During the past two years, SEREX has been applied to a range of tumor types, including melanoma, renal cancer, astrocytoma, Hodgkin's disease (
4), esophageal cancer (
23), lung cancer (
24,
25), colon cancer (
26), gastric cancer, breast cancer, and prostate cancer. (A SEREX collaborative group has been established by the Ludwig Institute for Cancer Research involving investigators at the University of Saarland [Homburg, Germany]; Ludwig Institute Branches in New York, San Diego, CA, Melbourne [Australia], and London [UK, University College]; Aichi Cancer Center [Nagoya, Japan]; Krankenhaus Nordwest [Frankfurt, Germany]; Mie University School of Medicine [Mie, Japan] Moscow State University [Moscow, Russia], and the Institute of Molecular Biology and Genetics [Kyiv, Ukraine].) This survey has identified a large number of tumor antigens, >400, only a small fraction of which has been analyzed beyond the initial sequencing stage. Approximately one third of the SEREX-defined genes are novel.
Table lists the categories of tumor antigens that have been identified to date. The prime example of a mutational antigen is p53 isolated from a case of colon cancer, showing the potential of SEREX to identify etiologically relevant gene products in cancer. Three SEREX-defined antigens, which we have called 3p antigens, are encoded for by the p21 region on chromosome 3 (25 and Gordan, J.D., and M.J. Scanlan, unpublished data), a region known to be a hot spot of genetic abnormalities in many cancer types. Although mutation may likely be the underlying mechanism for the immunogenicity of these antigens, no mutations have been detected as yet in the coding sequences of the 3p antigens. The classic differentiation antigen tyrosinase has been detected in SEREX, and other examples, including a gastrointestinal tract–related differentiation antigen galectin 4, have been identified (
26). Several antigens coded for by amplified or overexpressed genes have also been identified, e.g., a new isoform of carbonic anhydrase in renal cancer (
4), aldolase A (
25) and eIF-4γ (
24) in lung cancer, and galectin 9 in Hodgkin's disease (
27), indicating that antigen overexpression can lead to immunogenicity, as it does in the case of HER2/neu (
28).
| Table 1Categories of SEREX-identified Human Tumor Antigens |
A fascinating category of tumor antigens, first discovered in the analysis of T cell–recognized epitopes, has been referred to as cancer-testis (CT) antigens (Table ). CT antigens are expressed by a variable proportion, ~10–40%, of a wide range of different human tumor types. In normal tissues, expression is highly restricted, with testis being the sole or predominant site of CT expression. The CT
+ cell type in the testis appears to be spermatogonia (
33). Three antigens in this category, MAGE (
3), BAGE (
34), and GAGE (
35), were initially identified as targets for cytotoxic T cells. HOM-MEL-40/SSX2, NY-ESO-1, SCP1, and CT7 were uncovered by SEREX analysis. In total, there are now seven genes or gene families belonging to the CT category, and four of them have been shown to be coded for by the X chromosome (MAGE, GAGE, SSX, and NY-ESO-1). Since no evidence has been obtained for mutation or other gene rearrangements involving CT-coding genes (the single exception to this is the characteristic t[X;18] translocation of synovial sarcoma that involves SSX genes (
36), but this translocation is not found in other SSX expressing cancers.), the likely explanation for expression of CT antigens in cancer cells is gene activation or derepression, and the well-known precedent for this in animal systems is the anomalous expression of TL antigens in the leukemias of TL
− mice (
37). De Smet et al. (
38) have correlated MAGE expression with the state of global hypomethylation generally associated with cancer and spermatogenesis. However, this cannot be the whole explanation because CT antigens are not coordinately expressed, and certain tumor types, such as colon cancer, rarely express known CT antigens. SCP1, the only CT antigen with a known function, is a synaptonemal complex protein involved in chromosome reduction during meiosis, and it is intriguing to speculate what role aberrant expression of a meiotic protein in a somatic cell plays in the origins and progression of cancer. CT7 is the most recent CT antigen defined by SEREX. (Because the function of only one CT antigen is known, a standardized nomenclature for these antigens has not been established. We have suggested that new CT antigens be numbered in the order of their discovery, e.g., CT7 for the seventh CT antigen or antigen family to be identified. In the case of CT antigens belonging to a multigene family, each member would be distinguished by a number following the CT designation, e.g., CT7.1, CT7.2, etc.) The CT7 gene encodes a protein with >1,000 amino acid residues, with the COOH terminus highly homologous to the MAGE-10, and other MAGE genes over a ~200 amino acid stretch. Sequences N-terminal to this segment, however, show no homology to the MAGE family. To find new members of the CT family, SEREX analysis is being extended to screening expression libraries derived from normal testis (
30,
32) and tumor cell lines expressing one or more of the known CT antigens.
| Table 2SEREX-identified CT Antigens |