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From:
Published online 2009 April 24. doi: 10.1186/1471-2164-10-184

Table 3

Lowest level GO terms that differed in QTL regions compared to the genome as a whole.

GO TermDescriptionPopulation FrequencyQTL/Populationp-value
Body Conformation
GO:0005254chloride channel activity0.001158.292.89E-04
GO:0030594neurotransmitter receptor activity0.001598.391.61E-05
GO:0048500signal recognition particle0.0004014.389.38E-04
GO:0004890GABA-A receptor activity0.0010211.251.09E-05
GO:0005230extracellular ligand-gated ion channel activity0.001599.581.35E-06
GO:0007214gamma-aminobutyric acid signaling pathway0.001118.632.38E-04
GO:0045202synapse0.007662.997.42E-04
GO:0045211postsynaptic membrane0.003944.362.22E-04
Carcass
GO:0050806positive regulation of synaptic transmission0.000313.382.00E-04
GO:0016600flotillin complex0.000313.382.00E-04
GO:0051059NF-kappaB binding0.000882.362.24E-04
GO:0006986response to unfolded protein0.002081.872.07E-04
Disease Resistance
GO:0046785microtubule polymerization0.0003515.505.33E-06
GO:0031116positive regulation of microtubule polymerization0.0003515.505.33E-06
GO:0009925basal plasma membrane0.0004913.531.64E-06
GO:0001937negative regulation of endothelial cell proliferation0.0004412.402.24E-05
GO:0007154cell communication0.003893.382.10E-04
GO:0042493response to drug0.001954.513.30E-04
GO:0004620phospholipase activity0.0002219.851.27E-05
GO:0019900kinase binding0.000589.541.03E-04
GO:0042470melanosome0.000499.026.90E-04
GO:0043434response to peptide hormone stimulus0.000846.537.63E-04
GO:0030659cytoplasmic vesicle membrane0.0003512.401.61E-04
GO:0016599caveola0.0005310.346.58E-05
GO:0019905syntaxin binding0.000589.541.03E-04
GO:0009395phospholipid catabolic process0.0003114.188.33E-05
GO:0050998nitric-oxide synthase binding0.0003515.505.33E-06
GO:0030321transepithelial chloride transport0.0003114.188.33E-05
GO:0042311vasodilation0.0004011.032.81E-04
GO:0019861flagellum0.001115.953.87E-04
GO:0007595lactation0.000846.537.63E-04
GO:0030317sperm motility0.000847.837.29E-05
Fat
GO:0051059NF-kappaB binding0.000882.331.06E-04
GO:0006986response to unfolded protein0.002081.851.01E-04
Growth
GO:0007586digestion0.001332.792.66E-04
Milk Protein
GO:0050785advanced glycation end-product receptor activity0.000274.679.67E-05
GO:0051059NF-kappaB binding0.000883.274.36E-06
GO:0006986response to unfolded protein0.002082.282.71E-05
GO:0007584response to nutrient0.002172.196.25E-05
Milk Yield
GO:0005922connexon complex0.000803.312.05E-04
GO:0030375thyroid hormone receptor coactivator activity0.000404.649.74E-05
GO:0042809vitamin D receptor binding0.000713.353.82E-04
GO:0042974retinoic acid receptor binding0.000315.963.71E-06
GO:0004886retinoid-X receptor activity0.000444.772.03E-05
Reproduction
GO:0005882intermediate filament0.001863.161.38E-06

The table describes fine detail GO terms found to be significantly over represented through hypergeometric analysis. In bold are the QTL categories from which the subsequent terms were found to be in abundance. Population frequency describes the frequency of the occurrence of the GO code genome wide. QTL/Population describes the ratio of the frequency of a GO code within a QTL region compared to the frequency of that GO code genome wide.