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From:
Published online 2009 February 24. doi: 10.1186/1471-2164-10-90

Table 2

List of gene set regulated by NGF in PC12 cells

GeneAccession no.Fold changeSubcellular location
Enzymes
 rat senescence marker protein 2A geneSMP2AX63410303Cytoplasm
 myosin, heavy chain 3MYH3K03468133Cytoplasm
 lecithin-cholesterol acyltransferaseLCATX54096101Extracellular Space
 UDP glucuronosyltransferase 2, polypeptide A1UGT2A1X5756563Cytoplasm
 contactin 4CNTN4U3537144Plasma Membrane
 phosphodiesterase 4B,PDE4BJ0456337Cytoplasm
 gulonolactone (L-) oxidaseGULOJ0353634Cytoplasm
 superoxide dismutase 3SOD3Z2472128Extracellular Space
 fibronectin 1FN1X1590628Plasma Membrane
 acetylcholinesteraseACHES5087928Plasma Membrane
 tryptophan hydroxylase 1TPH1X5350124Cytoplasm
 aldo-keto reductase family 1, member C1AKR1C1BAA9288310Cytoplasm
 guanine nucleotide binding protein, alpha zGNAZU774859Plasma Membrane
 aminoadipate aminotransferaseAADATZ501445Cytoplasm
 phospholipase D2PLD2D886724Cytoplasm
 N-deacetylase/N-sulfotransferase 1NDST1M920423Cytoplasm
 phosphate cytidylyltransferase 2PCYT2AF0805682Cytoplasm
 peptidylprolyl isomerase APPIAM19533-2Cytoplasm
 Rab geranylgeranyltransferase alphaRABGGTAL10415-2Unknown
 glutathione S-transferase A3GSTA3X78847-3Cytoplasm
 cytochrome P450, 4F4CYP4F4U39206-3Cytoplasm
 3-hydroxyanthranilate 3,4-dioxygenaseHAAOD28339-3Cytoplasm
 stearoyl-Coenzyme A desaturase 2SCD2AB032243-4Cytoplasm
 aldo-keto reductase family 1, member C3AKR1C3L32601-6Cytoplasm
 myxovirus resistance 2MX2X52711-10Nucleus
 serine dehydrataseSDSM38617-11Cytoplasm
G-protein coupled receptors
 calcitonin/calcitonin-related polypeptide alphaCALCAV01228136Plasma Membrane
 angiotensin II receptor 1AGTR1NM_00958550Plasma Membrane
 cholinergic receptor, muscarinic 3CHRM3AB017656-2Plasma Membrane
 parathyroid hormone receptor 1PTHR1M77184-3Plasma Membrane
Growth factors
 growth differentiation factor 15GDF15AJ011970131Extracellular Space
 transforming growth factor beta 1TGFB1X52498101Extracellular Space
 brain-derived neurotrophic factorBDNFX6710889Extracellular Space
 neuregulin 1NRG1U02324-3Extracellular Space
Ion channels
 calcium channel, voltage-dependent, beta 2CACNB2M8054590Plasma Membrane
 glutamate receptor, ionotropic, delta 2GRID2U0825678Plasma Membrane
 sodium channel, voltage-gated, type II, betaSCN2BU3714773Plasma Membrane
 potassium inwardly-rectifying channel J4KCNJ4X8763551Plasma Membrane
 solute carrier family 9 member 3SLC9A3M8530040Plasma Membrane
 purinergic receptor P2X, ligand-gated ion channel 2P2RX2Y1047513Plasma Membrane
 sodium channel, voltage-gated, type I, alphaSCN1AM2225312Plasma Membrane
 purinergic receptor P2X-like 1P2RXL1X92070-2Plasma Membrane
 gamma-aminobutyric acid A receptor gamma 2GABRG2X56313-19Plasma Membrane
Kinases
 G protein-coupled receptor kinase 5GRK5NM_005308131Plasma Membrane
 protein kinase, cGMP-dependent, type IIPRKG2Z3627668Cytoplasm
 mitogen-activated protein kinase kinase kinase kinase 1MAP4K1Y0901025Cytoplasm
 calcium/calmodulin-dependent serine protein kinaseCASKU471103Plasma Membrane
 discs, large homolog 1DLG1U149503Plasma Membrane
