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Thrombi, which are dissolved primarily by plasmin (EC 184.108.40.206.), contain up to millimolar concentrations of fatty acids and these are known to affect the action of the protease. In the present study the modulation of plasmin activity was characterized quantitatively in a continuous amidolytic assay based on synthetic plasmin substrate (Spectrozyme-PL). A novel numerical procedure was applied for identification of kinetic parameters and their confidence intervals, with Monte Carlo simulation of the reaction progress curves, providing adequate grounds for discrimination of different models of the enzyme action. All three fatty acids caused a 10–20-fold increase in the Michaelis constant on Spectrozyme-PL (baseline value 5.9 μm). The catalytic constant decreased from 5.8·s−1 to 2.4–2.8·s−1 in the presence of arachidonate and oleate, but increased to 14.8·s−1 in the presence of stearate, implying enhancement of plasmin activity at saturating substrate concentrations. However, based on the ratio of the catalytic and Michaelis constants, all three fatty acids acted as inhibitors of plasmin with various degrees of potency, showing concentration dependence in the range of 10–65 μm for oleate and arachidonate, and 115–230 μm for stearate. The reported effects of the three fatty acids require the presence of kringle 5 in the structure of the protease; miniplasmin (des-kringle 1-4 plasmin) is as sensitive to fatty acids as plasmin, whereas the activity of microplasmin (des-kringle 1-5 plasmin) is not affected.
The dissolution of intravascular thrombi is performed through the hydrolytic degradation of their fibrin matrix, a process catalyzed by the serine protease plasmin (EC 220.127.116.11.) . Arterial thrombi contain millimolar concentrations of phospholipids  and free fatty acids , which presumably originate from the highly compacted platelet content of the thrombi . These lipid constituents of thrombi profoundly modulate the fibrinolytic process [2,3,5–7]. In the few studies evaluating the effect of long-chain fatty acids on plasmin activity, both stimulation [5,7] and inhibition [3,6,7] have been reported, but the exact kinetic characteristics of plasmin in the presence of different fatty acids are still unexplored. It was therefore of interest to examine the effects of various potentially relevant fatty acids on plasmin. The three most abundant fatty acids in the structure of platelet membranes are arachidonic acid, stearic acid and oleic acid, representing 22.0, 19.5 and 18.8%, respectively, of the total fatty acid content of platelet phosphoglycerolipids . Accordingly, the present study was undertaken with these three fatty acids, expanding on our recent report  in which oleic acid was used to model the modulatory effects on the fibrinolytic system.
For determining the exact kinetic parameters of plasmin we chose a simple amidolytic assay based on a synthetic plasmin substrate (Spectrozyme-PL). When the plasmin amidolytic activity assay was performed in the presence of free oleic acid, some spurious effects were observed (Fig. 1). The optical phenomenon illustrated in Fig. 1A was not wavelength specific (because the same absorbance changes were seen at 340 nm; data not shown) and was not related to substrate breakdown (because plasmin released all the expected amount of p-nitroaniline after the incubation, as shown in the figure). Thus, these optical changes can be attributed to the formation of fatty acid micelles and their re-arrangement effected by Spectrozyme-PL. The results presented in Fig. 1B were observed if relatively weak plasmin activity (e.g. 1 nm plasmin) was superimposed on the initial phase of the optical changes in Fig. 1A and these can be misinterpreted as an activating effect of oleic acid. Therefore, in the present study we chose to work with higher plasmin concentrations (20 nm) and water-soluble sodium salts of the fatty acids, the turbidity effects of which are smaller compared with the free acid and are not influenced by the plasmin substrate.
