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Logo of nihpaAbout Author manuscriptsSubmit a manuscriptHHS Public Access; Author Manuscript; Accepted for publication in peer reviewed journal;
J Neurosci. Author manuscript; available in PMC 2009 September 24.
Published in final edited form as:
PMCID: PMC2750039

Cortical Hubs Revealed by Intrinsic Functional Connectivity: Mapping, Assessment of Stability, and Relation to Alzheimer’s Disease


Recent evidence suggests that some brain areas act as hubs interconnecting distinct, functionally-specialized systems. These nexuses are intriguing because of their potential role in integration and also because they may augment metabolic cascades relevant to brain disease. To identify regions of high connectivity in the human cerebral cortex, we applied a computationally-efficient approach to map the degree of intrinsic functional connectivity across the brain. Analysis of two separate fMRI datasets (each n=24) demonstrated hubs throughout heteromodal areas of association cortex. Prominent hubs were located within posterior cingulate, lateral temporal, lateral parietal, and medial/lateral prefrontal cortices. Network analysis revealed that many, but not all, hubs were located within regions previously implicated as components of the default network. A third dataset (n=12) demonstrated that the locations of hubs were present across passive and active task states suggesting that they reflect a stable property of cortical network architecture. To obtain an accurate reference map, data were combined across 127 participants to yield a consensus estimate of cortical hubs. Using this consensus estimate, we explored whether the topography of hubs could explain the pattern of vulnerability in Alzheimer’s disease (AD) as some models suggest that regions of high activity and metabolism accelerate pathology. PET amyloid imaging in AD (n=10) as compared to older controls (n=29) showed high Aβ deposition in the locations of cortical hubs consistent with the possibility that hubs, while acting as critical waystations for information processing, may also augment the underlying pathological cascade in AD.

Keywords: Connectivity, Cognition, Alzheimer’s disease, fMRI, Cortex, Cingulate

The cerebral cortex is organized into parallel, segregated systems of brain areas that are specialized for processing distinct forms of information. Such a divide and conquer architecture is prominent throughout cortical systems but is perhaps best illustrated by the parallel pathways within the visual system (Ungerleider and Mishkin, 1982; Felleman and Van Essen, 1991). Given the presence of segregated processing streams, a challenge to information processing is integration, particularly so for higher-order cognitive processes which simultaneously draw upon information from multiple domain-specific systems.

Based on anatomic evidence, Mesulam (1998) proposed that specific heteromodal areas of association cortex provide nodes of convergence to bind unimodal and other transmodal inputs. These nodes serve as critical gateways for information processing and are lacking selective connections to single sensory modalities. More recently, computational analysis of anatomic connectivity has led to a formal proposal that the cortex may contain a small number of nodes – referred to as hubs – that have disproportionately numerous connections (Sporns et al., 2007). Evidence for hubs comes from network analysis of connectivity from post-mortem tracing techniques in non-human primates (Sporns et al., 2004) and, recently, in vivo tract tracing (Hagmann et al., 2008; Gong et al., in press) and functional MRI in humans (Achard et al., 2006). Hubs serve to integrate diverse informational sources and balance the opposing pressure to evolve segregated, specialized pathways. Hubs may also help to minimize wiring and metabolism costs by providing a limited number of long-distance connections that integrate local networks (Bassett and Bullmore, 2006).

The existence of cortical hubs is relevant to the study of brain disease. Disorders of cognition are thought to reflect aberrant (autism, schizophrenia) or disrupted (aging, closed head injury) cortical connectivity. Maps of cortical hubs, and eventually the detailed paths of fiber tracts supporting them, may provide a means to understand why certain lesions and connectional abnormalities are particularly disruptive. Hubs may also provide insight into Alzheimer’s disease (AD) pathology. AD is associated with the pathological accumulation of misfolded proteins including amyloid- beta (Aβ) (Walsh & Selkoe, 2004; Mattson, 2004). The identification of cortical hubs may explain why certain regions of cortex show disproportionately high levels of metabolism (Minoshima et al., 1997) and, as a result, preferential vulnerability to AD pathology (Buckner et al., 2005; 2008).

The present study used functional connectivity MRI (fcMRI) to map hubs in the human cortex. fcMRI measures intrinsic activity correlations between brain regions that reflect mono- and polysynaptic connectivity (Biswal et al., 1995; see Fox and Raichle, 2007 for recent review). Here we used a computationally-efficient approach to perform high-resolution mapping of functional connectivity across the brain in a large number of individuals and identified those regions of cortex that show disproportionately numerous connections. The approach is similar to that applied by Archard et al. (2006) and Salvador et al. (2008) but extends the method to high-resolution mapping. The results revealed a map of hubs across heteromodal association areas that included regions previously linked to default modes of cognition. Moreover, we found a high correspondence between the locations of hubs and Aβ deposition in AD suggesting that cortical network architecture may contribute to disease vulnerability.



