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Nat Rev Neurosci. Author manuscript; available in PMC 2007 September 1.
Published in final edited form as:
PMCID: PMC1887812
EMSID: UKMS484

Neuronal Calcium Sensor Proteins: Generating Diversity in Neuronal Ca2+ Signalling

Abstract

In neurons, intracellular calcium signals have crucial roles in activating neurotransmitter release and in triggering alterations in neuronal function. Calmodulin has been widely studied as a Ca2+ sensor that has several defined roles in neuronal Ca2+ signalling, but members of the neuronal calcium sensor protein family have begun to emerge as key components in a number of regulatory pathways and have increased the diversity of neuronal Ca2+ signalling pathways. The differing properties of these proteins allow them to have discrete, non-redundant functions.

Many different aspects of neuronal function are regulated by changes in the concentration of intracellular free Ca2+. An understanding of Ca2+ signalling pathways in neurons will not only increase our understanding of basic aspects of neuronal regulation but possibly also highlight abnormalities in signalling in disease states. There are two main conundrums: how changes in the concentration of a simple ion can modify neuronal function in a multitude of ways, and how the same ion can produce distinct outcomes over short, medium or long distances and timescales in the same types of neuron. It is well known that an increase in presynaptic Ca2+ concentration following influx though voltage-gated Ca2+ channels triggers neurotransmitter release. Ca2+ signals can lead to a range of alterations in neuronal function lasting from seconds to days through effects on ion channels and neurotransmission, and can also influence gene expression, neuronal growth, neuronal development, survival and death.

The diversity of events controlled by Ca2+ must partly be a consequence of the distinct types of Ca2+ signal that differ spatially, temporally and in magnitude1. The differing outcomes will also be a consequence of the actions of a range of Ca2+ sensor proteins that transduce the Ca2+ signals into specific changes in cellular function. The specificity of the outcomes will depend on factors such as the affinity of the different sensors for Ca2+, their localization in relation to the Ca2+ signal and their interactions with other proteins 2. One such Ca2+ sensor, calmodulin, has been very widely studied as it is a ubiquitous protein, and its role in synaptic plasticity, for example, has been defined in detail. Another Ca2+-binding protein, synaptotagmin, is now well established as the Ca2+ sensor for fast neurotransmission 3.

A number of other Ca2+-binding proteins related to calmodulin are enriched in or expressed only in the nervous system where they have distinct roles in the regulation of neuronal function. These include the neuronal calcium sensor (NCS) protein family, members of which have been implicated in a very wide range of Ca2+ signalling events in neurons and photoreceptors which have been reviewed previously 4, 5. These range from very specific single functions for particular NCS proteins in the retina to more broad ranging functions in neurotransmitter release, channel and receptor regulation, control of gene transcription, neuronal growth and survival. Members of the NCS family appeared early in evolution, and there has since been a progressive increase in the size of the family. Rather than discuss all of the functions of the NCS proteins, this review will concentrate on those that illustrate how they have diversified to have distinct properties and functions. The distinct properties of the NCS proteins means that they function not just as ‘other calmodulins’ but, instead, have very discrete and non-redundant roles that, in several cases, have been confirmed by genetic manipulations.

The significance of these Ca2+ sensors might not yet be fully appreciated, nor is there a general understanding of the distinct properties of the different family members that allow them to contribute to the specificity of Ca2+ signalling. This Review will outline general aspects of neuronal Ca2+ signalling, introduce the members of the NCS family and summarize their individual properties and physiological functions. I will highlight how the evolutionary expansion of this family, with the appearance of distinct variations from an original Ca2+-binding protein prototype, has generated an increased diversity in neuronal Ca2+ signalling.

Ca2+ signals in neurons

Changes in Ca2+ concentration

Neurons maintain a resting intracellular Ca2+ concentration in the range of 40-100 nM 6. The receipt of a neurotransmitter signal from another neuron, or some other form of stimulation, can lead to changes in Ca2+ concentration ranging from highly localized (see Fig. 1) and transient Ca2+ elevations to longer lasting and global changes throughout the neuron7. Ca2+ can enter cells through plasma membrane channels such as voltage-gated Ca2+ channels or NMDA (N-methyl-D-aspartate) receptors, or be released from intracellular stores in response to messengers such as inositol-1,4,5-trisphosphate 8. The existence of sites of local Ca2+ entry into the cytoplasm (from external or internal sources) has resulted in the concept of Ca2+ nanodomains and microdomains 7, in which the effective intracellular Ca2+ concentration could transiently reach up to hundreds of micromolar near the mouths of the Ca2+ channels.

Figure 1
Diversity of Ca2+ signals in neurons. A wide variety of different Ca2+ signals that range from very local pre- or post-presynaptic signals to an increase in Ca2+ concentration throughout the neuron can be generated in mature neurons. Three types of Ca ...

