Synaptic Plasticity: One STEP at a time

doi:10.1016/j.tins.2006.06.007

Trends Neurosci. Author manuscript; available in PMC 2006 November 2.

Published in final edited form as:

Trends Neurosci. 2006 August; 29(8): 452–458.

Published online 2006 June 30. doi: 10.1016/j.tins.2006.06.007

PMCID: PMC1630769

NIHMSID: NIHMS13331

Synaptic Plasticity: One STEP at a time

Steven P. Braithwaite,¹ S. Paul,² A.C. Nairn,³ and P.J. Lombroso⁴

¹ AGY Therapeutics Inc, 270 E. Grand Avenue, South San Francisco, CA 94080

² Dept of Neurology, University of New Mexico, Albuquerque, NM 87131

³ Dept of Psychiatry, Yale University School of Medicine, New Haven, CT 06520

⁴ Child Study Center, Yale University School of Medicine, New Haven, CT 06520

The publisher's final edited version of this article is available at Trends Neurosci

See other articles in PMC that cite the published article.

Abstract

STriatal Enriched tyrosine Phosphatase (STEP) has recently been identified as a critical player in the regulation of synaptic function. It is highly restricted to neurons within the CNS and acts by down-regulating the activity of the MAP kinases, the tyrosine kinase Fyn, and NMDA receptors. By modulating these substrates, STEP acts on several parallel pathways that impact upon the progression of synaptic plasticity. Recent advances have demonstrated the importance of STEP in normal cognitive function and its possible involvement in cognitive disorders, such as Alzheimer’s disease.

Introduction

Tyrosine phosphorylation of synaptic receptors and signaling molecules regulates synaptic activity (1,2). Considerable work has characterized the kinases involved in activity-dependent synaptic plasticity, with relatively less emphasis on the participating protein tyrosine phosphatases (PTPs). The identification and characterization of tyrosine phosphatases that participate in this process has begun and a number of PTPs specifically expressed within the brain have been identified (3).

One of these PTPs was named STEP (for STriatal-Enriched tyrosine Phosphatase, also known as PTPN5), and recent evidence suggests it plays an important role in synaptic plasticity. The past decade has seen considerable advances in our understanding of the function of STEP, as well as the identification of several target proteins by which STEP controls the development of synaptic plasticity. This review concentrates on three groups of proteins that STEP regulates: the mitogen-activated protein kinases (MAPKs), the tyrosine kinase Fyn, and the NMDA receptor complex. Tyrosine phosphorylation of one member of the MAPK family, the extracellular signal regulated kinase (ERK), is necessary for the expression and maintenance of synaptic plasticity in many brain regions (4), and disruption of the ERK pathway leads to a disruption of learning and memory. Activation of the Src family of non-receptor tyrosine kinases is also regulated by tyrosine phosphorylation. One of the functions of these kinases is to phosphorylate NMDA receptors, thereby modulating their channel conductance properties and facilitating their movement to neuronal plasma membranes (2). This potentiates their activity and is required for the induction of several forms of long-term potentiation (LTP) and long-term depression (LTD) (5,6). This review discusses the properties of STEP that are necessary for its ability to regulate these three families of proteins and its role in synaptic function, learning and CNS pathology.

Molecular properties of STEP

STEP is specifically expressed within neurons of the central nervous system (7). As its name indicates, the highest expression level is within the striatum (8). However, more recent work has found that it is expressed at lower levels in multiple brain regions including the neocortex, amygdala, hippocampus, and embryonic spinal cord (9,10).

Tyrosine phosphatases are broadly divided into the receptor-like and the non-receptor, intracellular phosphatases (11,3). Of the approximately 100 tyrosine phosphatases identified in the human genome, STEP falls into a small subset of the non-receptor tyrosine phosphatases (12,13). Based on sequence homology, its closest relatives are HePTP and PTP-SL that are also expressed in a restricted fashion, with HePTP found only in leucocytes and PTP-SL enriched within the cerebellum (14–17).