The present studies sought to (1) identify hubs within the human cerebral cortex, (2) determine the stability of hubs across subject groups and task states, and (3) explore whether the locations of hubs correlated with one component of AD pathology (Aβ deposition). The basic analytic strategy was to compute an estimate of the functional connectivity of each voxel within the brain. Regions showing a high degree of connectivity across participants were considered candidate hubs. Our primary measure of connectivity -- degree centrality or degree -- was defined as the number of voxels across the brain that showed strong correlation with the target voxel. Using this procedure, a map of candidate hubs was computed for an average of 24 participants (Data Set 1) and replicated in a second group of 24 participants (Data Set 2). Data Sets 1 and 2 were acquired while participants fixated on a cross-hair. As the results will reveal, the locations of cortical hubs were highly similar between participant groups. To explore in more detail the connectivity patterns of the identified hubs, we employed seed-based and formal network analyses on the combined data set (n=48). To explore whether the identified hubs reflect a stable property of cortex or were task dependent, maps of hubs were estimated in a third group of 12 participants (Data Set 3) that varied the task performed during data collection (passive visual fixation versus continuous task performance). Similar hubs were present across task states. To provide a consensus estimate of the locations of cortical hubs, the data across 127 participants were combined. The consensus estimate was compared to a map of Aβ deposition in early-stage AD obtained using PiB positron emission tomography (PET) imaging to explore whether hub regions are preferentially associated with the locations of Aβ accumulation. To aid visualization, all image maps were projected on to the left and right cerebral hemispheres of the inflated PALS surface using Caret software (Van Essen, 2005).


127 healthy young adults participated in MRI for payment. Table 1 shows the MRI participant demographics. All participants had normal or corrected-to-normal vision and were right-handed, native English speakers. Participants were screened to exclude individuals with a history of neurologic or psychiatric conditions as well as those using psychoactive medications. While our laboratory has previously published fcMRI analyses with comparable data (e.g., Kahn et al., 2008; Vincent et al., 2008), the data presented here are newly acquired and reported for the first time. 39 older adults participated in PET for payment. Table 2 shows the PET participant demographics. Inclusion as a normal control required a normal neurological examination, a Clinical Dementia Rating (CDR; Hughes et al., 1982; Morris, 1993) scale score of 0, and normal cognition (Mini-Mental State Examination [MMSE] > 27). All participants with AD met National Institute of Neurological and Communicative Disorders and Stroke-Alzheimer’s Disease and related Disorders Association criteria for AD (McKhann et al., 1984) and had MMSE scores < 23. Written informed consent was obtained in accordance with guidelines set forth by the institutional review board of Partners Healthcare Inc.

Table 1
fMRI Participant Demographics.
Table 2
PiB-PET Participant Demographics.

MRI Acquisition Procedures

Scanning was performed on a 3 Tesla TimTrio system (Siemens, Erlangen, Germany) using the 12-channel phased-array head coil supplied by the vendor. High-resolution 3D T1-weighted magnetization prepared rapid acquisition gradient echo (MP-RAGE) images were acquired for anatomic reference (TR = 2530 ms, TE = 3.44 ms, FA = 7°, 1.0 mm isotropic voxels). Functional data were acquired using a gradient-echo echo-planar pulse sequence sensitive to blood oxygenation level-dependent (BOLD) contrast (TR = 2500 or 3000 ms, TE = 30 ms, FA = 90°, 36–43 axial slices parallel to plane of the anterior commissure – posterior commissure, 3.0 mm isotropic voxels, 0.5 mm gap between slices). Head motion was restricted using a pillow and foam, and earplugs were used to attenuate scanner noise.

During the functional runs, for Data Sets 1 and 2 the participants’ passively fixated on a visual cross-hair centered on a screen for each of two runs (each run 7 min 24 sec; 148 time points). No additional task was instructed. Participants were asked to stay awake and remain as still as possible. For Data Set 3, the task was varied with two runs of visual fixation and two runs of continuous task performance (each run 5 min 12 sec; 104 time points). For the task, participants decided whether centrally presented visual words represented abstract or concrete entities (Demb et al., 1995). Participants were instructed to respond quickly and accurately, and indicate their response with a right-hand keypress. The task was self-paced with a new word appearing 500 msec after the response thereby minimizing downtime between trials and the potential for mind wandering (see Antrobus et al., 1966; Antrobus, 1968; see also D’Esposito et al., 1997). Order of task was counterbalanced across participants. The visual stimuli were generated on an Apple PowerBook G4 computer (Apple, Inc., Cupertino, CA) using Matlab (The Mathworks, Inc., Natick, MA) and the Psychophysics Toolbox extensions (Brainard, 1997). Stimuli were projected onto a screen positioned at the head of the magnet bore.

