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From:
Published online 2009 October 31. doi: 10.1186/1471-2164-10-505

Table 1

Genes with high levels of transcripts in either 5- or 11-day-old hypocotyls for which the encoded proteins were identified in a proteomic study performed on the same material.

Functional classAGI numberPredicted or known gene function5-
days
11-dayslog2 of ratio
11-days/5-days
p-value
Proteins acting on carbohydrates
glycoside hydrolase family 16 (xyloglucan endotrans-glycosidases/hydrolases)AT2G06850AtXTH413.2712.62-0.651.96E-01
glycoside hydrolase family 20 (beta-hexosaminidase)AT3G5526010.409.90-0.511.00
glycoside hydrolase family 31AT1G68560AtXYL110.9710.57-0.411.00
carbohydrate esterase family 8 (pectin methylesterase)AT3G14310AtPME311.6610.82-0.841.44E-04
alpha-expansinAT5G02260AtEXPA912.9512.54-0.411.00


Proteases
cysteine protease (papain family)AT4G0161012.7012.50-0.201.00
aspartic protease (pepsin family)AT3G5440010.309.85-0.451.00
aspartic protease (pepsin family)AT5G1077011.739.55-2.170.00E+00


Structural proteins
proline-rich protein (PRP)AT1G2829011.9811.89-0.091.00
LRR-extensinAT3G24480AtLRX410.2610.330.081.00


Proteins involved in oxido-reduction reactions
peroxidaseAT1G71695AtPrx1210.449.48-0.967.29E-07
peroxidaseAT3G21770AtPrx3010.3910.30-0.081.00
early nodulin AtEN20 (protein homologous to blue copper binding protein)AT4G12880plastocyanin11.5611.940.381.00


Proteins with interacting domains
protein homologous to lectin (curculin-like)AT1G78850curculin-like, mannose binding11.8711.37-0.501.00
protein homologous to lectin (curculin-like)AT1G78830curculin-like, mannose binding10.449.90-0.541.00
protein with leucine-rich-repeat domains (LRRs)AT3G20820expressed protein10.8410.26-0.591.00
enzyme inhibitorAT1G73260inhibitor family I3 (Kunitz-P family)12.5413.410.865.77E-05


Proteins related to lipid metabolism
protein homologous to lipase/acylhydrolaseAT1G54030GDSL family10.9610.41-0.541.00


Miscellaneous functions
protein homologous to phosphate-induced proteinsAT5G0944012.6812.14-0.541.00
gibberellin regulated proteinAT5G15230GASA413.1613.930.772.75E-03
protein homologous to germinAT1G09560AtGLP511.3411.06-0.281.00
protein homologous to purple acid phosphataseAT5G3485012.3011.94-0.361.00
protein homologous to purple acid phosphataseAT2G2719011.3411.09-0.251.00


Unknown function
expressed proteinAT5G11420DUF64212.1412.05-0.091.00
expressed proteinAT3G08030DUF64212.4012.06-0.351.00
expressed proteinAT4G32460DUF 64210.8710.10-0.772.20E-03
expressed proteinAT3G20370MATH domain11.4210.92-0.501.00
expressed proteinAT2G34700Ole eI allergen domain11.539.27-2.270.00E+00

Genes are classified by predicted functional domains as described in Methods. The intensity of the signal is expressed as log2. The log2 of ratios between the levels of transcripts at 11-days and 5-days as well as the Bonferroni p-values are indicated.