STEP mRNA is alternatively spliced into two main variants (Figure 1). The protein products are termed STEP₄₆ and STEP₆₁ based on their observed electrophoretic mobility (7,18). STEP₄₆ is cytosolic, while STEP₆₁ is membrane-bound and differs from STEP₄₆ by the presence of an extra 172 amino acids at its N-terminus (Figure 1). STEP₆₁ is not a plasma membrane spanning protein; rather, the N-terminal sequence targets STEP₆₁ to intracellular organelles including the endoplasmic reticulum (ER) and the postsynaptic density (9,18,19). The orientation of STEP₆₁ on the ER is not currently known. The ability of STEP to regulate cytosolic proteins favors an orientation in which the catalytic domain faces the cytosolic compartment, although additional work is needed to clarify this point. Two additional alternatively spliced variants are expressed that lack an active phosphatase domain (20,21). The functions of these inactive variants are not known, although it is possible that in the absence of a catalytic domain, they may act as dominant-negative STEP isoforms that compete with the active isoforms for binding to substrates. In this review, we will concentrate on STEP₄₆ and STEP₆₁ as most of the work to date has studied the function of these two variants.

Figure 1

STEP structure

Both STEP₄₆ and STEP₆₁ have a C-terminal domain of approximately 280 amino acids that contains a catalytic site with the consensus sequence (I/V)HCXAGXXR(S/T)G (Figure 1). A kinase-interaction motif (KIM) is located N-terminal to the phosphatase domain. This domain is uniquely found in STEP, HePTP and PTP-SL and is the binding site for members of the MAP kinase family. The N-terminal domain of STEP₆₁ contains two polyproline rich regions. The first of these was shown to mediate, at least in part, the interactions of STEP₆₁ with substrates (for example, Fyn; 22). Two hydrophobic transmembrane domains and two PEST sequences are also present. The latter sequences are potential sites for proteolytic cleavage, and two studies have shown that STEP₆₁ is cleaved after hypoxia/anoxia in rat forebrain or excitotoxic glutamate stimulation (23,24); however, whether the PEST sites in STEP₆₁ are the points of cleavage remains to be determined.

Baseline expression of STEP isoforms varies depending on the tissue examined. Thus, the striatum and portions of the amygdala (central nucleus) express both STEP₄₆ and STEP₆₁. The hippocampus, neocortex, spinal cord, and lateral aspects of the amygdala only express the larger STEP₆₁ variant. This variation in isoform levels is reflected in the stronger immunohistochemical staining within the striatum and central nucleus compared, for example, to the hippocampus. STEP is expressed throughout the length of the neuron in a Golgi-like impregnation pattern (9). Thus, the somata, dendritic arbors and axonal processes are STEP immunoreactive. The projection targets of striatal neurons (globus pallidus and substantia nigra) have only neuritic staining with no detectable STEP immunoreactivity in cell bodies. A conclusion of this latter finding is that, although the majority of work to date has emphasized the function of STEP postsynaptically, STEP is also present presynaptically and may regulate synaptic transmission through presynaptic mechanisms. For example, ERK has been shown to regulate synapsin I by phosphorylation at key regulatory serine residues (25), and phosphorylation at these sites leads to the movement of synaptic vesicles from a reserve pool to a readily useable pool (26). The presence of STEP in this compartment would allow for the inactivation of ERK and a decrease in the pool of vesicles immediately available for fusion. This hypothesis is currently being tested.

Regulation of STEP activity

Studies on the regulation of STEP activity have focused upon the striatum where it is expressed in medium spiny neurons that make up about 90% of the neuronal cell types within this brain region (reviewed in 27). Dopaminergic inputs from the midbrain and glutamatergic afferents from the cortex converge on the spines of these neurons (28). Considerable evidence indicates that the integration of these two synaptic inputs promotes their impact on synaptic function and plasticity, although the mechanisms for this remain unclear (29). Recent findings suggest that STEP is involved in the integration of these signals. Stimulation of dopamine D1 receptors is coupled to adenylyl cyclase through Gα_s leading to increased cAMP levels, which in turn activates the PKA pathway. PKA phosphorylates both STEP₄₆ and STEP₆₁ at a regulatory serine residue within their respective KIM domains, as well as a serine residue in the novel 172 amino acid N-terminal domain of STEP₆₁. The effect of phosphorylation is to decrease STEP’s enzymatic activity towards MAP kinases (Figure 2). This may be due to directly affecting the catalytic activity of the phosphatase, as is suggested by in vitro studies (30), which would result in effects on any substrate. Additionally phosphorylation within the KIM domain has been demonstrated to prevent STEP from binding to ERK; however, it remains to be determined whether interactions with other substrates are also affected by phosphorylation within the KIM domain.