MRI Preprocessing

MRI analysis procedures were based on those applied by Biswal et al. (1995) and Lowe et al. (1998) and recently expanded upon in Fox et al. (2005) and Vincent et al. (2006). Preprocessing included removal of the first four volumes to allow for T1-equilibration effects, compensation of systematic, slice-dependent time shifts, motion correction and normalization to the atlas space of the Montreal Neurological Institute (MNI) (SPM2, Wellcome Department of Cognitive Neurology, London, UK) to yield a volumetric time series resampled at 2-mm cubic voxels. Temporal filtering removed constant offsets and linear trends over each run while retaining frequencies below 0.08 Hz. Data were spatially smoothed using a 4-mm full-width half-maximum Gaussian blur.

Several sources of spurious or regionally nonspecific variance then were removed by regression of nuisance variables including: six parameter rigid body head motion (obtained from motion correction), the signal averaged over the whole-brain, the signal averaged over the lateral ventricles, and the signal averaged over a region centered in the deep cerebral white matter. Temporally-shifted versions of these waveforms also were removed by inclusion of the first temporal derivatives (computed by backward differences) in the linear model. This regression procedure removes variance unlikely to represent regionally specific correlations of neuronal origin. Of note, the global (whole-brain) signal correlates with respiration-induced fMRI signal fluctuations (Birn et al. 2006; Wise et al. 2004). By removing global signal, variance contributed by physiological artifacts is minimized. Removal of signals correlated with ventricles and white matter further reduces non-neuronal contributions to BOLD correlations (Bartels and Zeki 2005; Fox et al. 2005).

Removal of global signal also causes a shift in the distribution of correlation coefficients such that there are approximately equal numbers of positive and negative correlations (Vincent et al., 2006) making interpretation of the sign of the correlation ambiguous (Buckner et al., 2008; Murphy et al., 2008). For this reason, we conservatively restrict our explorations to positive correlations although analyses similar to those reported here can also be conducted for negative correlations.

Mapping Hubs Using Functional Connectivity

Candidate hubs were identified as those regions that show disproportionately greater connectivity as compared to other brain regions. In graph theory, these are the vertices with high numbers of edges or connections. Several prior analyses have demonstrated that connectivity among cortical regions is not random or proportionate across regions but rather exhibits ‘small world’ properties including hubs (Sporns et al., 2004; Achard et al., 2006; Bassett and Bullmore, 2006; see also Watts and Strogatz, 1998). The present method measured the connectivity between all regions of the cortex to map candidate hubs using data derived from low-frequency BOLD fluctuations.

Two assumptions were made in interpreting our analyses. First, we assumed that functional connectivity based on BOLD reflects the underlying structure of the neural architecture constrained by anatomy. Task-dependent co-activation of regions was assumed to make a modest contribution. In Data Set 3, we tested this assumption by varying task states. As the results will reveal, while certain components of covariation between regions can be modulated, the locations of hubs represent a property of cortex that persists across task states. Nonetheless it is important to be explicit that the link between underlying anatomic connectivity and intrinsic functional correlations remains unresolved (Fox and Raichle, 2007) and contributions of both anatomically-constrained and state-dependent activity fluctuations may contribute.

Second, we assumed that functional connectivity reflects both mono- and polysynaptic anatomic projections. Consistent with polysynaptic connectivity, activity correlations span multiple levels in hierarchical systems including the visual cortex (e.g., Vincent et al., 2007) and medial temporal lobe memory system (Kahn et al., 2008). Polysynaptic connectivity is clearly illustrated by correlations between the cerebellum and neocortex. Cerebrocerebellar circuits are based only on indirect anatomic projections through the thalamus and pontine nucleus (e.g., Kelly and Strick, 2003). fcMRI reveals contralateral cerebellar correlations with frontal cortex consistent with polysynaptic connectivity (e.g., Allen et al., 2005; Vincent et al., 2008; Krienen and Buckner, submitted). Thus, unlike analyses that use anatomy directly (e.g., Sporns et al., 2007 e.g., Sporns et al., 2008), hubs defined here likely reflect both direct and indirect anatomic projections.

To determine candidate hubs, we measured connectivity based on the number of strongly correlated links to a given brain voxel. This metric is sometimes referred to as degree centrality or degree in graph theory (e.g., Wasserman and Faust, 1994). Specifically, the preprocessed functional runs were subjected to voxel-based whole-brain correlation analysis (see Salvador et al., 2008 for a conceptually similar approach using regional correlations). The time course of each voxel from the participant’s brain defined within a whole-brain mask was correlated to every other voxel time course. As a result an n × n matrix of Pearson correlation coefficients was obtained, where n is the dimension of the whole-brain mask. For computational efficiency, we downsampled the data to 4-mm isotropic voxels. The Pearson R, or product-moment correlation coefficient, computed in the ith row and jth column of this matrix is given by,


where t is the frame count, x[t]i and x[t]j are the voxel intensities at the ith and jth voxel location respectively defined by the whole-brain mask at frame count t. The mean voxel intensity across all of the frame counts at the ith and jth voxel locations is given by [x with macron]i and [x with macron]j respectively.

