Innate immune responses are dependent on the presence of receptors that are capable of recognizing highly conserved features present on microorganisms (
1,
2). Thus, LPS present in cell walls of gram-negative bacteria is recognized by cell surface receptors present on many different types of cells, and viral products such as double-stranded (ds)RNA molecules can activate intracellular kinases (
1,
2). As a result of interaction of host cells with these foreign substances, defense mechanisms may be initiated to neutralize the invading infectious agents. Such innate defense mechanisms have been highly conserved. Thus, both plants and animals possess such mechanisms and in some cases may even use similar mediators (
3,
4). In contrast, an adaptive immune response exists only in vertebrates and is dependent on the presence of antigen receptors displayed on specialized cells of the immune system. However, an effective adaptive response in vertebrates generally requires participation of innate response mediators. Signals produced by the innate immune system may provide information about the origin or harmfulness of foreign substances and thus determine the kind of adaptive response that is generated (
1,
2).
Microbial LPS and viral dsRNA are potent inducers of nuclear factor (NF)-κB transcription factors, which have been implicated in regulation of host defense mechanisms in diverse species ranging from insects to mammals (
3). Although NF-κB can be activated in response to both nonspecific and antigen-specific signals generated during an immune response in vertebrates, only nonspecific signals may be inducers of NF-κB proteins in insects (
5,
6), which lack an adaptive immune system. The possible involvement of NF-κB factors in both innate and adaptive responses suggests they may function as an important link between these two systems. NF-κB proteins exist as dimers which typically reside in an inactive form in the cytoplasm complexed with the inhibitory IκB proteins (
3,
7). Treatment of cells with inducers of NF-κB results in phosphorylation and degradation of IκB proteins, which allows free NF-κB proteins to translocate to the nucleus and regulate the expression of target genes (
7). Activation of NF-κB target genes often occurs within minutes of receiving an inducing signal, making this system optimally responsive to many harmful stimuli, including invading microbes, DNA damaging agents, and oxidative stress (
3,
7). The predominant dimeric form of NF-κB in most cells is a complex of a 50-kd protein (p50) and a 65-kd protein called RelA or p65 (
7). However, studies on mice deficient in p50 and RelA have revealed distinct functions for these proteins (
8,
9) and have identified a requirement for RelA for embryonic survival (
9,
10). Gene disruption of other members of the NF-κB family, p52, c-Rel, and RelB, have indicated key roles for these proteins in various tissues (
11–
14).
Among the best characterized endogenously produced inducers of NF-κB in mammals are the proinflammatory cytokines TNF-α and IL-1 (
3). These cytokines can be produced by nonspecific mechanisms such as macrophage activation after phagocytosis or exposure to microbial products such as LPS. In addition, interaction of macrophages with the T cell–derived cytokine IFN-γ can also result in production of TNF-α and IL-1. Activation of NF-κB by these cytokines may activate expression of genes involved in regulation of an inflammatory response (
3). Indeed, our previous studies with RelA
−/− mice have shown that RelA is required for the activation of GM-CSF and IκB genes in fibroblasts treated with TNF-α (
9). Recent studies have also shown that this subunit of NF-κB can inhibit TNF-α–induced cell death, an adaptation that may allow TNF-α–responsive cells to function without induction of cell death (
15). Such an antiapoptotic function of RelA is likely the result of activation of genes that inhibit TNF-α–induced cell death.
Many genes containing potential NF-κB binding elements have been identified (
7). Interestingly, such genes often contain binding sites for other transcription factors as well, including AP-1, NF-IL6, and members of the IFN-γ–activated factors, signal transducer and activator of transcription (STAT)1 and IFN-regulatory factor (IRF)-1 (
16). Thus, transcription factor interactions within control regions may be used for optimal regulation of gene expression, as demonstrated biochemically for the IFN-β gene (
17). Of particular interest are synergistic interactions between TNF-α–inducible and IFN-γ–inducible factors. These two cytokines cooperate to activate many target genes, and such cooperation is often manifested in functional interactions between monocytes/macrophages (source of TNF-α) and T lymphocytes (source of IFN-γ) in inflammatory and immune responses.
Although NF-κB factors have been implicated in regulation of many important genes, the relatively ubiquitous nature of these proteins has precluded determination of specific contributions of different subunits in gene activation. One approach to determine the function of individual subunits is gene targeting in embryonic stem cells. Using this approach, we have now analyzed the role of the RelA subunit in activation of genes containing κB-like binding sites in fibroblasts, cells that not only are important for production of chemokines and cytokines but which also function as target cells for cytotoxic T cells and in some cases as APCs (
18). We find that RelA activation by LPS or TNF-α and activation of the IFN-γ pathway are both required for activation of key genes involved in adaptive immune responses. In contrast, RelA activation alone is sufficient for potent activation of genes involved in innate responses. Our results indicate a dual role for RelA in regulation of genes involved in both kinds of immune responses and in potentiating adaptive responses by nonspecific stimuli.