Figure 2

STEP regulation

Phosphorylation of STEP is stimulated by D1 selective agonists, blocked by D1 receptor antagonists and not blocked by D2 receptor antagonists (31). Glutamate stimulation reverses this process and activates STEP. Stimulation of NMDA receptors, but not AMPA receptors, results in the influx of Ca²⁺ and activation of the serine/threonine phosphatase calcineurin. As a result, STEP is dephosphorylated at the KIM domain regulatory serine residue (30). Furthermore, it has been demonstrated that PP-1 can act to dephosphorylate the regulatory serine residue in the KIM domain of STEP (32) and the highly related HePTP (33).

STEP functions

The specificity of PTPs towards their substrates arises through amino acid modules that target PTPs to cellular compartments, while additional motifs lead to their interactions with substrate proteins. As mentioned above, STEP, along with its closest relatives HePTP and PTP-SL, contain a KIM domain that is necessary for binding to MAPK family members ERK, p38α, and JNK (33). All three of these PTPs dephosphorylate the regulatory tyrosine in the activation loop of MAPKs and thereby inactivate them (30,34–36).

The ability of STEP to regulate ERK (Figure 3) has been shown in a number of studies. In corticostriatal cultures, ERK is rapidly activated (within 2 minutes) in response to glutamate stimulation, followed by a delayed inactivation of ERK to baseline phosphorylation levels by 20–30 minutes. This delayed inactivation of ERK is mediated by STEP through its delayed dephosphorylation within the KIM domain in response to NMDA receptor-dependent activation of calcineurin (30) (Figure 2). Thus, STEP acts to regulate the temporal profile of ERK activity, and consequently helps to control its translocation to the nucleus, and subsequent downstream nuclear signaling.

Figure 3

STEP dephosphorylates ERK, Fyn and the NMDA receptor complex

In a second study, STEP was found to play an important role in a signal transduction cascade that mediates the effects of psychostimulant drugs on ERK activation (32). Psychostimulant drugs of abuse exert their addictive effects by increasing extracellular dopamine in the nucleus accumbens, where they likely alter the plasticity of corticostriatal glutamatergic transmission. Cocaine and amphetamine activate ERK in a subset of medium spiny neurons of the dorsal striatum and nucleus accumbens, through the combined action of NMDA and D1-dopaminergic receptors. The activation of ERK involves D1-dopamine receptor-dependent regulation of PKA, phosphorylation of the regulatory protein DARPP-32, inhibition of the serine/threonine phosphatase, PP-1, and inhibition of STEP. Thus, activation of ERK, by a protein phosphatase cascade, functions as a detector of coincidence of dopamine and glutamate signals converging on accumbens medium spiny neurons and is critical for long-lasting effects of drugs of abuse.

Recently, a series of in vivo investigations directly tested the hypothesis that STEP might be involved in regulating synaptic plasticity (37). ERK activation is required for the consolidation of many forms of long-term memory, including fear conditioning (38). Mutations of PTPs in their catalytic domain create inactive variants that may be used as substrate-trapping proteins to identify potential substrates. Inactive PTPs bind to their substrates but do not release them, as release requires dephosphorylation of the target protein (39). A substrate-trapping mutant of STEP₄₆ was made by mutating a required cysteine in the catalytic domain to a serine. This STEP variant was made cell permeable by attaching a TAT-peptide to the N-terminus. It was infused into the lateral amygdala of rats to determine whether it would bind to ERK, disrupt ERK signaling, and thereby block consolidation of long-term memories after fear conditioning. Animals were trained on a standard protocol where a shock is paired with an acoustic cue. Short-term memory was not affected in these animals, implying that the substrate trapping TAT-STEP protein did not block the acquisition of this form of memory. However, 24 hours after fear conditioning, long-term memory was disrupted, indicating an effect on the consolidation of fear memories.

