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J Exp Med. 2003 December 15; 198(12): 1909–1922.
PMCID: PMC2194146

HIV-1 Viremia Prevents the Establishment of Interleukin 2–producing HIV-specific Memory CD4+ T Cells Endowed with Proliferative Capacity

Abstract

CD4+ T cell responses are associated with disease control in chronic viral infections. We analyzed human immunodeficiency virus (HIV)-specific responses in ten aviremic and eight viremic patients treated during primary HIV-1 infection and for up to 6 yr thereafter. Using a highly sensitive 5-(and-6)-carboxyfluorescein diacetate-succinimidyl ester–based proliferation assay, we observed that proliferative Gag and Nef peptide-specific CD4+ T cell responses were 30-fold higher in the aviremic patients. Two subsets of HIV-specific memory CD4+ T cells were identified in aviremic patients, CD45RA CCR7+ central memory cells (Tcm) producing exclusively interleukin (IL)-2, and CD45RA CCR7 effector memory cells (Tem) that produced both IL-2 and interferon (IFN)-γ. In contrast, in viremic, therapy-failing patients, we found significant frequencies of Tem that unexpectedly produced exclusively IFN-γ. Longitudinal analysis of HIV epitope–specific CD4+ T cells revealed that only cells that had the capacity to produce IL-2 persisted as long-term memory cells. In viremic patients the presence of IFN-γ–producing cells was restricted to periods of elevated viremia. These findings suggest that long-term CD4+ T cell memory depends on IL-2–producing CD4+ T cells and that IFN-γ only–producing cells are short lived. Our data favor a model whereby competent HIV-specific Tcm continuously arise in small numbers but under persistent antigenemia are rapidly induced to differentiate into IFN-γ only–producing cells that lack self-renewal capacity.

Keywords: T cell memory, T cell proliferation, primary HIV-1 infection, HAART

Introduction

Infection by HIV-1 inexorably leads to severe immunodeficiency caused mostly by the loss of CD4+ T cells (1, 2). The deletion of CD4+ T cells is thought to be a consequence of the cytopathic effect of HIV although several studies have highlighted the important contribution of hyperimmune activation to the loss of CD4+ T cells (3). Analyses of T cell dynamics during chronic HIV and simian immunodeficiency virus (SIV) infection using ex vivo staining with Ki67, as well as in vivo BrdU or [3H]glucose incorporation, have demonstrated the high turnover rate of CD4+ T cells in humans (4, 5) and in nonhuman primates (6, 7). Whether enhanced T cell turnover is the consequence of CD4 depletion or its cause has been debated. Recent analysis of the immune response in the natural hosts of SIV, the sooty mangabey, and African green monkey, suggest that the absence of disease progression in these species is causally related to their failure to develop a generalized state of immune activation and elevated T cell turnover despite high levels of SIV viremia (8). Moreover, in some patients infected with HIV-2, which is associated with a less aggressive clinical course, high levels of immune activation comparable to those seen in HIV-1 infection may also develop and are then associated with comparable levels of CD4 cell depletion (9).

In this report, we have investigated the impact of the constant activation and turnover of HIV-specific CD4+ memory cells in HIV-1–infected patients on their phenotype and function, both as a model and because of the potential implications for understanding the immunopathogenesis underlying disease progression. CD4+ T cells are involved in protection from many viral infections (10). They play a major role in the induction of the immune response through their capacity to produce IL-2, to activate APCs via CD40–CD40L interaction, and to provide help to responding CD8+ T cells (1114). In HIV-infected patients, Rosenberg et al. (15) demonstrated strong CD4+ T cell proliferative responses against the HIV-1 Gag protein in long-term nonprogressors and in early highly active antiretroviral therapy (HAART)-treated patients. The magnitude of HIV-specific proliferative response was inversely correlated to plasma viral load, suggesting that the absence of an HIV-specific proliferative response is due to the deletion of HIV-specific CD4+ T lymphocytes. Indeed, HIV-specific CD4+ T cells are the preferential targets of infection by HIV-1 (16). However, Pitcher et al. (17) showed that Gag-specific CD4+ T lymphocytes capable of producing IFN-γ were detectable in most HIV-infected patients including viremic individuals, whereas such cells were undetectable in patients treated during chronic infection. Recently, several studies have shown discrepancies between the frequencies of HIV-specific IFN-γ–producing CD4+ T cells and HIV-specific lymphoproliferation in viremic HIV-infected patients (1820), suggesting that the absence of HIV-specific CD4+ T cell proliferative responses is due to dysfunction of HIV-specific CD4+ T cells rather than their absolute loss. Whether this dysfunction is related to maturation/differentiation of HIV-specific CD4+ T cells or to other mechanisms is not known.