In presynaptic nerve terminals, local elevations in Ca2+ levels are involved, for example, in triggering neurotransmitter release through exocytosis of synaptic vesicles less than 100 μsec after Ca2+ entry9. Post-synaptic Ca2+ entry following neurotransmission can subsequently generate localized Ca2+ elevations in dendritic spines. Ca2+ concentration can be increased in dendritic spines without changes in the adjacent dendrite due to limited diffusion of Ca2+ through the narrow necks of the spines 6 . More extensive or sustained synaptic input to a neuron can result in Ca2+ waves in the dendrites or global Ca2+ elevations throughout the neuron (Fig. 1).

Different signals, diverse outcomes

The significance of the differing types of Ca2+ signals in neurons is that they result in a wide range of different physiological outcomes. Indeed, even quite similar Ca2+ signals can have distinct or even opposite results. Examples of this are the opposing phenomena of long-term potentiation (LTP) and long-term depression (LTD), either of which can be brought about in the same neurons by transient Ca2+ signals depending on their exact timing and magnitude. LTP is triggered by larger (micromolar) and shorter-lived Ca2+ elevations (a few seconds) and LTD by a Ca2+ elevation to only a few hundred nM but for a longer duration 10 . Another example is the ability of Ca2+ signals of differing magnitude in neuronal growth cones to stimulate either attraction or repulsion 11 . In addition to these effects are long-term changes that can lead to potentially permanent changes in gene expression 12 that, for example, underlie learning and memory. Also, global Ca2+ signals can lead to neuronal cell death 13.

Ca2+ sensor proteins: calmodulin

Changes in intracellular Ca2+ concentration can be detected by Ca2+-binding proteins that act as Ca2+ buffers or that act as Ca2+ sensors. The latter are characterized by their ability to bind and release Ca2+ over the physiological range of Ca2+ concentrations, to undergo a significant conformational change on Ca2+ binding and to consequently bind and regulate specific target proteins to modify their function. In some cases they can also regulate target proteins in their Ca2+-free form. The best studied of these Ca2+ sensors is the ubiquitous Ca2+ sensor calmodulin, which contains four EF-hand Ca2+-binding motifs (BOX 1). One key pathway in which calmodulin functions involvse activation of Ca2+/calmodulin-dependent protein kinases (CaMKs), and CaMKII has an established important role in synaptic plasticity 14 . Another calmodulin target, the protein phosphatase calcineurin, has a key role in dephosphorylation, and thereby activation, of the transcription factor nuclear factor of activated T cells (NFAT) 15.

Box 1. The EF-hand motif

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Two representations of the same view of the helix-loop-helix structure of the first EF hand of calmodulin with a bound Ca2+ ion.

The EF-hand as a Ca2+-binding motif was first characterized for the protein parvalbumin and is known to be one of the most common domains encoded by the human genome, being present in 122 predicted proteins. This motif has a helix-loop-helix structure, consisting of 29 amino acids, that binds a single Ca2+ ion. There are six residues involved in Ca2+ binding at positions 1, 3, 5, 7, 9 and 12, and these residues are denoted X, Y, Z, -Y, -X and -Z. Despite their related structure, there is considerable variability in the affinities of different EF-hands for Ca2+ and the extent to which they undergo a conformational change on Ca2+ binding. EF-hand-containing proteins can have very fast on-rates, with Ca2+ binding limited only by the rate of Ca2+ diffusion. The equilibrium dissociation constant can be variable (over a 1000-fold range), however, owing to differences in the Ca2+ off-rate between different EF-hands, which depends on the nature of the amino acid at the position 9 of the EF hand 111 . The slowest off-rates are found in proteins that act as Ca2+ buffers. Variability in off-rate is seen for the EF hands of calmodulin, in which the off-rate for the EF-hands in the N-terminal lobe is over 100 times faster than for the two in the C-terminal lobe 106 , which allows independent regulation by each lobe of calmodulin. The equilibrium dissociation constant for Ca2+-calmodulin based on in vitro Ca2+ binding is ~10 μM but the off-rates are substantially modified by the interaction of calmodulin with its target proteins, leading to slowing of Ca2+ dissociation and an increase in the apparent affinity for Ca2+ 106, 107.

Ca2+ sensor proteins: NCS proteins

Members of the NCS protein family are among the Ca2+-binding proteins expressed in neurons (Table 1). Although these proteins possess four EF-hand motifs they have limited similarity to calmodulin (no more than 20% identity). NCS-1 was discovered originally as frequenin 16 in Drosophila melanogaster and was designated NCS-1 as it was thought to be expressed only in neuronal cell types 17 . However, this is not the case, and it is the most widely expressed of the NCS proteins 18-20 . Indeed, an orthologue of NCS-1 exists in Saccharomyces cerevisiae (60% identical to the human protein) and is essential for survival in this organism 21.