Because, in most cases, the change in product concentration is not linear in the amidolytic assay performed with the required concentrations of plasmin and substrate, the initial reaction rate cannot be approximated reliably with a linear function, and the differential rate equation of the classic Michaelis–Menten framework cannot be applied directly for evaluating the experimental data. Accordingly, the progress curves of product generation in the course of the continuously monitored reactions were analysed as described in the Materials and methods. For the reactions in the absence of fatty acids, or in the presence of oleate and arachidonate, the experimental data were compatible with the simplest scheme of Model I (reversible substrate–enzyme interaction followed by irreversible breakdown of the enzyme–substrate complex to product and enzyme, as illustrated in Fig. 2A for oleate). In the presence of stearate, however, the discrepancy between the experimental and model curves was unacceptably large (Fig. 2B), suggesting a decrease in the enzyme activity during the assay. Consequently, the potential effects of the equilibrium between the product and the enzyme–product complex (Model II), as well as enzyme instability (Model III), are also considered, resulting in a decrease of the global-fit χ2 values (Fig. 3). Inspection of the residual plots  that were generated with the best estimates according to the three models evaluated, found systematic anomalies in Models I and II, which disappeared in Model III (Fig. 4). Selwyn's test  is a simple functional probe for enzyme stability in the course of activity assays. As illustrated in Fig. 5, this test indicated minimal loss of plasmin activity in the absence of fatty acids (Fig. 5A) compared with the markedly lower levels of end-stage product in the presence of stearate (Fig. 5B). In line with earlier observations , no autocleavage of plasmin was seen during the activity assay in the presence of enzyme substrate (Fig. 5, insets) precluding a proteolytic mechanism of the inhibition. The improved global χ2 value (Fig. 3), the homogeneous residual plot (Fig. 4) and the results of Selwyn's test (Fig. 5), justify the application of Model III as being the most adequate for the final evaluation of the kinetic parameters in the presence of stearate.
Following preliminary estimates of the Michaelis constant Km, a specific range of Spectrozyme-PL concentrations was assigned for each concentration of each fatty acid (lower limit below the estimated Km value and upper limit at least 5-fold higher than the Km estimate). The final best estimates of the catalytic constant (kp) and the Km, and their confidence intervals, are presented in Fig. 6. The optimization according to Model III yielded three additional fitted parameters [the product–enzyme association equilibrium constant (Ki), the decay rate constants for the enzyme-substrate complex (J2) and the enzyme product complex (J3)], which accounted for the progressive decrease of plasmin activity in the course of the assay in the presence of stearate (Table 1). The good fit of Model III progress curves to the experimental data supports the concept that in the presence of stearate the catalytic mechanism of plasmin is changed. The enzyme acquires higher affinity for some of the reaction products and, in addition, is less stable in complex with the product (the values of J2 assigned by the optimization procedure approach zero, thus ruling out potential instability of the enzyme–substrate complex). Additional experiments identified p-nitroaniline as the factor responsible for the premature decline of the enzyme activity in the course of the assay. The amidolytic assay was performed with plasmin pre-incubated with stearate and reaction products. If the pre-incubation was carried out with lysine, ε-aminocaproic acid or fibrinogen degradation products (mimicking the release of C-terminal lysine from Spectrozyme-PL) the time course of the amidolytic reaction was not affected, but if p-nitroaniline was used in the pre-incubation, the reaction started at the suppressed rate observed in the later stages of the amidolytic assay with stearate (Fig. 7). Thus, we concluded that the product inhibition was related only to the experimental setting of the amidolytic assay. Under such conditions the mathematical procedure operating with Ki and J3 is an indispensable tool in identification of the kp and Km values because it is able to eliminate the superimposed assay-dependent effects (on the Km and kp), which is not a trivial problem.
All three fatty acids examined caused a 10–20-fold increase in the Km of plasmin: oleate and arachidonate were efficient in the 10–65 μm concentration range, whereas stearate needed to be present at concentrations higher than 65 μm to achieve significant effects (Fig. 6). The two unsaturated fatty acids (oleate and arachidonate) resulted in a decrease, of up to two-fold, in the kp of plasmin. Considering the recently described reversible nature of the plasmin inhibition by oleic acid  and the changes of the kinetic parameters reported in the present study, oleate and arachidonate can be defined as mixed-type inhibitors of plasmin. The effect of stearate is rather unusual; the increase in the Km is coupled to higher values of the kp. At saturating concentrations of the substrate this effect is seen as apparent activation of plasmin in the amidolytic assay. However, if we use the kp/Km ratio as a measure of the overall impact of stearate, it should be classified as an inhibitor of plasmin, the potency of which is the lowest among the three fatty acids studied (Table 2).
In an attempt to identify the site of action of the fatty acids in the plasmin molecule, the amidolytic activity of two truncated plasmin variants was examined (Fig. 8). Miniplasmin (des-kringle 1-4 plasmin) contains the kringle 5 and the catalytic domain of plasmin, whereas microplasmin (des-kringle 1-5 plasmin) is composed of the catalytic domain only . At a saturating concentration of Spectrozyme-PL, all three fatty acids affected the activity of miniplasmin in the same manner as that of plasmin; apparent activation was seen with stearate and inhibition was seen with oleate and arachidonate (Fig. 8A). Microplasmin was not sensitive to the presence of fatty acids (Fig. 8B). These results preclude the catalytic domain as a target of the fatty acids and support the notion that interaction with kringle 5 is sufficient for their action. This finding is in agreement with an earlier report that oleic acid binds to kringle 5 with an affinity that is an order of magnitude higher than found for binding to the other kringles . Remarkably, the same authors show that oleic acid affects plasmin activity measured on a macromolecular substrate (prostromelysin-1) when applied in the same concentration range as reported in the present study for oleate and arachidonate (10–65 μm).