From the n × n Pearson correlation coefficient matrix, a map of the degree of the connectivity was computed by counting for each voxel the number of voxels it was correlated to above a threshold of r >0.25. A high threshold was chosen to eliminate counting voxels that had low temporal correlation due to signal noise. Different threshold selections did not qualitatively change the results for cortex (see the Supplementary Materials). A final undirected and unweighted adjacency matrix was used to calculate the vertex degree as the number of adjacent links. This measure of connectivity (degree, D) for each voxel (i) with all other voxels (j) is given by:


The map of the connectivity was then standardized by converting to Z scores so that maps across participants could be averaged and compared. The Z score transformation is given by:


where is the mean degree across all the voxels in the whole-brain map and σD is the standard deviation of the map. The conversion to Z score does not affect the topography of the individual-participant maps but does cause the highest values in each participant’s map to be comparably scaled. Reliable peak locations in the degree maps were considered candidate hubs. Note also that this metric weights equally contributions of local and long-range connections.

Network Analysis

Two separate methods were used to further explore the networks associated with the identified hubs – one method that constructed functional connectivity maps for each candidate hub and a second method that formally quantified the betweenness centrality for all regions linked to the hubs. To generate connectivity maps, regions were constructed around the hubs from Data Set 1 and maps of functional connectivity constructed for Data Set 2. Regions were defined as 5-mm radius spheres centered on the peak coordinates of the hubs. These regions were used as seed regions for standard fcMRI analysis (e.g., Vincent et al., 2006; 2008; Kahn et al., 2008). Maps for different hub regions were constructed separately and compared.

To formally quantify the extent to which candidate hubs acted as connectors within the larger network, network-analytic tools were applied to (1) graph the network and (2) determine the betweenness centrality of each region in the network (Freeman 1977, 1978). The graph was built using Pajek software (De Nooy et al., 2005) and represented the relationships among regions using the Kamada-Kawai graphing algorithm (Kamada and Kawai, 1989). The Kamada-Kawai algorithm is a force layout method based on the energy minimization of the network that places connected nodes closer to one another, whereas disconnected nodes are placed farther apart. This algorithm, taking into account the geodesics between nodes, iteratively adjusts the positions and forces of nodes to reduce the total energy of the system to a minimum.

Next we computed a measure of betweenness centrality. Betweenness centrality of a vertex (brain region in this instance) is defined as the proportion of all geodesics between pairs of other vertices that include the vertex under study, where geodesics are defined as the shortest path between a pair of vertices, formally expressed as:


where gij is the number of geodesic paths between i and j, and giaj is the number of these geodesics that pass through a. Thus, betweenness centrality measures how often nodes occur on the shortest paths between other nodes. We visually represented betweenness centrality by plotting regions with higher values as larger circles.

Comparison of Locations of Hubs to Aβ Deposition in Early-Stage Alzheimer’s Disease

Regions of high rest-state activity and metabolism have been associated with Aβ deposition as measured via radiolabeled ligands. In order to compare the anatomic locations of identified hubs to the distribution of Aβ accumulation, we constructed a map from participants enrolled as part of ongoing Aβ imaging studies at MGH (e.g., Bacskai et al., 2007; Johnson et al., 2007; Gomperts et al., 2008). Participant demographics are shown in Table 2 and include the final set of individuals analyzed in the present report. The map was generated to be in alignment with the fcMRI data thus allowing formal, quantitative comparison between the two data types.

We used PET imaging procedures employing Pittsburgh Compound B (PiB), a ligand that selectively binds Aβ deposits. Procedures for PiB-PET imaging have been described previously (Mathis et al., 2003; Klunk et al., 2004; Bacskai et al., 2007; Johnson et al., 2007). Briefly, participants were imaged on a Siemens/CTI ECAT HR+ scanner (3D mode, 63 image planes; 15.2 cm axial field of view; 5.6 mm transaxial resolution and 2.4 mm slice interval). Movement was minimized with a thermoplastic facemask. Following the acquisition of a transmission scan, 9 to 14 mCi of 11C-PiB was injected as a bolus and 60 min of dynamic scans acquired. PET data were reconstructed using a 10-mm Gaussian smoothing kernel with ordered set expectation maximization and corrected for attenuation. PiB retention was calculated using the Logan graphical analysis method (Logan et al., 1990; 1996) using cerebellar cortex as the reference tissue. PiB retention was expressed as the distribution volume ratio (DVR) over the 40–60 min interval as in previous PET studies yielding a parametric image of DVR (e.g., Lopresti et al., 2005; Mintun et al., 2006; Johnson et al., 2007).

To yield group-level maps, each participant’s PiB-PET dataset was spatially normalized to the MNI atlas space (SPM2, Wellcome Department of Cognitive Neurology, London, UK) to yield a volume with 2-mm cubic voxels matching that of the fcMRI analysis. The atlas-transformed maps were then averaged within each of the AD and nondemented control groups. As a final step, a quantitative map proportionate to Aβ deposition was produced by subtracting the mean map of the PiB-negative nondemented control group from the mean map of the AD group. We eliminated PiB-positive nondemented control participants to allow for better visualization of the distribution of Aβ deposition in the AD group (see Buckner et al., 2005; Mintun et al., 2006; Gomperts et al., 2008). The 29 nondemented control participants were all PiB-negative.