Table 1
Summary of the members of NCS protein family represented in mammalian genomes

During evolution there has been a progressive increase in the complexity of the NCS family, such that there are now 5 classes of NCS proteins (A-E) that have been defined based on their amino acid sequences. Three NCS proteins are expressed in Caenorhabditis elegans, whereas D. melanogaster has four NCS proteins — two very similar frequenins, a neurocalcin and a single Kv channel-interacting protein (KChIP). Zebrafish have two NCS-1 orthologues 22 , up to 8 class B proteins, a recoverin, at least 8 guanylyl cyclase-activating proteins (GCAPs)23 and 5 KChIPs. Mammals have a highly conserved set of 14 NCS genes that encode only a single NCS-1, 5 class B proteins, one recoverin, three GCAPs and four KChIPs (Table 1). There are also several alternatively spliced versions of the mammalian KChIPs 24 . In all species, recoverin and GCAPs are expressed in the retina whereas the other NCS proteins are expressed to varying extents in neurons — in some cases, with very specific patterns of expression 25 . Hippocalcin, for example, is expressed at high levels in hippocampal pyramidal neurons and only moderately in certain other neuronal cell types 25, 26.

Ca2+ binding and membrane localization

A common feature of the NCS proteins is that their first EF-hand cannot bind Ca2+ owing to inactivating substitutions in the EF-hand loop in all the family In structural studies, human and yeast NCS-1 27, 28 , bovine neurocalcin δ 29 bovine GCAP2 30 and human GCAP3 31 were found to have three bound Ca2+ ions. By contrast, recoverin 32 and KChIP1 33, 34 were isolated with only two bound Ca2+ ions as a result of an inactivating substitution of residues required for Ca2+ coordination in another one of their EF hands.

The NCS proteins all have very similar structures which, in contrast to the dumb-bell shape of Ca2+-loaded calmodulin, are more compact and globular even when Ca2+ is bound (Fig.2). All mammalian NCS proteins of classes A-D, as well as KChIP1, are N-terminally myristoylated 4 . Some KChIP2 and 3 isoforms instead have putative palmitoylation sites35 . Both myristoylation and palmitoylation would be predicted to allow membrane association of these NCS proteins. In fact, as discussed below, some NCS proteins such as recoverin and the class B NCS proteins only expose their myristoyl group when Ca2+ is bound to them 32, 36, 37 . These NCS proteins are cytosolic at resting Ca2+ and reversibly associate with the plasma membrane and the Golgi complex when Ca2+is elevated. By contrast, others such NCS-1 are always associated with the plasma membrane and Golgi complex 38 and KChIP1 with distinct vesicular structures 39, 40 . The distinct localisations of these myristoylated proteins are in part determined by interactions of their N-terminal amino acids with specific phosphoinositides 39, 41.

Figure 2
The structure of NCS proteins . The structure and Ca2+-binding properties of NCS proteins, in comparison to calmodulin, are shown. a A schematic representation of the general domain structure of NCS proteins. These proteins contain 4 EF hands, the first ...

Structural insights from recoverin

Extensive structural information is available for recoverin, which was the first of the NCS proteins to be discovered 42 . Recoverin inhibits rhodopsin kinase when in its Ca2+-bound form 43 , and is therefore important in light adaptation in photoreceptors 44 . In its Ca2+-free form, the myristoyl group of recoverin is sequestered in a hydrophobic pocket within the protein45 . Sequential Ca2+ binding to EF hand 3 followed by EF hand 2 46-48 results in a significant conformational change that leads to extrusion of the myristoyl group 32 . This ‘Ca2+/myristoyl switch’ enables recoverin to associate with membranes through its myristoyl group in a Ca2+-dependent manner (see the Ca2+/myristoyl switch movie in the Online links box). As the hydrophobic residues of recoverin that are involved in the interaction with the myristoyl group are conserved in the other members of the NCS protein family, it was thought that all myristoylated NCS proteins would have a similar Ca2+/myristoyl switch32 . However, in addition to recoverin, only the class B proteins show this switch 36-38, 49 . Other members of the family instead use their myristoyl group for constitutive membrane association 38, 39, 50.

The Ca2+-induced conformational change in recoverin also exposes a hydrophobic groove, which forms the binding site for its only known target, rhodopsin kinase 51 . A similar hydrophobic surface is exposed in the structure of Ca2+-bound NCS-1 27, 28 and KChIP1 33, 52 , and so the same mechanism could be used by other NCS proteins for some of their Ca2+-dependent target interactions. This does not, however, explain all of the interactions as, for example, GCAPs do not require Ca2+ for binding to their target guanylyl cyclases and remain bound in the presence or absence of Ca2+ 50, 53 and binding sites for target proteins on NCS-1 have been mapped to domains other than the exposed hydrophobic surface 54 . In addition, early structural studies implied that KChIP1 interacted with Kv4 channels through the hydrophobic groove 33 but more recent structural analyses 52, 55 have shown that two distinct sites within the N-terminal domain of Kv4 channels can bind independently to different regions of KChIP1, and mutagenesis has demonstrated a third direct interaction with KChIPs involving the C terminus of the channel 56, 57 . All three sites of interaction affect the traffic of Kv4 channels to the plasma membrane and their regulation by KChIPs, but in distinct ways 52, 55, 57 . The differential ability of the NCS proteins to interact with specific target proteins is undoubtedly the result of differences in surface residues that are involved in the protein-protein interactions within an overall conserved structure2.

