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J Clin Pathol. 2007 December; 60(12): 1307–1312.
Published online 2006 December 20. doi:  10.1136/jcp.2006.040634
PMCID: PMC2095568

Non‐operative breast pathology: columnar cell lesions


The term “columnar cell lesions” encompasses a spectrum of processes, characterised by variably dilated acini, lined by one to several layers of tightly packed, columnar‐shaped epithelial cells. These lesions have received renewed attention in the literature due to their high prevalence in biopsy specimens taken for assessment of mammographically detected microcalcification. In addition, increasing interest has been directed at the sub‐set of columnar cell lesions with varying degrees of cytological atypia. Recent observational and molecular genetic studies have provided strong circumstantial evidence to suggest that at least some of these lesions may represent the earliest morphologically identifiable, non‐obligate precursor of low grade breast carcinomas. However, the risk of both local recurrence and progression to invasive cancer appears to be exceedingly low. This review provides an update on recent clinicopathological and molecular data on columnar cell lesions and how these have changed our perception of, and the classification system for, these lesions. In addition, guidelines for the management of patients with columnar cell lesions diagnosed in core needle biopsy specimens are provided.

Columnar cell lesions in the breast have been recognised by histopathologists for a long period of time, but under a wide variety of names such as blunt duct adenosis, clinging carcinoma of monomorphic type,1 columnar alteration with prominent apical snouts and secretions,2 atypical cystic lobules,3 enlarged lobular units with columnar alteration4 and hyperplastic unfolded lobules,5 among others. This lack of clarity in nomenclature makes interpretation of the medical literature difficult with regard to incidence, behaviour and significance of these lesions. However, it is clear that such lesions are being seen more frequently as a result of breast screening mammography; they frequently present with, often low suspicion, microcalcifications on breast mammography and are, as a result, an increasingly common finding in non‐operative breast core samples. Indeed, columnar alterations were reported in 42% of 100 consecutive biopsy specifications for microcalcifications in one of the early seminal papers2 on these lesions. Specifically, the calcification was present within the columnar process itself in 74% of cases; these lesions are generally a direct cause of the radiological findings, not a coincidental histological finding.

The term “columnar cell lesions” is now widely used and incorporates a family of entities. The spectrum ranges from columnar cell change and columnar cell hyperplasia, through cytologically low grade but atypical lesions (flat epithelial atypia), architecturally complex lesions (now regarded as forms of atypical ductal hyperplasia (ADH), or indeed low grade ductal carcinoma in situ (DCIS) if more extensive). At the upper end of the spectrum one might include flat high grade DCIS, although the latter is not generally included in this group of entities. It should be noted that many columnar cell lesions in breast core biopsy samples cause no significant diagnostic difficulty. However, there is a small, but important sub‐group, that shows either cytological or architectural atypia and which can be problematic for the pathologist regarding diagnosis and classification, and the whole multidisciplinary team with respect to clinical behaviour and management. Such lesions can be especially difficult to interpret in core samples, due to the partial sampling of lesions inherent in the biopsy technique.

Microscopy of columnar cell lesions

Table 11 summarises features which assist in distinguishing the forms of columnar cell lesion and ADH. It is useful to remember that columnar cell changes arise in the terminal duct lobular unit (TDLU), and in surgical specimens the low power assessment of the overall architecture and geographical nature is valuable (fig 11).). This may not be assessable in core biopsy specimens, which include only small portions of tissue. At a higher power examination, columnar cell change can be seen to be formed from a single or a double layer of columnar cells that are of regular size and shape with relatively bland nuclear features and which are arranged perpendicular to the basement membrane. The nuclei are uniform, typically ovoid, with finely dispersed chromatin and do not bear conspicuous nucleoli. Mitoses are not generally seen. Secretions and calcifications are often present in the lumen and apical snouts are noted at the luminal aspect of the cells.

figure cp40634.f1
Figure 1 Columnar cell change affecting a terminal duct lobular unit. Note the presence of a coarse microcalcification.
Table thumbnail
Table 1 Differential diagnosis of columnar cell change, columnar cell hyperplasia, flat epithelial atypia and atypical ductal hyperplasia

The morphology of the cells forming columnar cell hyperplasia is essentially similar to those of columnar cell change ((figsfigs 2 and 33).). Rather than a single or double layer of cells, however, there is focal stratification; mounds or tufts of epithelial cells are often formed. True micropapillae (with bulbous tip extending into the lumen from a narrower stalk) or sieve‐like cribriform spaces are not a feature of columnar cell hyperplasia but should make one search for additional features of ADH/DCIS. There may, however, be some nuclear crowding and/or overlapping of nuclei in columnar cell hyperplasia. This should not be mistaken for an atypical proliferative process; of note, low grade neoplastic processes in the breast (ADH, DCIS and lobular in situ neoplasia) are typically formed from evenly‐spaced, regular, uniform cells. In columnar cell hyperplasia more overlapping and variation of cells is seen, although this is not as marked as in usual epithelial hyperplasia, which is truly formed from cells of a mixed phenotype. Apical snouts are often prominent in columnar cell hyperplasia and there is frequently abundant intraluminal secretion with microcalcification.