Memory CD4+ T cells have been subdivided into central (Tcm) and effector (Tem) memory based on the expression of CCR7, CD62L, and CD45RA, and on their ability to produce cytokines and proliferate. CD4+ Tcm were shown to produce exclusively IL-2 and have a high capacity to proliferate, whereas Tem produce mainly IFN-γ and have limited proliferative capacity (21). To determine the impact of HIV-1 infection on the persistence and maturation of the HIV-specific memory CD4+ T cell response, we monitored HIV epitope–specific CD4+ T cells using a 5-(and-6)-carboxyfluorescein diacetate-succinimidyl ester (CFSE)-based proliferation assay as well as by intracellular cytokine staining (ICS) in HAART-treated patients that had been infected from 1 to up to 6 yr and who were successful or not in controlling their viremia. We show that persistent HIV-1 generates a high frequency of IFN-γ+ HIV-specific CD4+ T cells, lowers the frequency of IL-2–producing cells, and interferes with the establishment and/or maintenance of long-lived memory.

Materials and Methods

Study Population.

All patients signed informed consent approved by the Royal Victoria Hospital review board. The aviremic and viremic patients were treated with HAART within the first 6 mo of infection. The approximate onset of HIV-1 infection was determined by clinical symptoms and the detuned assay (22). Aviremic patients (n = 10) maintained undetectable viral loads, measured using the Amplicor HIV-1 Monitor UltraSensitive Method (Roche) from the initiation of HAART and during up to 72 mo of follow-up. Viremic patients (n = 8) had several viral rebounds (median, 5; range, 4–7) due to interruption/failure of anti–HIV-1 drug treatment. The median CD4 T cell count for the aviremic patients was 671 cells/μl at the time of apheresis. The median viral load of the viremic patients was 45,295 copies/ml and the median CD4 T cell count 485 cells/μl. Patients' characteristics are described (see Table I).

Table I.
Patients' Characteristics

CD4+ T Cell Proliferation Assay.

Gag (HXB2) and Nef (BRU) 15-mer peptides were obtained from the National Institutes of Health (NIH) AIDS Research & Reference Reagent Program (Rockville, MD) and the Canvac Core Facility (Montréal, Canada), respectively. Estimated purity of the peptides was >90% as measured by HPLC and mass spectrometry. Individual peptides were diluted in DMSO (Sigma-Aldrich) at 100 mg/ml and stored at −80°C. PBMCs were isolated from peripheral blood or apheresis donor packs by sodium diatrizoate density centrifugation (Amersham Biosciences). Frozen samples were cryopreserved using patients' plasma supplemented with 10% DMSO. Cryopreserved samples were maintained in liquid nitrogen and thawed for use in the proliferation assay. 10–50 × 106 PBMCs were labeled with a predetermined concentration of CFSE (Molecular Probes). The final concentration of CFSE used for PBMC labeling varied between 0.7 and 1.5 μM. Cells were washed twice in PBS and resuspended in RPMI media supplemented with 10% human serum (Sigma-Aldrich). 106/ml CFSE-labeled PBMCs were incubated in 96–deep well plates (Nunc) in the presence of Gag or Nef peptide pools (2 ug/ml/peptide) or 10 μg/ml individual peptides. 1 μg/ml CMV lysate (Biowhittaker) or 50 ng/ml SEA (Toxin Technology) were used as positive controls. Cells were stained with anti-CD4 APC and anti-CD3 PE (Becton Dickinson) after 6 d of in vitro incubation at 37°C, 5% C02. A minimum of 3–5 × 105 events, gated on CD3+ CD4+ viable T lymphocytes, were collected on a FACSCalibur™ dual laser cytometer (Becton Dickinson) and analyzed using FlowJo® software (TreeStar).

Previous reports indicated that CD4+ T cells begin to divide after 36–48 h (23, 24) of stimulation with average doubling time of 18 ± 7.5 h (unpublished data). Based on these numbers, it is possible to estimate that between five to nine divisions occurred during 6 d of in vitro proliferation. Similar estimates of cell division numbers have been reported (2527). Indeed, by comparing baseline frequencies of CD4+ T cells producing IL-2 to the percentages of peptide-specific CFSElow CD4+ T cells in aviremic HIV-1–infected patients, we were able to estimate that seven to eight divisions of epitope-specific CD4+ T cells occur within the 6-d CFSE test. Therefore, the baseline frequency corresponding to 1% of CFSElow CD4+ T cells after 6 d would range between 0.007 to 0.003% of the total CD3+ CD4+ T cells.

ICS.