The functions of NCS proteins

The NCS proteins regulate many cellular events in neurons and in retinal photoreceptors which are listed in Table 1. The evidence for these functions originally came from a range of biochemical analyses and studies of the effects of overexpressing the proteins, but in recent years many of these proposed functions have been confirmed in genetic studies in which individual NCS proteins have been knocked out or disrupted (Table 2).

Table 2
Summary of the phenotypes resulting from genetic alterations of NCS proteins

Recoverin and the GCAPs are expressed only in the retina, where both classes of proteins have specific roles in light adaptation 44, 58-60 . The only known targets for regulation by the GCAPs are retinal guanylyl cyclases23 ; recoverin interacts with rhodopsin kinase and inhibits its activity and has an additional, uncharacterized, effect on visual sensitivity unrelated to its regulation of rhodopsin kinase 58 . The other NCS proteins are expressed in neurons and have been implicated in a wider range of cellular functions 5 . The KChIPs were discovered as proteins that interacted with K+ channels of the Kv4 family 61 . KChIP3 was independently discovered as calsenilin, a protein that could interact with, and affect processing of, presenilin62 and amyloid precursor protein63 , and alter Ca2+ release from the endoplasmic reticulum64 . KChIP4 also interacts with presenilin65 . KChIP3 was also identified as the Ca2+-dependent transcriptional repressor known as downstream regulatory element antagonistic modulator (DREAM) 66 on the basis of its binding to the downstream regulator element (DRE) sequence, which is present in the promoter region of many genes. There are well characterised pathways by which an increase in intracellular Ca2+-concentration can activate transcription. In the case of DREAM, transcription is repressed when Ca2+-concentration is low and this repression is lost when DREAM binds Ca2+. More recently, KChIP3 has been found to interact not only directly with the DRE motif but also with various transcription factors67, 68 , All four KChIPs can bind to DRE sequences in DNA and inhibit transcription 69 . The analysis of two independent strains of KChIP3-knockout mouse supports the involvement of KChIP3 in all three of the proposed functions, namely regulation of Kv4 channels, repression of gene transcription and regulation of presenilin processing 70, 71 . The functions of the class B NCS proteins (visinin-like proteins (VILIPs) 1-3 and neurocalcins) are not as well characterized (but see Table 1).

A number of studies have implicated NCS proteins in disease states (in addition to the potential role of KChIPs in Alzheimer’s disease through their interaction with presenilin) based on altered expression levels of particular NCS proteins in post-mortem brain tissue from schizophrenic and epileptic individuals and Alzheimer’s disease patients 72 . Most drugs used in the treatment of schizophrenia and depression are antagonists of dopamine D2-like receptors implicating dysfunction of dopaminergic systems in these diseases but the exact underlying defects are unknown. A direct link to NCS proteins came from the discovery that NCS-1 directly interacts with D2 receptors and can inhibit receptor desensitisation which occurs due to receptor internalisation 73 . Furthermore, increased levels of NCS-1 have been observed in brain tissue from patients with schizophrenia or bipolar disorder 74 and this could conceivably result in increased neuronal excitability, increased intracellular Ca2+ concentration and subsequent cell death. In addition, a link between a single nucleotide polymorphism (SNP) in the gene for the D2 receptor has been associated with differences in nicotine dependence in human subjects and these observations have been extended to show the existence of a genetic interaction with an SNP in a non-coding region of the NCS-1 gene 75 . The significance of this SNP in NCS-1 and whether it affects NCS-1 expression remains to be determined.

Specificity and range of NCS function

NCS-1: one protein, multiple functions

NCS-1 is most probably derived from the primordial NCS precursor and is expressed from yeast to man. Studies in mammalian cells have implicated NCS-1 in several functions 5 , although the only data using genetic manipulations come from lower organisms, in which very diverse phenotypes have resulted (Table 2). The S. cerevisiae orthologue frequenin (Frq1) is essential for survival because it is involved in the activation of one of the two phosphatidylinositol 4-kinases, Pik1 21 . Knockout of NCS-1 is not lethal in other organisms but leads to developmental phenotypes, including changes in the rate of development, in Dictyostelium discoideum 76 . Knockdown of ncs-1, one of the two very closely related NCS-1 genes in zebrafish, abolishes formation of the semicircular canals of the inner ear 22 . Changes in neuronal functions are shown in D. melanogaster, in which overexpression of the NCS-1 orthologue frequenin resulted in increased facilitation of neurotransmission 16 , and in C. elegans, in which knockout of NCS-1 impaired learning and memory 77 . How can a single Ca2+ sensor be involved in so many different activities? NCS-1 is expressed highly in all brain regions 20, 25 and also in many non-neuronal cell types 18, 20 . In mammalian cells, NCS-1 regulates the orthologue of the yeast Pik1, phosphatidylinositol 4-kinase IIIβ 78, 79 , which could explain some of its functional roles, but a key aspect of NCS-1 is its ability to bind to, and regulate, many target proteins that are unrelated to each other 80 (Figure 3). The interactions of NCS-1 with different targets proteins can involve distinct regions of NCS-1 54, 73 , and some interactions can be independent of Ca2+ binding 73, 80 . The link between these target interactions and the varied physiological roles of NCS-1 still remain to be fully established.