figure cp40634.f2
Figure 2 Columnar cell hyperplasia composed of tightly packed, columnar shaped cells, with elongated nuclei, arranged in >2 layers. Note the presence of some nuclear crowding and overlapping of nuclei.
figure cp40634.f3
Figure 3 Columnar cell hyperplasia with rudimentary mounds/tufts of columnar‐shaped cells. Nuclei are ovoid and closely packed. Apical snouts are present. There is no significant atypia.

Superimposed on the columnar cell morphology of the one or two layers of epithelial cells of columnar cell change or the stratified layering of columnar cell hyperplasia, there may be atypia. In previous systems of classification6,7 this was subdivided into architectural or cytological types. Subsequently, the World Health Organization Working Group on the Pathology and Genetics of Tumours of the Breast8 applied the term flat epithelial atypia (FEA) for columnar cell lesions with cytological atypia. That this term encompasses both columnar cell change and columnar cell hyperplasia, with cytological atypia, is somewhat counterintuitive; it should be noted that flat epithelial atypia is not necessarily “flat”, but rather does not form complex architectural patterns such as cribriform spaces or micropapillae. Those lesions previously categorised as columnar cell hyperplasia with architectural atypia, due to the presence of bridges or micropapillary structures formed from epithelial cells showing mild cytonuclear atypia, are now classified within the spectrum of ADH (fig 44)) or low grade DCIS. This latter categorisation depends, as in other situations, on the nature and the extent of the cytological and architectural atypia.

figure cp40634.f4
Figure 4 Lesion composed of a peripheral population formed from columnar cells with apical snouts. However there is architectural atypia in the form of rudimentary cribriform spaces. In the central portion of the space, the epithelial cell nuclei ...

The TDLUs bearing FEA have been described as typically having a rounded luminal shape, rather than an irregular internal outline as is seen in columnar cell changes without atypia; this feature may be valuable on low power examination of the section. Similarly, at low power examination the TDLUs bearing FEA may be darker appearing than usual, due to an increased nuclear to cytoplasmic ratio of the characteristic cells. In addition, on occasions visible on low power, a lymphoid infiltrate formed from collections of mature lymphoid cells may be present in the stroma associated with, and adjacent to, the FEA.

On higher power examination, FEA is most commonly formed from cuboidal cells with features of low grade DCIS; thus nuclei are round, small, uniform and evenly‐spaced (fig 55).). The chromatin pattern is finely dispersed. Nucleoli tend not to be conspicuous and mitoses are rarely seen. Apical snouts are commonly present and secretions with microcalcification noted. This form of FEA may be subtle and care should be taken not to overlook the lesion in breast histology specimens.

figure cp40634.f5
Figure 5 Flat epithelial atypia composed of a population of cuboidal cells with features of low grade ductal carcinoma in situ. The small, monomorphic and evenly‐spaced nuclei are round rather than ovoid, with finely dispersed chromatin. ...

In other forms within the category of FEA, the cells retain more of an overt columnar morphology, and thus may be more elongated and polarised, with nuclei arranged perpendicular to the basement membrane. However, in addition to these architectural features of columnar cell change or hyperplasia, the cells also show cytologically atypical features, of more “classical” type, including cytological pleomorphism, clumping of chromatin and distinct nucleoli. The nuclei may, in essence, be essentially similar to those nuclei seen typically in tubular carcinomas with a more obvious increase in nuclear to cytoplasmic ratio (fig 66)) than seen in the form of flat epithelial atypia with round, uniform, evenly spaced nuclei, described above. Less commonly, the nuclei may show a superficial resemblance to the cytology of colorectal adenomas.

figure cp40634.f6
Figure 6 Flat epithelial atypia formed from columnar cells showing mild to moderate nuclear atypia with an increased nuclear to cytoplasmic ratio. Mounding and tufting can be observed and apical snouts are present.

In core biopsy specimens in particular, cytological atypia in columnar cell change may be difficult to assess and a tightrope must be balanced between over‐diagnosis (and an excessively high benign biopsy rate in subsequent surgical diagnostic biopsy) and reporting as atypical any lesions of concern.