There were two striking observations in that study. The first was the rapidity of ERK activation after fear conditioning. Phosphorylated ERK (pERK) was detected in lateral amygdala neurons within five minutes of training, returned to baseline levels by 15 minutes, and then increased again by one hour. The initial activation of ERK is thought to occur through the convergence onto lateral amygdala neurons of auditory thalamic inputs in response to the conditioning stimulus (tone) and somatosensory thalamic inputs in response to the unconditioned stimulus (electrical foot shock). Both inputs are required for the establishment of LTP in the lateral amygdala and the consolidation of fear conditioning (40,41).

Activation of ERK was followed within an additional few minutes by the de novo translation of STEP (37). The translation of STEP was blocked by anisomysin, not affected by actinomycin D, and blocked by inhibitors of MAPK. Importantly, neither shock alone nor tone alone led to ERK activation or STEP translation. Within minutes after the de novo synthesis of STEP, pERK levels returned to baseline levels. These results support a feedback model by which STEP regulates the duration that ERK is active. Additional modulatory inputs are likely to be involved. For example, if a dopaminergic input arrives to these same neurons, then STEP will be phosphorylated and no longer interact with ERK, leading to a more persistent pERK signal. Additional studies are needed to determine whether the infused TAT-STEP that prevented the consolidation of fear conditioning did so through its ability to block ERK signaling only, or whether it also disrupts other components of synaptic plasticity, through the regulation of STEP substrates such as Fyn or NMDA receptors.

As was mentioned above, mutations of PTPs in their catalytic domain create inactive variants that may be used as substrate-trapping proteins. This type of inactive STEP protein was used to identify a second STEP substrate, the non-receptor tyrosine kinase Fyn (Figure 3) (22). STEP interacts with Fyn through its KIM domain, although the first polyproline sequence present in STEP₆₁ is also involved in Fyn binding (22). Interestingly, the related tyrosine kinases, Src, Lyn and Pyk2, which are also present within the postsynaptic density, did not interact directly with STEP under the conditions used in this study (22). Two tyrosine residues are phosphorylated in the Src family of non-receptor kinases, and the enzymatic activity of these proteins depends upon which tyrosine is phosphorylated. STEP specifically catalyzes the dephosphorylation of Tyr⁴²⁰, leading to the inactivation of Fyn. Conversely, a second PTP (PTPα) dephosphorylates Tyr⁵³¹, and dephosphorylation of this residue activates Fyn (42,43).

The NMDA receptor is a third potential STEP substrate. The NR1 subunit was initially shown to associate with STEP through co-immunoprecipitation experiments using hippocampal tissue (10) and more recently it has been shown that NMDA receptor subunits and STEP interact directly (44). STEP regulates NMDA receptor trafficking by controlling the level of tyrosine phosphorylation of the NR2B subunit (45). Tyrosine phosphorylation of NR2B at Tyr¹⁴⁷² by Src-family members, including Fyn, is required for the movement of NMDA receptors into membranes (46,47). Dephosphorylation of the NR2B subunit at that same residue leads to endocytosis of NMDA receptors through a clathrin- and adaptor protein-2-mediated mechanism (48). Current studies are determining whether this is through the direct dephosphorylation of the NMDA receptor by STEP, an indirect effect through its ability to reduce Fyn activity and thus decrease NMDA Tyr¹⁴⁷² phosphorylation levels, or whether both mechanisms work together in a cooperative fashion (Figure 4).