Frozen PBMCs were rapidly thawed in complete media and 106 PBMCs were distributed in 96–deep well plates and incubated at 37°C for 2 h before stimulation. PBMCs were stimulated with 10 μg/ml peptides, anti-CD28, and anti-CD49d (1 μg/ml; BD Biosciences) for 12 h. Golgi-stop (Becton Dickinson) was added after 2 h of stimulation. Cells were collected and stained with anti-CD4 PerCP (Becton Dickinson), anti–IFN-γ PE (BD Biosciences), anti–IL-2 FITC (BD Biosciences), and anti-CD69 APC (Becton Dickinson). The six color analysis was performed using the following antibodies: CD4-APC-Cy7 (DakoCytomation), biotinylated CCR7 (Becton Dickinson) followed by streptavidin PE-Cy7 (DakoCytomation), IL-2 PE (Becton Dickinson), IFN-γ APC (BD Biosciences), and CD69 FITC (BD Biosciences). A minimum of 1–3 × 105 events, gated on CD4+ lymphocytes, were collected on LSR dual laser cytometer (Becton Dickinson) and analyzed using FlowJo™ software (TreeStar).

Human Class II Molecular MHC Typing.

HLA typing was performed using conventional genotyping SSP-PCR low/high resolution kits (QIAamp Kit; QIAGEN). In brief, DNA was extracted from blood using the QIAamp 96 blood kit followed by an intermediate resolution SSOP-PCR typing and high resolution SSP-PCR subtyping.

Statistical Analysis.

The exact Mann-Whitney and Spearman correlation statistical tests were performed using Prism V2 software (GraphPad). Differences were considered statistically significant when P ≤ 0.05.

Results

High Proliferative Capacity of HIV-specific CD4+ T Cells in Aviremic Compared with Viremic Patients.

The overall frequency of HIV-specific CD4+ T cells decreases throughout HAART treatment to the point where these cells become undetectable by current assays (17, 2833). Previous reports have suggested that early treatment leads to the preservation of HIV-specific proliferative CD4+ T cell responses (15, 3436), although adequate characterization of the memory T cell compartment has not been addressed. To monitor HIV peptide–specific CD4+ T cell responses, we developed a highly sensitive proliferation assay based on the labeling of T cells with the cell tracking dye CFSE. To study the function and the maintenance of HIV-specific memory CD4+ T cells, we initially performed a cross-sectional study on patients who had been infected for up to 6 yr and who had been treated early after infection. Because the CD4 T cell count is usually low in untreated patients, proliferative CD4+ T cell responses were analyzed in aviremic HAART-successful and in viremic HAART-failing patients. Both groups have similar CD4 T cell count but differ primarily by the presence or absence of viral rebounds. The CD4 T cell analysis was performed after an average of 28 and 55.5 mo of HAART, respectively (Table I, Group 1 and Group 2). In aviremic patients, HIV-specific CD4+ T cell responses were analyzed at 48 (Table I, patients 11C, 12C, and 13C) and 60 (Table I, patient 12B) mo after HAART initiation. A matrix (37) of 170 overlapping peptides (15-mer with an 11–amino acid overlap) spanning the entire Gag (122 peptides) and Nef (48 peptides) proteins was generated. PBMCs from HAART-treated aviremic and viremic patients were stimulated with peptide pools (10–12 peptides/pool) and CD4+ T cell proliferation was assessed using the CFSE-based proliferation assay. Single Gag and Nef peptides able to induce the highest percentage of CFSElow CD4+ T cells were selected in every patient. Control experiments in uninfected individuals showed that these peptides did not induce >0.05% of CFSElow cells. Proliferative responses scoring >0.1% of CD3+ CD4+ CFSElow cells were considered positive. We observed major differences in the proliferative capacity of HIV-specific CD4+ T cells from viremic versus aviremic patients (Fig. 1) . For example, although CD4+ T cells from aviremic patients 12C, 12B, and 11C expanded extensively after stimulation with the G067 peptide (20, 5, and 6% CFSElow CD4+ T cells, respectively), PBMCs from viremic patients 111, 112, and 113 barely proliferated in response to this peptide (0.13, 0.12, and 0.26% CFSElow CD4+ T cells, respectively). Assuming that all HIV-specific T cell precursors undergo proliferation at similar rates, the percentages of CFSElow cells approximately reflect baseline frequencies of 0.0005, 0.0005, and 0.001% of G067 responding CD4+ T cells in viremic patients 111, 112, and 113 (Table III and refer to Materials and Methods), respectively, as compared with frequencies of 0.11, 0.05, and 0.07% in aviremic patients 12C, 12B, and 11C, respectively (Table II and refer to Materials and Methods). The reduction in CD4+ T cell proliferative responses in viremic patients is not due to differences in HLA-DR allelic polymorphism between aviremic and viremic patients because the G067 peptide binds 13 different HLA-DR alleles (38). The reduced proliferation of CD4+ T cells in viremic patients was also observed with other Gag peptides such as G054, G008, and G065 (0.23, 0.3, and 0.53%, respectively), whereas PBMCs from aviremic patients maintain the ability to proliferate in response to many Gag peptides such as G076 (8% in patient 12B) or G065 (5% in patients 12C and 11C). Similar results were obtained with Nef peptides with a significant proliferative capacity of CD4+ T cells in aviremic but not viremic patients (Tables II and III). The results were reproduced in additional seven aviremic and five viremic patients as indicated in Fig. 1 b. The median percentage of CFSElow CD4+ T cells in aviremic patients was 9.2% (n = 20; range, 6–20%), whereas the median response in viremic patients was 0.3% (n = 16; range, 0.2–0.5%). Our results indicate that the reduced proliferative response in viremic patients is neither restricted to a single peptide nor to a single HIV protein because reduced HIV-specific proliferative responses were detected with Gag- as well as Nef-derived peptides (Fig. 1 b and Table III). Overall, a 30-fold difference in the proliferative capacity of epitope-specific CD4+ T cells was observed between aviremic and viremic patients. Of note is the fact that the negative impact of HIV viremia on CD4+ T cell proliferation was observed only in HIV-specific T cell responses. Indeed, analysis of CMV- or SEA-specific responses in aviremic and viremic patients failed to show any statistical difference in the frequency of CFSElow cells (P = 0.1 and 0.6, respectively; Fig. 1 b).