Our findings illustrate the general possibility for a modulator to change the kinetic parameters of an enzyme in an independent and controversial manner, so that the overall catalytic outcome may vary with the concentration of the substrate.
The approach used for the identification of kinetic parameters in this study exploited the advantages of progress curve evaluation in enzyme assays (a single reaction mixture yields 60 experimentally measured points for exactly the same enzyme and modulator concentrations) and further expanded the ideas for computer-intensive procedures in time-course simulations [12–14]. The global fit of the inverse functions for the integrated rate equations (Models I and II), or of the numerical solutions for the ordinary differential equations (Model III), was based on 420 experimental points (the means of 60 measured points for seven substrate concentrations) and its best estimates were further analyzed for better implementation of the experimental error. The application of error models in the Monte Carlo simulations has the advantage over the real error in that it reflects the trend in the error as a function of the product concentration generated and filters the random effects in individual samples. The best estimates of the kinetic parameters differed slightly from the experimental estimates (Fig. 6) because they are actually corrected for the effect of random outliers. The probability distribution of the parameters estimated using this robust evaluation procedure was essential for the identification of the statistical significance of the described effects. In conclusion, our study is an example of a careful kinetic analysis that can be a valuable tool in the coherent interpretation of apparently controversial modulator effects on enzyme activity.
Our present results were gained in a homogeneous plasmin assay system and thus their pathophysiological implications are not straightforward with respect to external, therapeutic fibrinolysis , when plasmin is generated by plasminogen activators on preformed fibrin and is exposed to a constant substrate concentration in a narrow lysis front on the surface of fibrin. Even if intravascular events initiate blood clotting and fibrin dissolution simultaneously in a process called intrinsic or internal fibrinolysis , plasmin is generated directly on the surface of fibrin fibers and so it is partially protected against inhibitors . Thus, the effects of fatty acids are restricted to a probably small fraction of plasmin molecules, which are detached from the fiber matrix. Despite this limitation, acting as mixed-type inhibitors, unsaturated fatty acids are still able to stabilize fibrin against plasmin, as previously reported for oleic acid , whereas through its discordant effects on the kp and Km values, stearate may promote fibrinogen depletion (as a result of higher plasmin activity at saturating substrate concentrations) and consequently shorten the life span of newly formed clots. The extrapolation of the reported in vitro effects to the in vivo setting of fibrin(ogen)olysis should await similarly rigorous characterization of plasmin activity on its natural substrates.
Sodium salt and free acid forms of oleic, stearic and arachidonic acids were purchased from Sigma-Aldrich Kft (Budapest, Hungary) and stock solutions (10 mm) were prepared in water (prewarmed to 70 °C) containing 50 μm butylated hydroxytoluene; these stock solutions were further diluted to the desired concentrations in 10 mm HEPES buffer (pH 7.4) containing 150 mm NaCl (all reactions were performed in this buffer system, the butylated hydroxytoluene after the final dilution in the reaction mixtures had no effect on the plasmin activity on its own). Miniplasmin and microplasmin were prepared and titrated according to our previously published procedures .
Plasmin (20 nm) was incubated with the sodium salts of fatty acids for 15 min at 37 °C. Then, 180 μL of this mixture was added to 20 μL of Spectrozyme-PL (H-D-norleucyl-hexahydrotyrosyl-lysine-p-nitroanilide; American Diagnostica, Stamford, CT, USA) at seven different concentrations ranging from 0.05 to 6 mm, yielding a final concentration S0j (j = 1,2,...,7) in the volume of the reaction mixtures. The light absorbance at 405 nm (A405), which reflects the release of p-nitroaniline, was measured continuously at ti (i = 1,2,...,60) time points in the course of 10 min at 37 °C; four parallel measurements were carried out for each S0j. The delay time between the initiation of the reaction and the first measurement was estimated with linear extrapolation from the initial six measured A405 values back to baseline absorbance, and an extinction coefficient for p-nitroaniline of 12.6 mm−1·cm−1 (determined from calibration in our assay system) was used to convert the measured absorbance values to product concentration (the notation indicates the p-nitroaniline concentration at time ti for the kth replica with S0j). Using Pmean,i,j (mean of ) and Pstd,i,j (standard deviation of ) three different approaches to model the behaviour of the experimental error along the progress curves were tested (uniform error, linear regression in logarithmic scale and regression according to a truncated square root function). Among them, the best fit was achieved with the linearized logarithmic model equation , where is the model error for the experiments with S0j. The parameters aj and bj were estimated by the ordinary least square method, and the experimental error models were used in evaluation of the kinetic parameters described below.