Figure 3
A protein-protein interaction map showing the known interactions of NCS-1. The figure summarises data on the known protein interactions made by NCS-1 proteins and indicates whether these are Ca2+-dependent or -independent. AP1, clathrin adaptor protein ...

The role of GCAPs in light adaptation

There are three genes that encode GCAPs in the human genome 23 . GCAPs are present only in the retina and have a specific role in light adaptation during phototransduction through their ability to regulate retinal guanylyl cyclases 1 and 2. GCAPs interact with and activate these two proteins at low concentrations of Ca2+ in the light, but at higher Ca2+ levels in the dark these GCAPs undergo an ‘activator-inhibitor’ transition 81 to become inhibitors of guanylyl cyclases 1 and 2 (Figure 2). GCAP1 and GCAP2 are present in both rod and cone photoreceptors in human retina; GCAP3 is expressed only in cones, but is not expressed in the mouse, which implies that this protein is not essential for normal vision 82 . GCAP1 and GCAP2 are present in the retina at similar concentrations and regulate both of the guanylyl cyclases83 . Expressing GCAP1 in mice that lack both GCAP1 and GCAP2 recovers almost all normal function in rods and cones 59, 60.

Different GCAPs, same targets

As the two forms of GCAP regulate the same targets in the same cell type, why is more than one GCAP required? GCAP1 and GCAP2 are only 49% identical and appear to interact with guanylyl cyclases in different ways 83, 84 . A significant aspect of GCAP function is their high Ca2+ affinity. Analysis of the Ca2+ affinities of GCAP1 and GCAP2 and the Ca2+ requirement of the GCAPs for regulation of retinal guanylyl cyclases has revealed two important issues. First, the affinities of the GCAPs for Ca2+ is set to the relevant physiological range (25-250 nM in mouse rods, for example 85) at intracellular concentrations of Mg2+ 86 The second issue is that GCAP1 and GCAP2 differ in their Ca2+-binding affinities for retinal guanylyl cyclase activation (Fig 2) by about 7-fold 83, 86 . This has led to the proposal of a ‘Ca2+ relay’ model for retinal guanylyl cyclase activation 84 in which both GCAPs would be needed to function over the physiological range of Ca2+ concentration in the retina. The fine-tuning of these different Ca2+ affinities would increase the overall sensitivity of the regulatory mechanisms, as their joint action would expand the dynamic range of responses to Ca2+ without losing the sensitivity that is contributed by the cooperative effect of Ca2+ on retinal guanylyl cylase regulation by each GCAP.

KChIPs: a large subfamily with distinct properties

Fast-inactivating A-type K currents are known to be important in controlling crucial aspects of neuronal excitability, including inhibition of the back-propagation of dendritic action potentials. These currents are also important for synaptic plasticity, and for regulation of excitability in the heart 87, 88 . Kv4 channel α-subunits are essential pore-forming determinants of A-type currents in somato-dendritic compartments such as in hippocampal pyramidal neurons 89 . Changes in the expression of Kv4 channels have been implicated in conditions such as epilepsy 90 and Kv4.2 channels in dorsal horn neurons of the spinal cord are targets for regulation of pain sensitivity 91 . The regulation of Kv4 subunits by KChIPs has therefore been studied in detail and provides clues as to why this class of NCS proteins is so diverse. The KChIP class has become the most diversified of the NCS proteins during evolution, from one KChIP in D. melanogaster, which is equally similar to all mammalian KChIPs, to mammals, which have four KChIP genes and a large number of potential splice variants 24 . Analysis in human tissues indicates that at least 16 KChIP isoforms are detectably expressed (Fig 5) although some of the KChIP2 isoforms are expressed only in the heart 92 , where KChIP2 has an established role in the regulation of Kv4 channels 93 . The conserved C-terminal EF hand-containing domain of the human isoforms are at least 70% identical to each other and the key difference between these KChIP isoforms lies in their N-terminal domains. The literature on these splice variants is confusing as the variants have been given multiple names 88, 94 and additional variants that have been studied might be expressed only in certain mammalian species92.

Three aspects of the KChIPs might be important for understanding their diversity: differential cell-type expression of the proteins; differences in their intracellular targeting and localization; and the different effects that they have on the traffic and gating properties of Kv4 channels. It is also possible that the existence of multiple genes might allow cell-type specific regulation at the level of transcription through their distinct promoters.