Figure 1.
Ability of HIV-specific CD4+ T cells to proliferate in vitro. (a) Comparison between aviremic (12C, 12B, and 11C) and viremic (111, 112, and 113) patients for the ability of CD4+ T cells to proliferate in vitro. PBMCs from aviremic and viremic patients ...
Table II.
Proliferation and Cytokine Production by HIV Peptide–specific CD4+ T Cells in Aviremic Patients
Table III.
Proliferation and Cytokine Production by HIV Peptide–specific CD4+ T Cells in Viremic Patients

Altogether, these results demonstrate that HIV-specific CD4+ T cell proliferative response is impaired in patients who are viremic. This is either due to the absence of HIV-specific CD4+ T cells, to the virus-mediated killing of the proliferating cells during the in vitro stimulation, or to intrinsic proliferative defect of these cells. Moreover, the results clearly indicate that CD4+ T cell proliferative responses are maintained in HAART-treated patients even 5 yr after treatment initiation, suggesting that the control of viremia allows the persistence of a pool of long-term HIV-specific CD4+ memory T cells.

High Frequency of HIV-specific CD4+ T Cells Producing IFN-γ in Viremic Patients.

Next, we investigated the cytokine secretion potential of HIV-specific CD4+ T cells in aviremic and viremic patients. As shown in Fig. 2 a, stimulation of PBMCs from aviremic patient 12C with 2 Gag peptides induced the production of both IL-2 (0.1 and 0.07%) and IFN-γ (0.05 and 0.03%). In contrast, stimulation of PBMCs from viremic patient 111 with the same peptides led to the exclusive production of IFN-γ (0.2 and 0.4%; Fig. 2 b). Analysis of intracellular IL-2 and IFN-γ production in ten aviremic and eight viremic patients demonstrates that HIV-specific CD4+ T cells secreting IL-2 are only detected in aviremic patients (median, 0.05%; range, 0.1–0.04; Fig. 2 c and Table II). HIV-specific responses in all aviremic patients included CD4+ T cells producing either IL-2 alone (median, 0.03%; range, 0.02–0.05) or both IL-2 and IFN-γ (median, 0.03%; range, 0.02–0.05; Table II). Interestingly, we could not detect a subset of cells producing only IFN-γ in most of the aviremic patients (Table II). This is in sharp contrast to the cytokine production capacity of CD4+ T cells from viremic patients that secrete exclusively IFN-γ (median, 0.2%; range, 0.1–0.4; Fig. 2 C and Table III).

Figure 2.
Four-parameter FACS® analysis of epitope-specific CD4+ T cells in aviremic and viremic patients. (a and b) Detection of epitope-specific CD4+ T cells by intracellular IL-2 and IFN-γ staining of PBMCs from aviremic (12C) and viremic (111) ...

These data demonstrate that the reduction of proliferative responses in viremic patients is not due to the absence of HIV-specific CD4+ T cells because high frequencies of IFN-γ–producing CD4+ T cells were detected by ICS after stimulation with HIV peptides. Our results also show that upon viral control, HIV-specific IFN-γ+ IL-2 CD4+ T cells are not detected in aviremic HAART-successful patients. Rather, cells producing IL-2 or both IL-2 and IFN-γ are detected even several years after the infection.