The Cerebral Cortex Contains Hubs of High Functional Connectivity

fMRI Data Sets 1 and 2 yielded a highly consistent pattern of cortical hubs in normal, young adults (Figure 2; Table 3). The correlation between the two data sets was extremely high (r = 0.93). Figure 3 shows the map of cortical hubs using all 48 participants combined from Data Sets 1 and 2. For comparison, the Supplementary Materials display the map at several levels of threshold to illustrate that the topography of cortical hubs is qualitatively consistent across thresholds.

Figure 2
Cortical hubs are present and reliable
Figure 3
Cortical hubs are associated with multiple distinct networks
Table 3
Cortical hubs estimated from Data Set 1.

Hubs included mainly heteromodal areas of association cortex and generally spared areas within primary sensory and motor systems, consistent with Achard et al. (2006). The pattern of hubs is reminiscent of the anatomy of the default network as defined by task-induced deactivation (Shulman et al., 1997; Mazoyer et al., 2001) and functional connectivity (Greicius et al., 2003; 2004; Fransson, 2005; Fox et al., 2005; see Raichle et al., 2001 and Buckner et al., 2008 for reviews). The Supplementary Materials illustrate the overlap between the hub map of degree connectivity and the default network. The peak locations of the largest 10 hubs from Data Set 1 are listed in Table 3. The peaks were used to define a priori seed regions to further interrogate whether the hubs were components of the same, overlapping, or distinct networks.

Cortical Hubs Are Mostly (But Not Always) Components of the Same Core Network

5-mm radius spherical regions were defined around each of the ten most prominent hubs in Data Set 1 (Table 3). Maps of functional connectivity for each of the regions were then constructed for Data Set 2 allowing for an unbiased estimate of the hubs’ functional connectivity. Maps in Figure 3 illustrate the two main results of this analysis.

First, prominent hubs sometimes involved non-overlapping brain systems. For example, the network correlated with the hub in the posterior cingulate/precuneus (Table 3 Location 6; Figure 3A) minimally overlapped the network associated with the hub located in supramarginal gyrus (Table 3 Location 7; Figure 3C). As another example, the network associated with middle frontal gyrus (Table 3 Location 5; Figure 3B) resembles closely a system that has been provisionally labeled the frontoparietal control system (Vincent et al., 2008). This network spares the posterior cingulate and precuneus. The observation that prominent hubs can show non-overlapping functional connectivity is consistent with the possibility that the cortex contains multiple hubs that interact with distinct brain systems. In terms of network analysis, these distinct groupings may reflect separate ‘communities’ (Girvan and Newman, 2002) or ‘modules’ (Guimerá et al., 2007). What is clear from this analysis is that the hubs do not belong to a homogeneous network.

Second, despite several clear examples of non-overlap, there was a high degree of convergence across the networks associated with the hubs. Most hubs showed partial overlap with a core network that included the posterior cingulate/precuneus as would be predicted based on recent analyses of anatomic (Hagmann et al., 2008; Gong et al., 2008; Greicius et al., 2008) and functional (Buckner et al., 2008; Fransson and Marrelec, 2008) connectivity. The overlap was substantial in some cases. For example, the network associated with medial prefrontal cortex (Table 3 Location 3; Figure 3D) was nearly identical to that associated with posterior cingulate/precuneus (Figure 3D). Thus, many of the hubs are likely components of the same functionally integrated core system (see Hagmann et al., 2008; Buckner et al., 2008 for similar discussion).

To quantify the above analyses in an unbiased manner, we constructed a graphical depiction of the functional connectivity strengths between all regions associated with the top 10 hubs in the cerebral cortex. To do this we first identified all locations of correlated peaks in each of the 10 maps corresponding to the hubs in Data Set 1. Peaks were included if they showed strong correlation with the hub region (r > 0.25; see Supplementary Figure 1 regarding choice of threshold). A total of 94 peaks were identified. 5-mm radius spherical regions were constructed centered on each of these peaks (Figure 4A). The correlation strength was then determined between each pair of regions in the n × n matrix in the independent Data Set 2. This matrix was used to (1) construct a graphical representation of the regions and (2) compute a formal estimate of betweenness centrality for each of the 94 regions. 2,533 (25.5%) of the possible 8,836 connections (edges) reached the r > 0.25 threshold suggesting a relatively dense network. Results of the analysis are displayed in Figure 4B.

Figure 4
Network analysis of cortical hubs

Consistent with the seed-based correlation maps, there was a tendency to converge on a set of core hubs (Figure 4B, network I). The five hubs with the largest circles, reflecting high betweenness centrality, are displayed in blue. Figure 4C shows that these five core hubs are located within regions previously described as being components of the ‘default network’ (Gusnard and Raichle, 2001; Buckner et al., 2008; see also the Supplementary Materials). Also consistent with the seed-based analyses, a cluster of nodes were isolated from the principal network even though the originating candidate hub was derived from a region showing high connectivity (Figure 4B, network II). Thus, hubs of high connectivity across the cortex are not always associated within the same interconnected network. Rather, there is clear evidence for some degree of modularity. These isolated hubs represent the exception rather than the rule. The majority of hubs were linked to a single highly interconnected core network.