Figure 4

STEP activation may lead to abnormal NMDA receptor endocytosis in Alzheimer’s disease

An initial electrophysiological study looked at the ability of STEP to regulate NMDA receptor channel properties (10). STEP affects the function of synaptic NMDA receptors in both spinal cord cultures and hippocampal CA1 pyramidal neurons. Exogenously applied STEP decreased the open probability and mean channel open time of NMDA receptors in single channel recording from excised patches of spinal cord neurons (10). Furthermore, infusing a functionally inhibitory STEP antibody increased the NMDA receptor-mediated component of synaptic responses. Because NMDA receptors are critically important for the induction of LTP, it was important to examine the role of STEP in this form of synaptic plasticity (10). Microinfusion of active STEP protein into the postsynaptic neuron blocked LTP induction at hippocampal Schaffer collateral CA1 synapses. Conversely, infusion of the functionally inhibitory antibody caused an increase in basal synaptic transmission, thereby occluding LTP induction. Thus, STEP appears to directly affect the conductance properties of NMDA receptors as well as regulating NMDA receptor trafficking, and together, these mechanisms oppose the development of synaptic plasticity.

Significance of STEP in pathological states

Recent studies have linked STEP to the cognitive decline observed in Alzheimer’s disease (45). The abnormal secretion of beta-amyloid peptide (Aβ) has been implicated in Alzheimer’s disease, and the appearance of plaques and neurofibrillary tangles have been thought to be a pathogenic cause of the disorder. A second model posits that soluble Aβ interferes with synaptic function itself and at an earlier time point (49,50).

Snyder et al. (45) directly tested the synaptic hypothesis of Alzheimer’s disease by asking whether Aβ might disrupt NMDA receptor trafficking. Aβ promoted the endocytosis of NMDA receptors in hippocampal cultures without affecting the total level of these receptors. Moreover, a similar decreased level of glutamate receptors was found on neuronal plasma membranes in a mouse model of Alzheimer’s disease that secretes high levels of Aβ. As mentioned above, exocytosis and endocytosis of NMDA receptors are regulated, in part, by tyrosine phosphorylation of the NR2B subunit. Aβ-induced endocytosis of NMDA receptors was blocked by preincubation of hippocampal cultures with the substrate-trapping TAT-STEP protein. The implication was that STEP might normally be involved in the endocytosis of glutamate receptors, and that it was being inappropriately activated by Aβ.

The study went on to determine the signaling pathway by which Aβ-induced endocytosis occurred (Figure 4). Aβ bound to the α7 nicotinic acetylcholine receptor (α7nAChR), leading to Ca²⁺ influx and activation of calcineurin. Calcineurin activity resulted in dephosphorylation of the regulatory serine within the KIM domain of STEP, thereby activating it. Active STEP could now dephosphorylate Fyn and/or NR2B, promoting endocytosis of NMDA receptors. A second study has also implied a role for STEP in the actions of Aβ. In a different transgenic mouse model of Alzheimer’s disease, the investigators found increased levels of α7 nAChR, decreased active Fyn, and increased STEP protein levels in the dentate gyrus (51).

It remains to be determined exactly how the substrate trapping TAT-STEP prevents NMDA receptor endocytosis. Given the fact that it acts as a substrate-binding protein, one possible model is that TAT-STEP binds to the Tyr¹⁴⁷² site and blocks normal dephosphorylation of that site. The increased tyrosine phosphorylation of NR2B would promote its localization at the plasma membrane. These observations support the hypothesis that one of the earliest pathological events in Alzheimer’s disease is a tyrosine dephosphorylation-mediated endocytosis of glutamate receptors, and that this process may be involved in the progressive cognitive loss in affected patients. Because STEP is an integral part of the signaling pathway between Aβ and the NMDA receptor, inhibiting STEP activity is a potential avenue for new therapeutic agents in the treatment of Alzheimer’s disease.

Conclusion

STEP regulates the activity of the MAPKs, Fyn, and NMDA receptors, and by regulating these substrates, it opposes the development of synaptic plasticity. Future work will determine whether STEP also plays a role in memory consolidation in brain regions outside of the amygdala. Additional studies should focus on STEP’s contribution to CNS disorders, because of its critical substrates and high levels of expression in the striatum. As Confucius said “A journey of a thousand miles begins with a single step.” The possibilities are only just beginning to be recognized and the path that clarifies the roles of STEP will be an exciting journey.

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