SARS-CoV has at least seven structural proteins (S, 3a, E, M, 7a, 7b, and N) () (
Huang et al., 2006;
Schaecher and Pekosz, 2006;
Weiss and Navas-Martin, 2005). SARS-CoV S, 3a, E, and M proteins are viral membrane proteins with domains exposed to the external face of the virus (
Ito et al., 2005;
Shen et al., 2005) that, in principle, could be involved in protection by induction of neutralizing antibodies. It has been shown that proteins S and 3a induce
in vitro SARS-CoV neutralizing antibodies, with S protein being the main component of protective immunity (
Qiu et al., 2005;
Saif, 2004). Although strong immune responses are elicited against both S and N proteins (
Buchholz et al., 2004;
Subbarao et al., 2004;
Wang et al., 2005;
Zhu et al., 2004), passive transfer studies illustrate that only S-specific antibodies confer protection from SARS-CoV replication in the mouse model (
Bisht et al., 2004;
Subbarao et al., 2004).
The relevance of S protein in protection against SARS-CoV has been reinforced by the identification of neutralizing antibodies from convalescent patients. The majority of the coronavirus neutralizing epitopes are located within the spike protein of the virus (
Buchholz et al., 2004;
Hogan et al., 2004). Two domains are defined in the spike protein, the amino-terminus (S1) and the carboxy-terminus (S2) halves. In some coronaviruses, but apparently not in the case of SARS-CoV, the S protein is processed in these two halves (
Weiss and Navas-Martin, 2005;
Wong et al., 2004). Recent evidence has determined that SARS-CoV neutralization is sensitive to deglycosylation of the spike protein, suggesting that conformational epitopes are important in antibody recognition (
Song et al., 2004). The RBD located in the S1 subunit of S protein contains multiple conformational neutralizing epitopes. This suggests that recombinant proteins containing RBD, and vectors encoding the RBD sequence, can be used to develop safe and effective SARS vaccines (
Jiang et al., 2005). The continuous viral epitopes targeted by antibodies in plasma samples from convalescent SARS patients have been identified by biopanning with a M13 phage display dodecapeptide library (
Zhong et al., 2005). These epitopes converged to very short peptide fragments, one on each of the spike, nucleocapsid, 3a, 9b and nsp3 proteins. Immunoassays found that most of the patients (82%) that recovered from SARS developed antibodies to the epitope-rich region on the spike S2 domain, indicating that this domain also is an immunodominant site on the S protein. These S2-targeting antibodies were shown to effectively neutralize SARS-CoV. Moreover, it is possible that S2-specific antibodies provided protective immunity to help the patients recover from viral infection (
Zhong et al., 2005). In fact, among the rabbit antibodies elicited by different fragments covering the entire S protein expressed in
E. coli, some of them were specific for aa 1029–1192, which include the heptad-repeat sequence of the S2 domain that interacts to form S protein trimers, and had neutralizing activities, indicating that this region of the S protein also carries neutralizing epitopes.
SARS-CoV 3a protein consist of 274 amino acids, contains three putative transmembrane domains, and is expressed on the virus and cell surface (
Ito et al., 2005;
Tan et al., 2004b). The topology of 3a protein on the cell surface was experimentally determined; the first 34 aa, located before the first transmembrane domain, are facing the extracellular matrix (
Akerstrom et al., 2006), and its C-terminal, after the third transmembrane domain (aa 134–274), is facing the cytoplasm (
Tan et al., 2004b). Interestingly, in two separate cohorts of SARS patients, one from Taiwan (
Liu et al., 2004) and the other from Hong Kong (
Zhong et al., 2005), B cells recognizing the N-terminal region of 3a protein were isolated from patients. Moreover, significant proportion (40%) of the convalescent SARS patients examined in a dot blot assay using a synthetic peptide with a sequence corresponding to amino acids 12–27 of the N terminus of the protein were positive (
Zhong et al., 2005). In addition, it was recently reported that the N-terminal domain of 3a protein elicits strong and potentially protective humoral responses in infected patients (
Zhong et al., 2006). Accordingly, rabbit polyclonal antibodies raised against a synthetic peptide corresponding to aa 15–28 of 3a protein inhibit SARS-CoV propagation in Vero E6 cells, in contrast to antibodies specific for the C-terminal domain of the protein (
Akerstrom et al., 2006).