Cortical Hubs Are Present Across Passive Fixation and Active Task States

Given that the map of cortical hubs is quite similar to the default network, which has traditionally been defined as regions most active during passive resting states (e.g., Shulman et al., 1997; Mazoyer et al., 2001; see Supplementary Materials), it is important to ask whether the observed map is dependent on the task performed during data acquisition. To this point, all of the analyzed data were collected while individuals fixated on a cross-hair – a passive task that freely allows mindwandering and other forms of spontaneous cognition (Andreasen et al., 1995; Binder et al., 1999). One possibility is that the map of hubs captures transiently functionally-coupled regions, as might occur if the functional correlations are predominantly driven by spontaneous cognitive processes linked to the passive task state. Within this possibility, during an active task, a distinct network of hubs might emerge (e.g., the task positive network of Fox et al., 2005; see also Fransson, 2005). An alternative possibility is that the hubs reflect a stable property of cortical architecture that arises because of mono- and polysynaptic connectivity. Within this alternative possibility, the same hubs would be expected to be present all of the time, independent of task state, even when an active task is being performed.

To explore whether cortical hubs represent a stable property of cortex, we conducted the same analyses as applied previously but this time to data collected during the continuous performance of a demanding semantic classification task (abstract/concrete visual word classification). We choose abstract/concrete classification because it represents a prototypical externally-driven visual task that shows strong task-induced deactivation of the default network in traditional task-based analyses. The task was self-paced to further minimize cognitive downtime (D’Esposito et al., 1997). The participants performed well, classifying 91.4% of words correctly with a mean response time of 967 msec. As expected from prior studies (Fransson, 2006; Shannon et al., 2006), task performance showed an overall effect on functional connectivity with a significant reduction in the number of strongly correlated voxels (p < .001). The open question is whether task performance changes the topography of hubs. Figures 5 and and66 reveal the results.

Figure 5
The locations are cortical hubs are present across task states
Figure 6
Direct comparison of cortical hubs across task states

Two results emerged. First, the overall topography of hubs was similar between fixation and continuous task performance. The hubs remained in regions of the default network even during task performance. Note that the threshold of the map for continuous task performance is lowered to accommodate the overall reduction in functional connectivity strength. Second, in additional to the preservation of much of the topography, there were clear differences in the task data. Of note, regions of prefrontal and temporal cortex that have previously been identified as important contributors to the task (e.g., Demb et al., 1995; Buckner et al., 2000) showed increased degree connectivity. Nonetheless, the heightened activity in the hub regions is constant. Thus, task modulation, as observed here and prior task-based analyses, appears to emerge in addition to a stable topography of hubs that persists across passive and active task states. Figure 6 shows the correlation of the two maps of degree (passive visual fixation versus continuous task performance). They were highly correlated (r = 0.78).

Consensus Estimate of the Locations of Cortical Hubs

The analyses above demonstrated a reliable topography of hubs within the cerebral cortex that is present across passive visual fixation and active task performance. To provide our best estimate of the locations of hubs, we generated a consensus image that included all available participants with fixation data and the same acquisition voxel format (N=127). These included Data Sets 1,2 and 3 as well as 67 additional participants where two fixation runs were available. Figure 7 shows this final consensus image of cortical hubs. Atlas coordinates of hub peaks are listed in Table 4. The image volume can be obtained from the authors upon request.

Figure 7
A consensus estimate of cortical hubs from 127 participants
Table 4
Cortical hubs estimated from the composite data set including 127 participants.

Aβ Deposition in Alzheimer’s Disease Occurs Preferentially in the Locations of Cortical Hubs

Activity- and/or metabolic properties in certain cortical regions may be conducive to Aβ accumulation (Buckner et al., 2005; Cirrito et al., 2005). Given this possibility, it is reasonable to consider that the architecture of cortical hubs may participate in this process. Cortical hubs are potential waystations of information processing and heightened activity and/or metabolism. As can be appreciated visually, the consensus estimate of cortical hubs in Figure 7 resembles the pattern of Aβ deposition in AD as measured in vivo using PET (Klunk et al., 2004).

To formally explore the relationship between cortical hubs and Aβ accumulation in AD, the consensus estimate was directly compared to the estimate of Aβ deposition. Two separate analyses were performed to make the comparison. First, the maps were directly compared to visualize overlap. As Figures 7 and and88 reveal, the overlap is striking. Next, to quantify the overlap, the values of all voxels within the brain (without use of any threshold) were correlated for each of the two measures (the cortical hub map and the PiB binding map). Figure 9 shows the results. The correlation was strong (r = 0.68).