Different KChIPs, different intracellular localizations

When expressed in heterologous cell types the KChIPs show differences in their intrinsic targeting and localization, which might be important for their efficiency in stimulating traffic of Kv4 channels to the plasma membrane 39, 95 . KChIP1.2 is myristoylated and this allows its targeting to a population of intracellular vesicles, which increases the efficiency of trafficking of Kv4 channels to the plasma membrane 39, 40 . KChIPs 2.1, 2.2, 2.3 and 3.1 possess potential sites for palmitoylation (Fig 4) that is predicted to allow their membrane association. Palmitoylation of KChIPs 2 and 3 is required for efficient trafficking of Kv4 channels 35 . Surprisingly, however, the intrinsic targeting of KChIPs 2 and 3 differs: only palmitoylated KChIP2 associates with the plasma membrane when expressed alone 95 (Fig 4). It seems that KChIP3 only becomes membrane associated when it interacts with Kv4 channels. The other KChIPs do not possess any obvious membrane localization signals and when expressed alone are usually cytosolic 95 (Fig 4) and become membrane-associated only through their binding to Kv4 channels.

Figure 4
The KChIP class of NCS proteins and their splice variants a Alternative splicing of the four human KChIP genes generates a series of variants with distinct N-terminal domains. Some of the isoforms possess myristoylation or palmitoylation sites (as indicated) ...

Different effects of KChIPs on Kv4 channels

The first study of the effects of KChIP on Kv4 channels compared KChIPs 1.2, 2.3, 3.161 , which were all found to have the same effects (with some quantitative differences): increasing cell surface expression of Kv4, shifting the voltage-dependency of activation, slowing of inactivation and more rapid recovery from inactivation. The N terminus of the KChIPs is not required for its interaction with Kv4 or the basic effects on channel traffic and gating properties 61 , but it has subsequently become clear that the variability in the N-terminal domains of the KChIP isoforms generates the variable effects on Kv4 channels. A comparison of the effects of KChIP1 splice variants on the rate of recovery from inactivation of Kv4 channels has shown differences in the effects of KChIP1.1 and 1.2 isoforms 96, 97 . Several studies on KChIP2 isoforms have shown differences in the efficiency of stimulation of traffic of Kv4 channels to the cell surface and in the modulation of gating properties 35, 94, 98, 99 . In fact, one KChIP2 isoform inhibits Kv4 surface expression, although this isoform is expressed only in the heart 92, 94 .One KChIP4 isoform, KChIP4.1, has similar effects to those originally reported in increasing traffic to the cell surface and slowing channel inactivation 65, 100 . By contrast, the KChIP4.4 isoform does not stimulate traffic of Kv4 channels and leads to the almost complete abolition of the fast inactivation of Kv4 channels. This effect has been attributed to the presence of a K-channel inactivation suppressor (KIS) domain in the N terminus of this isoform 65, 100.

The majority of studies on the properties of KChIPs and their influence on Kv4 channels have looked at the effect of single KChIPs. It has become apparent, however, that interaction of KChIPs with Kv4 channels results in the formation of an octomeric structure containing four KChIPs and four Kv4 channel subunits 52, 101 . As KChIPs can form homo- or hetero-oligomers 102, 103 , it raises the possible additional complexity that functional KChIP-Kv4 complexes could contain more than one KChIP isoform leading to further degrees of subtle variation in channel function.

Differential expression for different proteins

The possibility of KChIPs being components of hetero-oligomers makes consideration of the expression patterns of the KChIP proteins of considerable importance. Analysis of the expression of the four KChIP genes through the use of PCR after reverse transcription of RNA (RT-PCR) and in situ hybridization showed major regional differences in their expression in the brain 24 . The use of antisera specific for KChIP1-4, which are believed to be able to recognise all of the splice variants of each gene, indicated a marked cell-type specific expression of the KChIPs in the hippocampus, cortex striatum and cerebellum 95, 104, 105 . It would clearly be of interest to have more detailed mapping of the expression of each of the KChIP splice variants, but the information already available shows that each neuronal cell type might express only a limited repertoire of the possible set of KChIPs along with specific Kv4 channel isoforms. The detailed properties of A-type K currents are very variable between neuronal cell types or even in different regions of the same neuron 87, 88 , and it is easy to imagine that this could result in part from cell-type specific expression or localization of the KChIP isoforms to fine-tune the channels for their physiological function.

Why are many Ca2+ sensors needed?

Genetic studies have demonstrated that individual NCS proteins have essential functions that cannot be compensated for by other family members or other Ca2+ sensors in the absence of their expression. Differences in Ca2+ affinities, localization through intrinsic targeting signals, different cellular dynamics, differential cellular expression and distinct target proteins are factors in both the specialization of NCS protein function and the basis for increased diversity of the family during evolution.