IL-2 Restores the Proliferation of HIV-specific IFN-γ+ IL-2 CD4+ T Cells.

The results illustrated in Fig. 2 clearly show the significant differences in cytokine production patterns observed between viremic and aviremic patients. Taken together these results and those illustrated in Fig. 1 suggest that the inability to produce IL-2 might be responsible for the absence of proliferative responses in viremic patients. Supporting this hypothesis, a strong positive correlation was observed (P < 0.0001, R = 0.81, n = 20) between the baseline frequencies of Gag and Nef peptide–specific CD4+ T cells, as measured by the ability to produce IL-2 and the percentage of CFSElow epitope–specific CD4+ T cells in aviremic patients after in vitro stimulation (Fig. 3 a). Because HIV-specific CD4+ T cells in aviremic patients produce both IL-2 and IFN-γ when stimulated with the indicated peptides, a positive correlation (P < 0.0001, R = 0.86) was also generated when plotting together frequencies of IFN-γ–secreting CD4+ T cells and of CFSElow cells generated after in vitro peptide stimulations (Fig. 3 b). This is in contrast to IFN-γ+ CD4+ T cells in viremic patients where no correlation was found (P = 0.4) between the frequency of HIV-specific IFN-γ–producing cells at baseline and the proliferative response after 6 d. The absence of correlation is most likely due to lack of IL-2 production by HIV-specific CD4+ T cells from viremic patients.

Figure 3.Figure 3.
Correlation between the frequency of HIV-1 epitope-specific CD4+ T cells monitored by IL-2 (○) or IFN-γ cytokine (•) deleted after 12 h and the frequency of CFSElow CD4+ T cells after 6-d in vitro proliferation in aviremic (a and ...

To test if the presence of IL-2 could restore the proliferation of these cells, we stimulated CD4+ T cells from viremic patients (111, 112, and 113) with a pool of peptides containing the G067 peptide, which gave strong IFN-γ responses in these three patients (Table III), in the presence of exogenous IL-2. As illustrated in Fig. 3 d, the addition of IL-2 during the in vitro peptide stimulation dramatically increased the fraction of proliferating cells. Comparison of the percentage of CFSElow cells induced by IL-2 alone versus peptides plus IL-2 demonstrated that although IL-2 alone induced some CD4+ T cell proliferation nonspecifically, it definitely restored the proliferation of peptide-specific CD4+ T cells from viremic patients. This experiment strongly suggests that the impaired proliferation of CD4+ T cells from viremic patients is not caused by a virus-mediated destruction of proliferating cells.

These results indicate that HIV-specific IL-2 and IL-2/IFN-γ CD4+ T cells have the capacity to proliferate in response to antigen, whereas IFN-γ+ IL-2 HIV-specific CD4+ T cells, found mostly in viremic patients, have a diminished ability to divide that can be restored by exogenous IL-2. Collectively, the data presented in Figs. 1, ,2,2, and and33 demonstrate that the lack of HIV-specific CD4+ T cell proliferation in viremic patients is caused neither by the absence of HIV-specific cells nor by their virus-mediated killing, but rather by their inability to produce IL-2.

HIV-specific CD4+ T Cells with a Central Memory Phenotype Are Detected Exclusively in Aviremic Patients.

Next, we investigated to what extent the difference in the cytokine expression profile of CD4+ T cells from viremic and aviremic patients could be explained by the fact that these cells are at distinct stages of effector/memory differentiation. It is now well established that expression of CD45RA and CCR7 defines T cell subsets endowed with distinct proliferative capacities and cytokine production profiles (21, 39). To assess the impact of viremia on the differentiation state of HIV-specific memory CD4+ T cells, we analyzed their phenotype in three aviremic (12C, 12B, and 11C) and three viremic (111, 112, and 113) patients after in vitro stimulation with the G067 peptide. Frequencies of CD69+ IL-2+ or CD69+ IFN-γ+ CD4+ T cells were quantified in the different subsets using a six color flow cytometry assay. Fig. 4 a shows a representative distribution of IL-2+ and IFN-γ+ CD4+ T cells among the CD4+ T cell subsets from an aviremic (12C) and a viremic (111) patient. Analysis of cytokine production in patient 12C showed that IL-2–producing cells are found in both the CD45RA CCR7+ (0.06%) and CD45RA CCR7 (0.1%) subsets. In the viremic patient 111, none of the memory T cell subsets was able to produce IL-2 upon peptide stimulation (as expected from results presented in Figs. 1 and and2),2), whereas the majority of IFN-γ–secreting cells had an effector memory (CD45RA CCR7) phenotype (0.2%). These results were reproduced in an additional two aviremic (12B and 11C) and two viremic patients (112 and 113). Similar results were also obtained with other HIV peptides (G065, G076, G054, and G008; not depicted).