Figure 8
The pattern of Aβ deposition in Alzheimer’s disease
Figure 9
Direct comparison of cortical hubs and Aβ deposition

Of note, the relationship was not carried only by extreme values as relationship is clearly present when the values in the lower or upper quartile of each measure are not considered. This suggests a parametric relationship – the greater the level of functional connectivity across the brain, the greater the level of Aβ deposition in AD. As a final analysis, the map of hubs from the continuous task data from Data Set 3 was correlated with the PiB binding map. The correlation was again strong (r = 0.58). While this result is expected based on the findings presented in Figure 5 and and6,6, it establishes that the regions of high functional connectivity associate with Aβ deposition independent of task state, suggesting a mechanism for why these particular regions are vulnerable in AD without reference to task-dependent processes (e.g., Buckner et al., 2008). We will return to this important point in the discussion.


An emerging feature of connectional architecture is that certain areas act as waystations for information processing connecting otherwise segregated brain systems (Sporns et al., 2000; 2004; 2007; Achard et al., 2006; Hagmann et al., 2008; Gong et al., in press; Salvador et al., 2008). These areas are called hubs. Here we employed a computationally-efficient approach to map the topography of hubs across the entire cortex in a large number of participants. Results revealed a set of cortical hubs that persisted across distinct participant groups and task states. Moreover, the locations of most, but not all, hubs were within regions of heteromodal association cortex that are components of the default network. Below we discuss the implications of these intriguing results as well as the observation that cortical hubs correlate with regions of vulnerability in AD.

Hubs are Present Throughout Heteromodal Regions of Cortex

Building upon the work of earlier anatomists (Pandya and Kuypers, 1969; Jones and Powell, 1970), Mesulam (1998) drew attention to the importance of heteromodal regions of cortex that connect diverse brain systems. Our results, along with recent work (Achard et al., 2006; Salvador et al., 2008; Hagmann et al., 2008), provide an increasingly detailed map of the topography of cortical hubs. Figure 7 presents the reference map of cortical hubs generated from high-resolution (3-mm) fMRI data in 127 young adults. The map includes regions linked to multiple distinct systems including cortical components of the medial temporal lobe memory system (Vincent et al., 2006; Kahn et al., 2008) and the frontoparietal control system (Dosenbach et al., 2007; Vincent et al., 2008).

The posterior midline, in particular the posterior cingulate, is a nexus of cortical connectivity and has among the highest levels of both degree and betweenness centrality (see also Achard et al., 2006; Buckner et al., 2008; Hagmann et al., 2008. Greicius et al., 2009; Fransson and Marrelec, 2008). Medial prefrontal cortex was also identified as a hub. Unlike the posterior midline, medial prefrontal cortex did not manifest hub properties in the recent analysis of a structural core based on in vivo tract tracing (Hagmann et al., 2008). Hagmann et al. proposed that posterior cortex may serve as the anatomic hub that links anterior and posterior midline structures, an idea echoed by Grecius et al. (2009). This is an intriguing possibility that may clarify differences between structural and functional connectivity. The more extensive topography of hubs revealed by functional connectivity may comprise systems interconnected by polysynaptic circuitry.

Much of the analyses in the present paper and across the field which has tended recently to analyze functional connectivity during passive states could lead one to suspect that the specific cortical topography of hubs was dependent on a passive state. However, this was not found to be the case. While there were notable effects of task on functional connectivity, the topography of hubs persisted across passive and active task states (Figure 5). The present results suggest that the baseline of non-uniform activity that defines the hubs is likely derived from stable properties of the connectional architecture, a feature that is particularly relevant to metabolic properties that affect AD pathology as discussed later.

The Relation Between Cortical Hubs and the Default Network

Considerable recent attention has been given to the network of regions, referred to as the default network, that are active during passive task states relative to active states where externally-oriented tasks were being performed (Shulman et al., 1997; Mazoyer et al., 2001; for reviews see Raichle et al., 2001; Buckner et al., 2008). The consensus map of cortical hubs identified here included multiple regions that are components of the default network, although overlap is not complete (see Supplementary Materials).

One possibility is that the recurrence of the pattern we have come to know as the default network across all of these approaches reflects as overarching tendency of the human brain to augment integrative processing that depends on the cortical hubs identified here. Perhaps when focused attention is directed at a stimulus in the service of a constrained behavior, cortical hubs reduce their role in information processing. Such a situation is typical of cognitive neuroscience paradigms because tasks are commonly designed to evoke simple perception-action sequences. It is thus of interest that, while most tasks studied during the first two decades of human imaging research caused activity reductions in cortical hubs, recent studies that have become less constrained (focusing on social cognition, remembering, and navigation through virtual environments) often elicit relative activity increases in the default network (for reviews see Svoboda et al., 2006; Buckner and Carroll, 2007; Hassibis and Maguire, 2007; Buckner et al., 2008; Spreng et al., in press).

