The origin of peroxisomes has long been matter of debate, and partially underscoring this controversy has been the mode by which peroxisome-destined proteins are synthesized and targeted within the cell. For instance, a major tenant of the previous “ER-vesiculation” model for peroxisome biogenesis was that all of the soluble and membrane bound protein constituents of the peroxisome were synthesized cotranslationally on the ER (
Beevers, 1979). These nascent proteins were proposed to then be sequestered into an expanding vesicle that would eventually bud from the ER to produce a mature, functional peroxisome (
Beevers, 1979). However, subsequent observations suggested that peroxisomal proteins were not synthesized on the ER but on free polyribosomes in the cytosol. These and other data led to the “growth and division” model for peroxisome biogenesis wherein peroxisomes, like mitochondria and chloroplasts, were considered to increase in size by the posttranslational import of their protein constituents and proliferate only through the division of preexisting peroxisomes (
Lazarow and Fujiki, 1985;
Purdue and Lazarow, 2001;
Lazarow, 2003). Notably, the ER in the “growth and division” model was deemed only to be a source of membrane lipids for the enlargement of preexisting peroxisomes.
Although for most of the past two decades the “growth and division” model has generally been considered the paradigm for peroxisome biogenesis, the recent monitoring of the sorting of various PMPs in evolutionarily diverse organisms has revealed that for at least a subset of these PMPs, referred to as group I PMPs (
Titorenko and Rachubinski, 2001), the initial sorting site is the ER rather than the peroxisome membrane. Sorting of group I PMPs to and within the ER also appears to be mediated by several different mechanisms (). For instance, in mammalian cells, the group I PMP Pex16p is inserted cotranslationally into ER membranes and seems to be localized throughout the entire ER before its sorting to peroxisomes (
Kim et al., 2006). In the yeast
Saccharomyces cerevisiae,
Yarrowia lipolytica, and
Hansenula polymorpha, group I PMPs Pex2p, -3p, and -16p are also initially targeted to the “general” ER (
Titorenko and Rachubinski, 1998;
Hoepfner et al., 2005;
Haan et al., 2006). However, unlike mammalian Pex16p, the ER targeting and insertion of these essential components of peroxisome assembly in
S. cerevisiae does not require the Sec61p-dependent machinery for co- and posttranslational import of secretory proteins (
South et al., 2001). Furthermore, unlike mammalian Pex16p that remains in the general ER before its sorting to peroxisomes (
Kim et al., 2006), at least one of the group I PMPs in
S. cerevisiae, namely, Pex3p, is directed from the general ER to a distinct subdomain of the ER (
Hoepfner et al., 2005). This ER subdomain is referred to as the preperoxisomal template (
Titorenko and Rachubinski, 2001) and is considered to be the site where preperoxisomal carriers are formed. That is, after being segregated into the preperoxisomal template, Pex3p serves as a docking factor for Pex19p, a predominantly cytosolic protein (
Hoepfner et al., 2005). The Pex3p-dependent recruitment of Pex19p from the cytosol to the outer face of the preperoxisomal template in
S. cerevisiae is mandatory for the budding of small preperoxisomal vesicles (
Hoepfner et al., 2005). These ER-derived carriers of Pex2p, -3p, -16p, and -19p lack secretory cargo proteins (
Titorenko et al., 1997).
Although the mechanism responsible for segregating group I PMPs from secretory and ER resident membrane proteins in yeast remains to be established, it is noteworthy that the membrane of the ER-derived preperoxisomal vesicles in
Y. lipolytica has unusual ergosterol- and ceramide-rich lipid domains (
Boukh-Viner et al., 2005). These lipid domains are similar to detergent-resistant lipid domains in the membrane of
S. cerevisiae ER, where glycosylphosphatidylinositol-anchored secretory proteins cluster and thereby segregate from other secretory proteins (
Mayor and Riezman, 2004). It is possible, therefore, that discrete lipid domains, perhaps ergosterol- and ceramide-rich lipid domains, in the membrane of yeast ER serve also as a sorting platform for segregating group I PMPs from secretory and ER resident membrane proteins. The resulting partitioning of group I PMPs into these membrane domains could also serve to generate an ER template for the formation of preperoxisomal vesicles.
In contrast to yeast Pex2p, -3p, and -16p and mammalian Pex16p, other group I PMPs, such as ascorbate peroxidase (APX) in plant cells (
Mullen et al., 1999) and Pex13p in mouse dendritic cells (
Geuze et al., 2003), can only be detected in a distinct portion of the ER, suggesting that they are targeted from the cytosol directly to a preexisting subdomain of the ER membrane. The terms peroxisomal ER (pER) and lamellar ER extension were coined for this ER found in plants and mice, respectively (
Mullen et al., 2001;
Tabak et al., 2003). At least one notable difference between these two ER subdomains is that pER is considered to be a portion of rough ER membrane (
Lisenbee et al., 2003), whereas the lamellar ER extension is a specialized domain in smooth ER membrane (
Geuze et al., 2003). In plant cells, the cytosol-to-pER targeting of APX occurs posttranslationally and requires ATP as well as at least three components of the Hsp70 chaperone machinery (
Mullen et al., 1999).
Collectively, the aforementioned findings suggest that by segregating a distinct set of membrane proteins and lipids into specialized ER subdomains, plant and mouse dendritic cells have evolved a platform for the targeting of group I PMPs from the cytosol to the ER membrane. The existence of such a platform in the ER membrane could increase the efficiency of the ER-dependent, multistep process of peroxisome assembly in these cells.
What structural features of group I PMPs are crucial for their sorting to the ER or to the peroxisomal membrane via either general ER or an ER subdomain remain to be determined. At present, it seems that the targeting of these PMPs from the cytosol to the ER membrane and their subsequent exit from the ER are mediated by two partially overlapping sets of sorting signals. One set of signals targets group I PMPs either co- or posttranslationally to the general ER or an ER subdomain, whereas the other set of signals act from within the ER lumen to sort these PMPs to the peroxisome (
Baerends et al., 1996;
Elgersma et al., 1997;
Mullen and Trelease, 2000;
Kim et al., 2006).