Figure 4.Figure 4.
Six color FACS® analysis of HIV-specific CD4+ T cells in aviremic and viremic patients. (a) Representative pseudo color plots of phenotypic analysis of G067-specific CD4+ T cells in PBMCs from aviremic (12C) and viremic (111) patients. Numbers ...

These results do not exclude an overlap in the differentiation state of IL-2–producing and nonproducing cells found in the aviremic and viremic patients, respectively. One possibility is that the latter belong to the Tem subset but that their ability to produce IL-2 is impaired by their persistent interaction with antigen.

HIV-specific IL-2–secreting CD4+ T Cells in Aviremic Patients Stably Persist during the Course of HIV Infection.

Next, we evaluated in a longitudinal analysis the impact of HIV viremia on the establishment/maintenance of HIV-specific memory CD4+ T cells. To carry out a longitudinal analysis we selected highly conserved epitopes. Based on the Los Alamos database (http://hiv-web.lanl.gov) and on other studies (38, 40), sequence alignment of the G065-G067 Gag region revealed that this sequence is highly conserved in 208 HIV-1 strains of different clades, a characteristic that validates the use of G065 and G067 peptides (94% conservation in 37 clade B strains and 85% in total HIV-1 strains). Fig. 5 illustrates the frequency of HIV-specific CD4+ T cells detected by IL-2 and IFN-γ at different time points of infection in three aviremic and three viremic patients. Aviremic patients 12C, 12B, and 11C maintained low viral load (<50 copies/ml) from the initiation of HAART until the most recent time points (i.e., 48 and 60 mo after HAART initiation). As shown in Fig. 5 a, significant and reproducible frequencies of IL-2+ and IL-2+/IFN-γ+ HIV-specific CD4+ T cells were detected after stimulation of PBMCs from these patients with the G067 peptide. The overall frequency of IL-2+ and IL-2+/IFN-γ+ G067-specific CD4+ T cells remained stable for up to 5 yr in patients 12C, 12B, and 11C (Fig. 5 a). Similar results were obtained with G065- and G076-specific CD4+ T cells (Fig. 5 a, right).

Figure 5.
Longitudinal analysis of epitope-specific CD4+ T cells in three aviremic (11C, 12C, and 13 C) and three viremic (111, 112, and 113) patients by intracellular IL-2 and IFN-γ staining and a CFSE-based proliferation assay. (a) Pseudo color plots ...

Longitudinal analysis of PBMCs from viremic therapy-failing patients (111, 112, and 113) showed a very different pattern. As illustrated in Fig. 5 b, frequencies of G067-specific IFN-γ CD4+ T cells predominate over IL-2 CD4+ T cells before HAART initiation (viral load >75,000 copies/ml, time point 1). However, cytokine-secreting cells were not found 1 yr after therapy initiation, at time points when viremia was <1,000 copies/ml, in the three therapy-failing patients (Fig. 5 b, middle, time point 2). It is important to note that between time points 1 and 2, a median of two viral rebounds were observed in the plasma of the three viremic patients analyzed. 5–6 yr after HAART initiation, when viremia levels were >30,000 copies/ml, we could again detect G067-specific CD4+ T cells secreting exclusively IFN-γ (Fig. 5 b, right). It appears that the presence of IFN-γ+/IL-2 HIV-specific CD4 T cells is restricted to time points of high viremia in therapy-failing patients.

Proliferation of G067-specific CD4+ T cells was measured (Fig. 5 c) at the same time points as in Fig. 5 b. In therapy-failing patients 111, 112, and 113, G067-specific CD4+ T cells were detected before HAART initiation, as illustrated by the significant percentages of CFSElow cells at this time point (9, 2, and 6%, respectively; Fig. 5 c, left). Interestingly, in the two patients (111 and 113) showing the highest percentages of CFSElow CD4+ T cells (9 and 6%, respectively), we could detect significant levels of IL-2–secreting cells by direct ex vivo ICS (Fig. 5, b and c, time point 1). It is important to note that despite the fact that we could observe CD4+ T cell proliferation at the two later time points, the level of IL-2–producing cells was too low to be detectable by ICS, demonstrating the sensitivity of the CFSE-based proliferation assay. At later time points (more than 1 yr after therapy initiation), G067-specific CD4+ T cells barely proliferated (average of 1.5% of CFSElow cells; Fig. 5 c, middle). This was particularly evident after 6 yr of therapy, when the average proliferative response was ~0.1%.

