for β-galactosidase, ...


Our data provide the first direct evidence that mammalian Merkel cells are descended from the epidermal lineage. These findings are consistent with indirect evidence for an epidermal origin of Merkel cells in humans (Compton et al., 1990; Moll et al., 1990; Moll et al., 1986) and amphibians (Tweedle, 1978). Interestingly, data from chick/quail chimera studies suggest that avian Merkel cells are derived from the neural crest lineage (Grim and Halata, 2000). Whether mammals and birds truly demonstrate a divergence in the origins of these cells remains unclear.

Our data are somewhat surprising given that a previous study that examined whisker pads from E16.5 Wnt1Cre; ROSAR26R mice reached the conclusion that Merkel cells were derived from the neural crest (Szeder et al., 2003). Our analysis was much more comprehensive, and included examination of the foot pads, hairy skin, and whisker pads from mice of multiple ages in both lineage tracing and conditional knockout experiments. In addition, our data show that the neural crest and Merkel cell lineages are in close contact in all regions of the skin (Fig. S2B, D, F). This raises the possibility that the punctate β-galactosidase and keratin 8 co-labeling seen in the previous study represents contacts between these cells rather than true overlap of these markers within Merkel cells themselves.

Our data establish Atoh1 as the earliest known marker of the Merkel cell population. Simple keratins such as keratins 8 and 18 have been reported to be expressed by murine Merkel cells in the whisker pad as early as E12 and in the body skin at E14 or E15 (Pasche et al., 1990; Vielkind et al., 1995). We first detected keratin 8 expression in Merkel cells of the whisker pads at E14.5, but we did not detect significant keratin 8 expression in touch domes at the embryonic ages that we examined. Atoh1 expression preceded the onset of keratin 8 expression in both regions, and keratin 8 expressing cells always formed a subset of the Atoh1-positive cell population. The early expression of Atoh1, the loss of Merkel cells in animals with constitutive (Atoh1LacZ/LacZ) and conditional (Krt14; Atoh1CKO) deletions of Atoh1, and the importance of Atoh1 for the specification of other cell populations (Ben-Arie et al., 1997; Bermingham et al., 1999; Bermingham et al., 2001; Yang et al., 2001) all suggest that the gene plays an important role in the early specification of Merkel cells.

The Merkel cell population is morphologically heterogeneous (Halata et al., 2003; Nakafusa et al., 2006). This heterogeneity extends to the expression of different neural (neurofilament proteins, nerve growth factor receptor, synaptophysin) and epithelial (villin) proteins by Merkel cells located in different body regions (Eispert et al., 2009). These findings led to the suggestion that some Merkel cells might function in mechanoreception of tactile stimuli, while other “Merkel-like” cells form part of the diffuse neuroendocrine system involved with modulation of peripheral neural responses (Halata et al., 2003). Our data suggest that the morphological and molecular heterogeneity of Merkel cells arise after the cells are specified, as all Merkel cells in the skin are derived from the epidermis and are dependent upon Atoh1 function. The mechanisms involved in subspecialization of this cell population remain unknown, but could be secondary to local environmental factors.

One intriguing finding of our study is the presence of β-galactosidase expression driven from the Atoh1 locus in whisker pads, touch domes and foot pad rete ridges of embryonic Atoh1LacZ/LacZ and adult Krt14; Atoh1CKO animals. This diffuse expression is reminiscent of atonal expression during the formation of Drosophila chordotonal organs. Chordotonal organs are cuticular mechanoreceptors that arise from sensory organ precursor cells, which are specified by atonal (Jarman et al., 1993). Initially, all of the cells in the presumptive receptor field express atonal at low levels. Stochastic events cause up-regulation of atonal in a single cell, which then becomes the sensory organ precursor, while lateral inhibition mediated by the Notch signaling pathway insures that the remaining cells adopt support cell fates (Bertrand et al., 2002). Notch signaling also plays a role in the development of mammalian skin and hair follicles (Fuchs and Raghavan, 2002), and it is critically important for the development of Atoh1-dependent cell populations such as inner ear hair cells and granule cells of the cerebellum (Gazit et al., 2004; Lanford et al., 1999; Woods et al., 2004).

We propose that the β-galactosidase expression seen in the skin of Atoh1LacZ/LacZ embryos and adult Krt14; Atoh1CKO animals identifies developmental fields equivalent to those that give rise to chordotonal organs of the fly. Atoh1-null epidermal cells of these fields are unable to produce Merkel cells because they lack Atoh1, and they are therefore arrested in a primordial developmental field state where all of the cells attempt to express the gene. This interpretation is supported by the fact that the observed intensity of epidermal β-galactosidase expression (high levels in the whisker pads and low levels in other areas) in adult Krt14; Atoh1CKO animals is positively correlated with the normal number of Merkel cells found in those regions. The location and maintenance of these proposed fields are consistent with the observation that Merkel cell numbers are dynamic in adult mammals during the hair cycle and in response to denervation and reinnervation (English et al., 1983; Nakafusa et al., 2006; Nurse et al., 1984). In addition, new Merkel cells must arise from a progenitor population because adult Merkel cells are non-mitotic (Merot and Saurat, 1988; Moll et al., 1996; Vaigot et al., 1987). Finally, dysregulation of gene expression in this proposed developmental field secondary to genetic and environmental insults could lead to the generation of Merkel cell carcinoma. Further studies are needed to determine what roles the Notch signaling pathway may play in the establishment and/or maintenance of this presumptive developmental field, and if these cells remain competent to produce Merkel cells in adult Atoh1 conditional knockout animals.

Supplementary Material



We thank Dr. Huda Zoghbi for thoughtful discussions of the data and Erin Mathes for technical assistance. Confocal imaging was done at the Case Western Reserve University Neurosciences Imaging Center and the Baylor College of Medicine MRDDRC Imaging Core (NIH HD024064). SMM is funded by NINDS 5K08NS53419. EAL is funded by NIAMS AR051219.


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