Differing Ca2+ affinities

Calmodulin interacts with a large number of different target proteins to regulate a multitude of cellular processes, so the question arises as to why NCS proteins are also required to transduce Ca2+ signals in neurons. One key factor is the difference in affinity for Ca2+ shown by the NCS proteins compared to calmodulin (Fig 2). Calmodulin binds Ca2+ in vitro with a dissociation constant (KD) of ~5-10 μM. Its affinity is increased, however, following binding of target proteins, which can reduce the off-rate for Ca2+ 106, 107 , leading to prolonged activation of target proteins and an increase in the apparent Ca2+ affinity within cells 108 . It was also found 108 .that most of the Ca2+-bound calmodulin in cells is bound to target proteins which are i excess and therefore only target proteins with high affinities for calmodulin are likely to be regulated under physiological conditions. This could explain why additional specific Ca2+ sensors are required.

The measured Ca2+-binding affinities of each of the NCS proteins varies 4 and the exact Ca2+ -binding affinities of each of the NCS proteins seems to be fine-tuned by conserved variation in the sequences of the EF-hand domains and by effects on protein structure of the N-terminal myristoyl group 48 and even the C-terminal residues of the proteins 109 so as to match their sensitivity to physiological requirements. Nevertheless, the general picture is that they are expected to be in a Ca2+ -free state under resting conditions and all have a higher affinity for Ca2+ than calmodulin does, which allows them to bind Ca2+ following small increases in concentration above resting levels. In addition, all of the NCS proteins show intrinsic cooperativity in Ca2+ binding when assayed in vitro or in assays that measure activation of their target proteins. This means that the NCS proteins usually have restricted dynamic ranges over which they can respond to changes in intracellular Ca2+ concentration to regulate their target proteins. This is exemplified by experiments on hippocalcin: analysis of its Ca2+/myristoyl switch in living cells indicated a value for half-maximal activation of 300 nM free Ca2+ and is fully activated when intracellular free Ca2+ concentration reaches 800nM Ca2+ 37 . The small concentration ranges over which the NCS proteins can respond to Ca2+ is also an explanation for the need for more than one GCAP as discussed above.

Specific subcellular and cellular localizations

As noted above, not all NCS proteins have a Ca2+/myristoyl switch and some of them, such as NCS-1 and KChIP1, are constitutively membrane associated through their myristoyl group. Despite this membrane association, NCS-1 and KChIP1 target to distinct organelles where their presence enables them to respond to very transient, local elevations in intracellular Ca2+ 39 . By contrast, NCS proteins that translocate to membranes using the Ca2+/myristoyl switch might require longer lasting and more global Ca2+ elevations for their activation and interaction with targets or could require repetitive Ca2+ signals to allow them to accumulate on membranes. This already gives some indication of how NCS proteins could mediate distinct cellular changes in response to different Ca2+ signals.

In addition to their distinct subcellular localization patterns, many NCS proteins are also expressed in a cell-type specific manner. NCS-1 seems to be expressed in most, if not all, neurons whereas other NCS proteins have distinct and more limited patterns of cellular expression in the brain 25, 104 and, as described above, the multiple KChIPs isoforms have highly cell-type specific expression patterns.

Specific target proteins

Initial work on NCS-1 showed that in vitro it could regulate the same targets as calmodulin, including calcineurin and phosphodiesterase 110 . These are not likely to be physiological targets for NCS-1, as calmodulin is present at much higher concentrations than NCS-1 in neurons and calcineurin and phosphodiesterase have a high affinity for calmodulin which is therefore much more likely to regulate these targets. It cannot be ruled out, however, that these proteins might be regulated by NCS-1 at concentrations of Ca2+ that are too low to activate calmodulin. It is now clear that NCS-1 (Figure 3) and other members of the NCS family have distinct target proteins that they regulate80 — many of these do not overlap with calmodulin and so are more likely to be the true physiological targets that contribute to the specificity of the NCS protein function.

Future perspectives

There have been significant advances in our understanding of the functional roles of the NCS and other neuronal Ca2+ sensor proteins and the way in which their basic properties have been fine-tuned to enable them to regulate different cellular processes by coupling Ca2+ signals to the regulation of specific target proteins. The diversity of the NCS family is clearly important in allowing subtle and neuron-specific patterns of Ca2+ -dependent regulation to occur. Further mapping of the cellular expression of all the family members, including the various isoforms, will be valuable. We also need experimental approaches to examine the relationship between particular Ca2+ signals and activation of the NCS protein complement within different neurons to provide information on when and where these proteins are switched on during neuronal activity. We know in only a few cases the molecular link between regulation of an identified target protein and the physiological outcome at a cellular or organism level and this link needs to be explored in more detail through molecular manipulations of target protein interactions. Finally, we still do not know the full range of the physiological functions of the NCS proteins and, for some of them, very little functional information is available. Future work will need to examine the functions of the less well-studied NCS proteins through targeted gene disruption in animals and the use of gene knockdown approaches in isolated neurons.