Together, these results indicate that in the course of the infection, HIV viral persistence lowers the frequency of IL-2–producing HIV-specific CD4+ T cells that possess a high proliferative potential. Our results indicate that IL-2 production by HIV-specific CD4+ T cells is associated with the persistence of a stable T cell memory compartment for up to 5 yr. Moreover, it appears that IL-2 IFN-γ+ HIV-specific CD4+ T cells are short-lived effector T cells.

Discussion

In this report we show that chronic viremia has a major impact on the maintenance of antigen-specific memory T cells endowed with proliferative and IL-2 secretion capacities. Cross-sectional and longitudinal analyses clearly showed that peptide-specific CD4+ T cell responses leading to proliferation and IL-2 production were affected in viremic patients. In contrast, a pool of CD4+ memory T cells, known to possess expansion potential, stably persists in aviremic patients for up to 5 yr.

Previous studies reported a low frequency of antigen-specific CD4+ T cells in HAART-treated patients (17, 2833). Our data contradict this notion because we have been able to reproducibly detect frequencies of up to 0.1% of HIV-specific CD4+ T cells. Two major factors could account for this difference. First, our study population mostly included patients who had been treated early during HIV infection. As reported (15, 35, 36), it is likely that early treatment prevents the depletion of HIV-specific CD4+ T cells mediated by a direct cytopathic effect of the virus or through chronic hyperimmune activation. Moreover, exogenous loading of single peptides circumvents problems related to competition for MHC class II binding that can be encountered when using peptide pools and to inefficient protein processing and peptide presentation when using intact proteins on frozen PBMCs. In fact, we have observed that the sum of the proliferative responses of individual peptide stimulations (i.e., the percentages of CFSElow CD4+ T cells) was consistently higher than the responses obtained with Gag protein or with Gag and Nef peptide pools (unpublished data). Indeed, we believe that our experimental strategy has allowed us to overcome a major sensitivity barrier encountered in other assays. We estimate the proliferation assay described here to be 100–1,000-fold more sensitive than other currently used assays such as direct ex vivo ICS assays or MHC class II tetramers staining.

In aviremic patients, we established a positive correlation (P < 0.0001; R = 0.81) between the frequency of HIV-specific CD4+ T cells secreting IL-2 and the CD4+ T cell proliferative responses. By contrast, there was no correlation (P = 0.4) between the percentages of HIV-specific, IFN-γ+ IL-2 CD4+ T cells and the level of virus-specific proliferation in viremic patients. Thus, our data corroborate previously published studies showing discrepancies between the frequency of HIV-specific CD4+ T cells, as detected by IFN-γ ICS, and the proliferative responses of HIV-specific CD4+ T cells in viremic patients (1820). Our findings strongly support the view that the reduction in HIV-specific lymphoproliferation in subjects with active viral replication is not due to the absence of HIV-specific CD4+ T cells, but rather to their proliferative “dysfunction,” caused by an inability to produce IL-2. Indeed, the addition of IL-2 to these cells restored their proliferative capacity (Fig. 3 d), which is abrogated in the presence of high viremia. Interestingly, IL-2–mediated rescue of nonproliferating HIV-specific CD4+ T cells has been observed in another cohort of viremic patients (41), indicating that this phenomenon is not restricted to the patients studied here. Although IL-2 could restore the proliferative potential of IFN-γ+ IL-2 CD4+ T cells, results presented in Fig. 5 b strongly suggest that these cells do not persist for a prolonged period of time in viremic patients. In fact, HIV-specific IFN-γ+ IL-2 CD4+ T cells are detected in the peripheral blood of viremic patients only at time points when the viral load is elevated. Although we cannot exclude the possibility that IFN-γ–producing cells might reside in peripheral tissues (44) and recirculate through the blood only when viremia increases, it is more likely that these cells are short lived and fail to stably persist as long-term memory T cells.

The association of persistent exposure to high viral loads with the disappearance of antigen-specific IL-2–producing T cells has also been observed in a murine model. Fuller and Zajac (42) recently showed that the frequency of lymphocytic choriomeningitis virus (LCMV)-specific CD4+ T cells producing IL-2 gradually decreased to undetectable levels in mice chronically exposed to high viral loads, but not in acutely infected mice. Similarly, LCMV-specific, TCR transgenic CD4+ T cells transferred to chronically infected mice gradually lost the ability to secrete IL-2, to proliferate, and to mediate B cell help (43). Importantly, transfer of these cells into naive, antigen-free mice did not restore their proliferative and IL-2 secretion ability, strongly suggesting that this state of “unresponsiveness” does not depend on the continued presence of virus, but rather reflects intrinsic functional properties of the cells due to previous exposure to high antigenemia (43).