The Relation Between Cortical Hubs and Alzheimer’s Disease

A growing number of findings support a link between heteromodal association areas and cortical dysfunction in AD. These regions are preferentially vulnerable to Aβ deposition (Klunk et al., 2004; Buckner et al., 2005), atrophy (Scahill et al., 2002; Thompson et al., 2003; Buckner et al., 2005), and disruption of activity (Lustig et al., 2003; Grecius et al., 2004) and metabolism (Herholz, 1995; Minoshima et al., 1997). The present results, by showing that the cortical regions implicated in AD are connectional hubs that maintain their properties across task states, suggests a specific explanation for why these particular heteromodal association areas are vulnerable in AD.

Cortical hubs may be preferentially affected in AD because of their continuous high baseline activity and/or associated metabolism. While task states modify activity- and metabolism-profiles transiently, our findings reveal that the cortical hubs maintain their properties on a continuous basis. This differs from the notion that these regions are vulnerable only because of the tendency to use them in passive states (Buckner et al., 2008). Rather, the present data suggest that a stable property of the underlying network architecture and resulting activity fluctuations may convey vulnerability.

Amyloid precursor protein (APP) processing is activity dependent (Nitsch et al., 1993; Kamenetz et al., 2003; Cirrito et al., 2005, 2008; see also Selkoe, 2006). Using a transgenic mouse model, Holtzman, Cirrito and colleagues demonstrated that neuronal stimulation increases the abundance of Aβ in the extracellular space (Cirrito et al., 2005) and further that synaptic transmission increases APP endocytosis providing a candidate mechanism for the observed increase (Cirrito et al., 2008; see also Brody et al., 2008). It is therefore intriguing to speculate that the augmented functional activity, or activity fluctuations, associated with the connectional hubs may cause preferential accumulation of Aβ as a result of an activity-dependent mechanism.

Another link between activity and Aβ deposition comes from genetic and imaging studies of metabolism in humans. Genetic variation in glyceraldehydes-3-phosphate dehydrogenase (GAPDH) has been proposed as a risk factor for AD (Li et al., 2004). GAPDH, among its several biological roles, is a key enzyme in glycolytic metabolism. Coupled with the recent observation that glycolysis is preferentially high in regions associated with the default network (Mintun et al., 2006), it is also possible that connectional hubs may mediate their influence on Aβ deposition through glycolytic metabolism although a mechanism linking metabolism to Aβ increase has not been reported (see also Reiman et al., 2004).

Caveats and Unresolved Issues

There are several caveats that should be considered when interpreting the results and many questions remain unresolved. A major open question surrounds how to interpret functional connectivity as contrasted with structural connectivity. In many aspects, the network of hubs reported here is consistent with similar analyses based on structural data (e.g., Hagmann et al., 2008). Differences were also noted which may reflect the sensitivity of functional connectivity to polysynaptic projections or other unknown factors that influence functional coupling. It is also unclear to what degree the present hubs reflect activity fluctuations driven by local as contrast to distant projections. Animal models may help resolve these open questions (e.g., Vincent et al., 2007; Zhao et al., 2008).

A second limitation of the present approach is that it is descriptive and will require convergence with alternative methods to carry the research forward. Of particular importance will be to mechanistically explore the possibility that cortical hubs are conducive to Aβ accumulation. The present results suggest a testable set of hypotheses that can be summarized as follows: (1) the cortex contains regions of high activity and metabolism because they sit as nexuses of connectivity, (2) these regions maintain disproportionately high activity fluctuations most, if not all, of the time, and (3) the resulting heightened synaptic activity or associated cellular events are conducive to AD pathology.

These hypotheses revise earlier notions (e.g., Buckner et al., 2005; 2008) to propose that the regions of high activity and metabolism gain that property because of a stable feature of functional anatomy. A model system that can measure activity- and metabolic influences on AD pathology will be necessary to test these hypotheses fully (e.g., Cirrito et al., 2005; 2008). It should also be noted that we only explored Aβ deposition. The mechanism of toxicity in AD is not fully understood with pathology associated with tau likely making an important contribution to the disease (Lee, Goedert, and Trojenowski, 2001). Aβ may be a tangential correlate to the disease process (see St George-Hyslop and Morris, 2008 for discussion). To the degree that Aβ deposition marks where the pathological process is occurring, the present results suggest that activity- and/or metabolism associated with cortical hubs may accelerate the disease process.

Figure 1
Methods for identifying cortical hubs and networks

Supplementary Material



We thank Avi Snyder, Itamar Kahn, Brad Dickerson, and Marc Raichle for insightful comments and discussion. Yun-Ching Kao and Gagan Wig generously provided fMRI data. Larry Wald, Mary Foley, and the Athinoula A. Martinos Center MRI Core provided assistance with MRI imaging. The Molecular Imaging PET Core provided assistance with amyloid imaging. Bill Klunk and Chet Mathis provided assistance with PiB. Dorene Rentz and the Massachusetts ADRC provided assistance with characterization of the patient cohorts. This work was supported by the National Institute on Aging (AG-021910; AG-027435-S1) and the Howard Hughes Medical Institute.


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