Box 2 Other neuronal Ca2+ sensor proteins

The NCS proteins are not the only EF-hand Ca2+-binding proteins with predominantly neuronal expression. In recent years another EF-hand subfamily known as the Ca2+-binding proteins (CaBPs) 112 or caldendrins 113 has been discovered, which consists of 5 genes in humans and which emerged during evolution in vertebrates. CaBP1 has three splice variants, a long form originally called caldendrin 113 and two shorter forms known as CaBP1 long and short 112 . CaBPs are expressed in neurons 114 — or in some cases in the retina (CaBP2, 4 and 5) 112 — and have been shown to have roles in the regulation of intracellular targets such as inositol trisphosphate (InsP3) receptors 115-117 as well as L- and P/Q-type voltage-gated Ca2+ channels 118, 119 and transient receptor potential (TRP) channels120 . These proteins seems to overlap in their target interactions with calmodulin to a greater extent than the NCS proteins (Fig 4) but a non-redundant role for CaBP4 in the regulation of Ca(v)1.4 Ca2+ channels in photoreceptors has been established using Cabp4-knockout mouse 121 ; mutations in the gene encoding CaBP4 result in autosomal recessive night blindness in humans 122 . For information on other members of the calmodulin superfamily of EF-hand Ca2+-binding proteins see reference 2.

Acknowledgements

I would like to thank Neil Venn for supplying some of the images used in Figure 4 and Professor Alan Morgan for comments on the manuscript. Work in the author’s lab was supported by the Wellcome Trust.

Glossary

Ca2+ nanodomain
A local Ca2+ signal generated within around 20nm of an open Ca2+ channel
Ca2+ microdomain
A local Ca2+ signal generated within less than 1μm of an open Ca2+ channel
Long term potentiation (LTP)
A long-lasting increase in the efficiency of neurotransmission, induced by high frequency stimulation, usually studied in hippocampal neurons and seen as an increase in the magnitude of post-synaptic potentials.
Long term depression (LTD)
A long-lasting decrease in the efficiency of neurotransmission, induced by low frequency stimulation, usually studied in hippocampal and cerebellar neurons and seen as an decrease in the magnitude of post-synaptic potentials.
Myristoylation
A post-translational modification that adds a covalently-linked myristoyl group to glycine at position 2 of a protein via the action of the enzyme N-myristoyl transferase. The sequence requirement for myristoylation is well established. This lipid modification can then allow the protein to become membrane associated through lipid insertion of the myristoyl group. The functional significance of myristoylation for protein localisation can be tested by mutation of the required glycine.
Nuclear factor of activated T cells (NFAT)
A transcription factor that in unstimulated cells resides in the cytoplasm as a highly phosphorylated protein. Elevation Ca2+ activates calcineurin through calmodulin. Calcineurin dephosphorylates NFAT which can then translocate into the nucleas and regulate gene transcription until it is rephosphorylated.
Palmitoylation
A post-translational modification that links a palmitoyl group to an internal cysteine of a protein through a thioester linkage. This lipid modification can then allow the protein to become membrane associated through lipid insertion of the palmitoyl group. The functional significance of palmitoylation for protein localisation can be tested by mutation of the relevant cysteine residue.
Phosphatidylinositol 4-kinase
An enzyme that converts phosphatidylinositol to phosphatidylinositol 4-phosphate which is then converted to phosphatidylinositol 4,5-bisphosphate (PI(4,5)P2). (PI(4,5)P2) is required for many cellular events including membrane traffic events and is the target for phospholipase C which breaks down PI(4,5)P2 to release the second messengers diacylglycerol and inositol 1,4,5 trisphosphate.
Single nucleotide polymorphism (SNP)
A nucleotide within the coding or non-coding region of a gene that can be variable between different members of the population. The presence of different nucleotides may have no effect or could change a single amino acid within the protein or alternatively lead to differences in gene expression or its regulation.

Footnotes

About the author. Robert Burgoyne is Professor of Physiology and Head of the School of Biomedical Sciences in the University of Liverpool, Liverpool, UK. He received his PhD from the University of Birmingham in 1977 working on vaccinia virus and subsequently moved his interests to the study of neurons and neuroendocrine cells. Since establishing his research in Liverpool in 1983, his laboratory has been concerned with regulation of neuronal signalling by Ca2+ including the mechanisms that underlie hormone and neurotransmitter release. He has studied the roles of proteins involved in the machinery for vesicle exocytosis and in more recent years the roles of neuronal calcium sensors in neuronal signalling pathways.

FURTHER INFORMATION

Ca2+/myristoyl switch movie: http://www.liv.ac.uk/physiology/ncs/conform.html

FURTHER INFORMATION

Burgoyne home page:

http://www.liv.ac.uk/physiology/root/department%20of%20physiology/research/burgoyne/index.htm

NCS family home page:

http://www.liv.ac.uk/physiology/ncs/index.html

AfCS Molecule pages:

NCS-1

http://www.signaling-gateway.org/molecule/query?afcsid=A000957

KChIP1

http://www.signaling-gateway.org/molecule/query?afcsid=A001308

KChIP2

http://www.signaling-gateway.org/molecule/query?afcsid=A001309

KChIP3

http://www.signaling-gateway.org/molecule/query?afcsid=A001310

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