 phosphatidylinositol 4-kinase betaPI4KBD846673Cytoplasm
 discoidin domain receptor family member 1DDR1L26525-8Plasma Membrane
 non-metastatic cells 6NME6AF051943-14Extracellular Space
Peptidases
 carboxypeptidase A3CPA3U679145Extracellular Space
 ADAM metallopeptidase domain 17ADAM17AJ0126034Plasma Membrane
 Proteasome subunit alpha 1PSMA1M298593Cytoplasm
 protein disulfide isomerase family A member 3PDIA3D633782Cytoplasm
 caspase 1CASP1U14647-5Cytoplasm
Phosphatases
 dual specificity phosphatase 6DUSP6U4262753Cytoplasm
 protein phosphatase 1 subunit 1APPP1R1AAJ27659318Cytoplasm
 protein tyrosine phosphataser type 11PTPN11U09307-2Cytoplasm
Transcription regulators
 jun dimerization protein 2JDP2U53449-2Nucleus
 cAMP responsive element modulatorCREMZ15158-4Nucleus
Transmembrane receptors
 cholinergic receptor, nicotinic, beta 1CHRNB1X7483339Plasma Membrane
Transporters
 solute carrier family 1 member 1SLC1A1U21104238Plasma Membrane
 solute carrier family 22, member 3SLC22A3AF05528695Plasma Membrane
 gap junction protein, beta 2GJB2X5161555Plasma Membrane
 solute carrier family 1, member 3SLC1A3S591586Plasma Membrane
 solute carrier family 22, member 6SLC22A6AF0082216Plasma Membrane
 vacuolar protein sorting 33 homolog BVPS33BU352454Cytoplasm
 solute carrier family 30, member 1SLC30A1U171333Plasma Membrane
 syntaxin 4STX4L208212Plasma Membrane
 murinoglobulin 1MUG1J03552-2Extracellular Space
 ATPase, Cu++ transporting, beta polypeptideATP7BAF120492-6Cytoplasm
Others
 BCL2/adenovirus E1B interacting protein 3BNIP3AF243515216Cytoplasm
 natriuretic peptide precursor CNPPCD90219109Extracellular Space
 trans-golgi network protein 2TGOLN2X53565106Cytoplasm
 fibrillin 2FBN2L39790105Extracellular Space
 amyloid P component, serumAPCSM8317785Extracellular Space
 zinc finger, matrin type 3ZMAT3Y1314884Nucleus
 LIM and senescent cell antigen-like domains 1LIMS1AAA2008675Plasma Membrane
 CD44 moleculeCD44U9613861Plasma Membrane
 common salivary protein 1LOC171161U0096454Extracellular Space
 selectin PSELPL2308844Plasma Membrane
 collagen, type XI, alpha 1COL11A1AJ00539639Extracellular Space
 collagen, type XII, alpha 1COL12A1U5736228Extracellular Space
 nucleosome assembly protein 1-like 4NAP1L4AJ00219822Nucleus
 spermine binding proteinSBPJ0267520Unknown
 ribosomal protein L35RPL35M343316Cytoplasm
 connector enhancer of kinase suppressor of Ras 2CNKSR2AF1028545Plasma Membrane
 prolactin family 8, subfamily a, member 81PRL8A8AB0001074Extracellular Space
 extracellular proteinase inhibitorEXPIX133093Extracellular Space
 fibrinogen gamma chainFGGJ007353Extracellular Space
 smooth muscle alpha-actinACTA2X068012Unknown
 tropomyosin 1 alphaTPM1M341342Cytoplasm
 calcineurin binding protein 1CABIN1AF061947-2Nucleus
 crystallin, gamma ECRYGEJ00716-2Unknown
 follistatin-like 1FSTL1M91380-2Extracellular Space
 secreted phosphoprotein 2SPP2U19485-2Extracellular Space
 tachykinin, precursor 1TAC1M15191-2Extracellular Space
 myosin light chain 9MYL9S77900-3Cytoplasm
 ubiquitin BUBBX51703-3Cytoplasm
 golgin B1 proteinGOLGB1D25543-6Cytoplasm
 lysosomal-associated membrane protein 1LAMP1X14765-11Plasma Membrane

Gene description names, gene symbols are from IPA Tool; accession numbers are from GenBank