Three different models were tested for the reaction catalyzed by plasmin in the aforementioned assay. In the simplest case (Model I) the scheme is assumed, where E is plasmin, S is Spectrozyme-PL, P is p-nitroaniline, and k1, k2 and k-1 are the respective reaction rate constants. With the quasi-steady-state assumption the differential rate equation for this scheme is:
where Et0 and S0 are the initial concentrations of plasmin and its substrate, the Michaelis constant and the catalytic constant kp = k2 . Following integration it gives:
It is obvious that t in Eqn (2) is a strictly increasing function of P for any combination of Km and kp and therefore it has an inverse function P = PM(t, Km, kp, S0, Et0), which can be numerically estimated for all measured time points by a table look-up procedure. Thus, the linearized (according to the parameters) version of the integrated kinetic Eqn (2) was not used for regression purposes. With our approach we numerically built up the table of the inverse function for Eqn (2), which has no analytical form for P and in which t is the independent variable. Such multiple tables for different sets of parameters are used in the iterations, when the parameters are identified.
Because in the course of certain experiments the reaction rate declined faster than predicted by Model I, the more general scheme, was also tested (Model II), which accounts for the accumulation of the product and its complex with the enzyme. Assuming steady-state for both ES and EP complexes, the differential rate-equation is:
where , and the equilibrium association constant for the product . Although the Km and the kp derived for Model I and Model II have different algebraic form, their meaning within the context of the specific catalytic mechanism is identical; the Km is the substrate concentration at which the initial reaction rate is half of the maximal rate possible for given enzyme concentration, whereas kp has the properties of a first-order rate constant defining the capacity of the enzyme–substrate complex to form product . The integrated form of Eqn (3) is:
It can be proved that t in Eqn (4) is a strictly increasing function of P for any combination of Km, kp and Ki and therefore it has an inverse function P = PM(t, Km, kp, Ki, S0, Et0), which can be estimated numerically using the table look-up procedure described for Model I.
Because the product inhibition could not model the progress curve of the reaction in a satisfactory manner, the instability of the enzyme in the assay system was also considered according to the scheme suggested by Duggleby [13,14]
in which E′ indicates the inactive form of the enzyme, and J1, J2 and J3 are the rate constants for inactivation of the respective forms of the enzyme. In independent measurements with fatty acids we showed that the inactivation of free plasmin for the duration of the amidolytic assay was negligible (data not shown) and consequently the differential equation for the changes in enzyme concentration was derived only for J2 = 0, yielding the following system of ordinary differential equations (ODE):
The ODE system (5) was solved with initial conditions P(t=0) = 0 and E(t=0) = Et0. The first component of the solution P = PM(t, Km, kp, Ki, J2, J3, S0, Et0) represented the values for P in Model III. The integration of the ODE system (5) was performed by quasi-constant step-size implementation in terms of backward differences of the Klopfenstein–Shampine family of Numerical Differentiation Formulas of orders 1–5 and the initial steps were determined so that the solution would stay in its domain (0 ≤ P ≤ S0, 0 ≤ Et ≤ Et0) during the whole integration .
The model equations were fitted to thevalues with minimization of the square residues. The best experimental estimate of the model parameters was defined as the set of parameters for which the was rendered the minimal value is the value at ti and S0j of the functions with different sets of kinetic parameters as defined for Models I, II or III above and an identical Et0 value for all experiments). The minimization was performed using the Nelder–Mead simplex direct search method . Monte Carlo simulations  over the parameter logarithms were used to identify the confidence intervals of the parameters and their best estimates, as described previously . Each value for the simulated data points in the synthetic sample set was generated as a random entry, chosen from the normal distribution with mean Pmean,i,j and variance . All model simulation and optimization programs described above run under matlab 7.4 (The MathWorks Inc., Natick, MA, USA).
The technical assistance of Györgyi Oravecz is highly appreciated. The authors are grateful to Dr Colin Longstaff for helpful suggestions and critical review of the manuscript. This work was supported by the Wellcome Trust (083174/B/07/Z); Hungarian Scientific Research Fund (OTKA T031891), (OTKA K60123); Health Sciences Council (ETT 385/2006).