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Bioinformation. 2009; 3(6): 284–286.
Published online 2009 January 12.
PMCID: PMC2646865

Techniques for integrating ‐omics data

Abstract

The challenge for -omics research is to tackle the problem of fragmentation of knowledge by integrating several sources of heterogeneous information into a coherent entity. It is widely recognized that successful data integration is one of the keys to improve productivity for stored data. Through proper data integration tools and algorithms, researchers may correlate relationships that enable them to make better and faster decisions. The need for data integration is essential for present ‐omics community, because ‐omics data is currently spread world wide in wide variety of formats. These formats can be integrated and migrated across platforms through different techniques and one of the important techniques often used is XML. XML is used to provide a document markup language that is easier to learn, retrieve, store and transmit. It is semantically richer than HTML. Here, we describe bio warehousing, database federation, controlled vocabularies and highlighting the XML application to store, migrate and validate -omics data.

Keywords: data warehousing, bio warehouse, XML, genomics unified schema, database federation, controlled vocabularies

Articles from Bioinformation are provided here courtesy of Biomedical Informatics Publishing Group