A major finding of our study is that HIV-specific CD4+ T cells having a central memory phenotype (CD45RA CCR7+) and secreting IL-2 are found in aviremic but not viremic patients. A current model of memory T cell differentiation predicts that persistent antigenic stimulation prevents the establishment of a stable pool of functional long-term memory cells (46). The proposed mechanism was blocking, by persistent antigenic stimulation, of the differentiation of effectors into long-lived memory cells of the Tcm phenotype (46). An interpretation of our results according to this model is illustrated in Fig. 6 a. Alternatively, the “balance of growth and differentiation” model (47) would suggest that activation of HIV-specific naive cells, or of a small number of competent memory cells that are sustained by self-renewal, frequently occurs, but that HIV antigenemia in the therapy-failing patients rapidly induces differentiation of the activated cells into short-lived effector cells (Fig. 6 b) after a burst of proliferation (48). It is even possible that significant numbers of IL-2–producing memory cells (Tcm and Tem) exist in viremic patients but are rendered unresponsive through chronic stimulation-mediated tuning of activation thresholds (48). According to the results of our longitudinal study (Fig. 5), only viral loads that exceed a certain threshold might break this unresponsiveness, inducing proliferation/differentiation bursts that end up in IFN-γ only–producing cells. Similarly, some of the IFN-γ only–producing cells may regain capacity for IL-2 production after the viral load is sufficiently reduced.

Figure 6.
Alternative differentiation schemes describing the impact of HIV viremia on the size of memory/effector CD4+ T cell pools. (a) According to an extension of a general differentiation scheme proposed for CD8 T cells by Kaech et al. (reference 46), HIV-specific ...

Alternatively, the absence of HIV-specific Tcm in viremic patients could be explained by the fact that these cells are highly susceptible to HIV-1 infection and might ultimately be deleted by virus-mediated killing. Although this possibility cannot be excluded, it should be noted that exhaustion of IL-2–secreting CD4+ T cells was also observed in a non-CD4+ T cell tropic infection such as LCMV, suggesting that chronic stimulation rather than virus-mediated killing leads to the decline of IL-2+ HIV-specific CD4+ T cells.

We have observed that the cytokine secretion profile of CD4+ T cells with an effector memory phenotype (CD45RA CCR7) differs between viremic and aviremic patients (Fig. 4). CD4+ CD45RA CCR7 T cells from both aviremic and viremic patients produced IFN-γ, but only cells from aviremic patients maintained the ability to secrete IL-2. These results suggest that viral persistence not only impedes the establishment/maintenance of central memory CD4 T cells, but also alters the IL-2 production capacity of effector memory cells.

The incapacity of HIV-specific CD4+ T cells to produce IL-2 probably may limit their ability to express T cell help functions and may in particular affect anti-HIV CD8 T cell–mediated responses. Defects in the differentiation of HIV-specific CD8+ T cells during HIV chronic infection have been reported (39, 49) and this might be partly due to lack of HIV-specific IL-2–secreting CD4+ T cells. This is supported by the recent finding that administration of IL-2 in chronically LCMV-infected mice rescued CD8+ T cell function and induced protection (50). The continuous antigen-driven differentiation of proliferation-competent, IL-2–secreting, HIV-specific CD4+ T cells into IFN-γ only–producing cells with impaired proliferative and helper ability might be either a mechanism of viral evasion from immune control or merely a “normal” manifestation of chronic immune activation.

Acknowledgments

We thank R. Cheynier, D. Weiner, E. Haddad, and L. Cohen for critical review of the manuscript. We acknowledge the invaluable help of M. Connors, C. Estrela, and L. Kalfayan.

This work was supported by NIH, Canadian Institutes of Health Research (CIHR), Fonds de la Recherche en Santé du Québec (FRSQ), Genome Canada, and Canvac grants awarded to R.-P. Sékaly. R.-P. Sékaly is the Canada Research chair in Human Immunology. A.R. Dumont holds a CIHR Doctoral Research Award. This work was supported in part by a grant from Valorisation Recherche Québec. J.-P. Routy is a scientific scholar receiving support from the FRSQ.

Notes

Abbreviations used in this paper: CFSE, 5-(and-6)-carboxyfluorescein diacetate-succinimidyl ester; HAART, highly active antiretroviral therapy; ICS, intracellular cytokine staining; LCMV, lymphocytic choriomeningitis virus; SIV, simian immunodeficiency virus; Tcm, central memory CD4+ T cell(s); Tem, effector memory CD4+ T cell(s).

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