It should be remembered, however, if the cytonuclear features are those of high grade atypia, for example, formed from large cells showing marked pleomorphism and nuclear atypia, then the disease should be categorised as flat high grade DCIS and not as FEA. This too may be difficult to assess and caution is advised not to “over‐call” lesions with moderate atypia as flat high grade DCIS in core biopsy; in such cases prudence should be applied, and on occasions the suspicious (B4) category can be used (fig 77).

figure cp40634.f7
Figure 7 Cytonuclear atypia in a columnar cell process. Note the apical snouts and columnar morphology, but in association with nuclei showing atypia in the form of mild pleomorphism, variation in shape, clumped chromatin and prominent nucleoli. ...

Differential diagnosis

The differential diagnosis of columnar cells lesion includes apocrine metaplasia and other fibrocystic changes, such as small benign cysts. Careful examination of the cytological features of the epithelium should be undertaken to avoid missing the diagnosis of FEA in particular, which can be subtle and which can be overlooked completely or misinterpreted as microcysts. Both apocrine change and columnar cell lesions arise in the TDLU and although both have apical snouts, morphological assessment will show the granular, eosinophilic cytoplasm with inclusions in apocrine change. The nuclei of apocrine cells are also typically larger, have one or more prominent nucleoli, and may show some variation in size; the nuclei of columnar cell change are blander, more uniform and lack prominent nucleoli.

Unfortunately additional and special stains are, in general, of little assistance in the assessment and diagnosis of columnar cell lesions, with or without atypia. The cells of the columnar cell processes typically express luminal cytokeratins, such as cytokeratin 19, and both oestrogen and progesterone receptors.7 In particular, the pattern of oestrogen receptor staining in columnar cell change is typically diffusely positive when compared to heterogeneous positivity of usual epithelial hyperplasia and normal breast lobules.7,9,10,11 Conversely, columnar cell lesions do not express basal markers such as cytokeratin 5/6.7 In cases when the there is uncertainty in distinguishing columnar cell change from apocrine change, immunohistochemistry may prove helpful as columnar cells invariable express oestrogen receptor and also bcl‐2,10 while apocrine cells typically express gross cystic disease fluid protein 15 but are negative for bcl‐2 and oestrogen receptor.

Molecular and genetic studies and clinical studies of columnar cell lesions

The clinical significance of the columnar cell lesions remains poorly understood. Although this is in part due to the difficulties in interpretation of the medical literature due to the nomenclature used, as noted above, such lesions have recently been studied in small numbers and in few observational series. Flat epithelial atypia is more frequently identified in association with established DCIS than one would see purely by chance.2,3 Columnar cell lesions, in particular those with nuclear atypia, may also co‐exist with lobular in situ neoplasia12,13 (fig 88).). Observational studies have, in addition, noted a relationship with tubular carcinoma,11,14 and Rosen suggested some years ago that that tubular carcinoma “might sometimes arise when the hyperplastic lesion transformed”.12

figure cp40634.f8
Figure 8 Terminal duct lobular unit concurrently affected by columnar cell change (right), lobular neoplasia (centre) and apocrine metaplasia (left).

Apart from this, somewhat circumstantial, evidence and opinion, robust data on the clinical behaviour of these lesions is very scarce; Eusebi et al found 25 cases of monomorphic/low grade “clinging” carcinoma from 80 cases of DCIS out of a total of 9446 biopsy specimens originally diagnosed as benign.15 However, only one of the 25 cases developed a so‐called recurrence, at a mean follow up of 17.5 years, and this as the same “clinging” carcinoma, which would now be classified as FEA.16 Importantly, no cases developed invasive disease. Similarly, in the EORTC 10853 DCIS trial,17 59 patients with low grade “clinging” carcinoma were noted; with a median follow‐up of 5.4 years, no local recurrences have been reported. De Mascarel et al have reported in abstract form on 115 patients with columnar cell hyperplasia with atypia,18 45 of who had had radiotherapy; they identified three cases of subsequent invasive carcinoma, one case of DCIS in the contralateral breast and three “recurrences” of FEA. Thus, overall, authorities on the subject suggest that the risk of patients developing invasive breast carcinoma in the same breast as an index case of FEA is very low,19 albeit based on the limited date available to date regarding the precursor risk of columnar cell lesions.