SARS-CoV E, M, and 7a proteins have shown low immunogenicity (
Tan et al., 2004a). Sera from three convalescent phase SARS patients do not recognize these proteins expressed in mammalian cells. Accordingly, SARS-CoV E protein peptides were not recognized by convalescent patient antisera using a protein microarray (
Qiu et al., 2005). In a study using rabbit antibodies to 13 recombinant fragments associated with SARS-CoV S, E, M, N, 3a, 3b, 6, 7a, and 9b proteins, strong neutralizing antibodies were only elicited by the S1 fragment (aa 241–591) of S protein (
Qiu et al., 2005). The incorrect folding of the proteins expressed in
E. coli could be responsible for the lack of detection of antibodies to other viral proteins, such as the 3a protein that is known to induce neutralizing antibodies (see above).
The M protein of transmissible gastroenteritis coronavirus (TGEV) is required for virus assembly and budding, and M protein specific antibodies significantly, but weakly, neutralize TGEV and mediate complement-dependent lysis of TGEV infected cells (
Delmas et al., 1986;
Risco et al., 1995;
Woods et al., 1987). Consistent with the TGEV data described above, it has been shown that SARS-CoV M protein also induced virus neutralizing antibodies in the absence of complement (
Buchholz et al., 2004). In addition, a mixture of S and M proteins showed a synergistic effect in the
in vitro synthesis of TGEV neutralizing antibodies by immune leukocytes (
Anton et al., 1995). In the case of SARS-CoV, immunization of hamsters with a parainfluenza virus vector has shown a differential role of S, M, E, or N proteins in protection (
Buchholz et al., 2004). Parainfluenza virus expressing S protein alone provided complete protection against SARS-CoV challenge in the lower respiratory tract and partial protection in the upper respiratory tract. This protection was slightly augmented by co-expression with M and E proteins (
Buchholz et al., 2004). Nevertheless, expression of M, E, or N proteins in the absence of S protein did not confer detectable protection. These results identify S as a main SARS-CoV neutralization and protective antigen among the structural proteins, and confers a limited role to SARS-CoV M protein in protection.
SARS-CoV N protein specific antibodies do not neutralize the virus
in vitro as it could be expected for an internal virus protein (
Pang et al., 2004). However, SARS-CoV N protein induces T-cell responses (
Gao et al., 2003). Accordingly, DNA immunization using SARS-CoV N gene induces potent Th1 polarized immune responses in mice, as well as specific antibodies in these animals. In fact, the highest levels of humoral response and T cell proliferation activity were induced by the N gene construct (
Jin et al., 2005). Analysis of the immune response to another coronavirus (TGEV), using an
in vitro antibody synthesis system, has shown that the optimum combination of viral proteins to stimulate the production of TGEV neutralizing antibodies
in vitro was a mixture of S and N proteins, or a combination of S protein oligomers (rosettes) and the N or N protein-derived peptides (
Anton et al., 1996;
Anton et al., 1995). These data, in principle, suggest that N protein could be used in a vaccine to promote the synthesis of S-specific neutralizing antibodies.
9b protein (98 aa) elicits antibodies in SARS-CoV patients, indicating that it is expressed in natural disease and that it is immunogenic (
Qiu et al., 2005;
Zhong et al., 2005). In fact 100% of convalescent phase patients sera were positive for 9b protein. Based on this data, it has been speculated that 9b protein could be structural (
Qiu et al., 2005). Nevertheless, the presence of 9b protein in SARS-CoV virions needs to be further proved.
In summary, with the available data, SARS-CoV proteins S and 3a elicit strong neutralizing antibody responses, whereas protein M only induces a reduced neutralizing humoral immune response. These antigens probably are relevant in the protection against SARS-CoV. In addition, other structural proteins (such as E, M, 7a, 7b, and N), and possibly protein 9b, could also play a role in protection.