Small series examining the molecular and genetic changes in atypical columnar cell lesions have begun to appear in the medical literature; the numbers in many of these are small. Moinfar et al20 noted a high level (77%) of loss of heterozygosity (LOH), most commonly at 11q, 16q and 3p. Eighteen cases were associated with DCIS or invasive carcinoma, in which similar genetic changes were present. Similarly, Simpson et al7 found changes in FEA and in associated columnar cell change and columnar cell hyperplasia using comparative genomic hybridisation. In five of eight cases, there were also similar abnormalities in associated DCIS or invasive carcinoma, suggesting an evolutionary spectrum. The genetic changes were few in number, but recurrent losses (eg, of 16q, 17p) and gains (eg, of 16p) were present across the spectrum of 81 lesions from 18 patients. Interestingly, the degree of hyperplasia and atypia at the morphological level was associated with a stepwise increase in the number of unbalanced chromosomal changes at the molecular level.7 Several of the reported series to date have thus examined somewhat biased groups of columnar cell lesions that have included, in the same patients, a range of abnormalities through to DCIS and invasive carcinoma. Very few cases of the commoner and less worrisome end of the spectrum that are not associated with more advanced disease in the same breast have been examined. Dabbs et al21 reported that neither of two examples of pure columnar cell change showed abnormalities with LOH assessment, but losses at one or more loci were present in two of three cases of columnar cell hyperplasia and in two‐thirds of the 15 cases of FEA. However, the most frequent loci reported to be affected in CCL/FEA, 16q and 11q7,10,20 in other series, were not analysed in that study.21 As in the other molecular studies described, some of the genetic alterations in the columnar cell lesions in this study were similar to those in associated DCIS and invasive carcinoma. Thus, at least a proportion of columnar cell lesions almost certainly represents the earliest form of precursor of low grade DCIS and of invasive breast carcinoma recognised to date. Interestingly, the idea that columnar cell changes could be the earliest morphologically identifiable precursor of breast cancer was first put forward in British literature by Muir, in 1941, who suggested that in the evolution of breast cancer, the “earliest change to be observed in the epithelium of the acini is an increased prominence of the cells; they become…often of more columnar type; sometimes this is a marked feature”.22

Management of columnar cell lesions in breast core biopsy specimens

Despite the emerging molecular information regarding the neoplastic and precursor nature of, at least a subset of, columnar cell lesions, the management of these lesions is also based on very limited data. There is an urgent need for clarity regarding the clinical behaviour, and guidance regarding management of these lesions, both when identified in breast cores and in subsequent diagnostic surgical samples.

Columnar cell change or columnar cell hyperplasia is regarded as benign and should be categorised as such (B2) on core biopsy. There is no need to undertake additional assessment in the form of further levels or immunohistochemistry (the latter, as noted above is often unhelpful) and the case should be managed as per the multidisciplinary team discussion. Thus if the histopathological findings are concordant with the radiological/clinical features, the available data suggests that diagnostic surgical excision is not required when columnar cell change or columnar cell hyperplasia is identified in a breast core biopsy specimen.

When, however, cytological atypia is present and the lesion is reported histologically as FEA, the core biopsy should be classified as bearing a lesion of uncertain malignant potential (B3). Similarly, if there is architectural atypia the core should be categorized according to the extent and degree of this; this will often be placed within the B3 category, akin to ADH (although the term ADH is not recommended in core biopsy reporting, as per the UK NHS BSP Guidelines23).

There is, it must be noted, very limited outcome data which indicates that subsequent excision shows a more advanced lesion in 20%24 to 30% of cases25 when columnar cell atypia/FEA is identified in a core biopsy; this is almost entirely derived from abstracts rather than peer‐reviewed manuscripts and the numbers in the series are small.24,25,26,27,28,29,30,31 It is clear that there is an association with malignancy, for example tubular carcinoma as noted above, and these additional data are sufficiently worrisome that most authorities recommend diagnostic surgical excision following diagnosis of columnar cell atypia/FEA in a breast core biopsy.32 However, further series of larger numbers of cases of core biopsies with columnar cell atypia with follow‐up surgery are urgently required to clarify the clinical association with more established malignancy, which remains in doubt.


In conclusion, columnar cell lesions are being identified with increasing frequency in breast core biopsy specimens undertaken for the assessment of mammographic microcalcifications, often of low radiological suspicion. Although the majority of these lesions do not cause significant diagnostic difficulty, a sub‐group of these lesions shows atypical histological features; these should be classified as B3, lesion of uncertain malignant potential, on core biopsy. Such atypical columnar cell lesions remain poorly understood, but small studies have begun to describe the molecular and clinical findings in these lesions. Although there are still very limited data, these suggest that FEA may be the earliest morphologically identifiable non‐obligate precursor of low grade breast carcinomas. The true precursor risk appears very low, but these lesions may co‐exist with entities such as low grade DCIS and low grade invasive carcinoma. Thus when FEA is identified in a breast core biopsy specimen, at present it is recommended that diagnostic surgical excision should be undertaken to search for more established adjacent malignant disease.

Take‐home messages

  • Columnar cell lesions are frequently seen as a cause of mammographic microcalcification.
  • The majority are benign (B2), but a minority show low grade cytological atypia (flat epithelial atypia) and should be reported as B3 on core biopsy.
  • There is emerging evidence that such low grade atypical columnar cell lesions are the earliest non‐obligate precursors of breast cancer, to date.
  • If architectural atypia is also present, the lesion should be reported as atypical ductal hyperplasia or low grade ductal carcinoma in situ, according to extent.


Competing interests: None declared.


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