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TABLE 2.

Relative expression of upregulated proteins and their corresponding mRNA levels in response to 24-h chromate exposure

GeneGene product (functional category no.e)Transcriptomics [Cr(VI)/Con ratio]aProteomics
Control
24-h chromate exposure
% CoveragebNo. of unique peptides/ proteincAvg no. of spectrad% CoverageNo. of unique peptides/ proteinAvg no. of spectra
SO0401Alcohol dehydrogenase, zinc containing (7)1.20.00045.1911
SO0644Prophage MuSo1 DNA transposition protein (10)11.90.00072.41525
SO0795Conserved hypothetical protein (9)0.805.92149.71616.5
SO2654Putative transposase (10)1.50.00036.91916
SO2655Prophage MuSo2 DNA transposition protein (10)3.616.03257.51857.5
SO2660Conserved hypothetical protein (9)14.132.55683.524145
SO2663Conserved hypothetical protein (9)8.50.00058.71236
SO2667Conserved hypothetical protein (9)19.70.00048.0810
SO2673Hypothetical protein (9)10.80.00055.487.5
SO2685Putative prophage MuSo2 major head subunit (10)24.522.73251.81217.5
SO2688Hypothetical protein (9)24.50.00042.0106.5
SO2834Anaerobic ribonucleoside-triphosphate reductase, NrdD (13)1.916.68837.22030
SO2940Prophage LambdaSo host specificity protein J (10)5.43.72149.649107
SO2942Hypothetical protein (9)42.40.00059.61119
SO2944Hypothetical protein (9)44.70.00065.32696.5
SO2945Hypothetical protein (9)129.826.646.567.81578
SO2946Hypothetical protein (9)37.20.00058.01065.5
SO2948Prophage LambdaSo tail assembly protein K (10)23.70.00051.987.5
SO2949Prophage LambdaSo minor tail protein L (10)5.60.00050.61023.5
SO2950Hypothetical protein (9)10.90.00053.4923.5
SO2951Hypothetical protein (9)48.516.95469.241172.5
SO2952Prophage LambdaSo minor tail protein M (10)28.60.00082.0614.5
SO2953Prophage LambdaSo tail length tape measure protein H (10)33.44.22258.55174
SO2955Conserved hypothetical protein (9)74.914.011.546.3720
SO2956Prophage LambdaSo major tail protein V (10)61.90.00080.9857.5
SO2963Prophage LambdaSo major capsid protein, HK97 family (10)168.036.6121380.832183.5
SO2964ClpP protease family protein (11)57.70.00023.6711
SO2965Prophage LambdaSo portal protein, HK97 family (10)106.014.82141.91416
SO2979Hypothetical protein (9)11.70.00045.078.5
SO2980Hypothetical protein (9)8.90.00069.11112.5
SO2982Hypothetical protein (9)8.20.00049.778.5
SO2988Conserved hypothetical protein (9)4.269.276.595.32384.5
SO2993Putative prophage LambdaSo type II DNA modification methyltransferase (10)3.30.00067.21942.5
SO3001Hypothetical protein (9)8.40.00080.6928
SO3004Putative prophage LambdaSo DNA modification methyltransferase (10)2.40.00068.22151.5
SO3008Hypothetical protein (9)2.00.00056.2610.5
SO3013Site-specific recombinase, phage integrase family (6)1.40.00024.31110.5
SO3019Anthranilate synthase component I, TrpE (1)1.35.92145.61932
SO3020Glutamine amidotransferase, TrpG (1)2.50.00051.068.5
SO3022Isomerase, TrpC/F (1)1.613.052.545.21933.5
SO3061DNA topoisomerase III, TopB (6)1.38.03337.91816
SO3183Perosamine synthetase-related protein (18)3.312.732.546.81012.5
SO3185Polysaccharide biosynthesis protein (3)3.49.52155.91214.5
SO3189Polysaccharide biosynthesis protein (3)2.228.27970.91834.5
SO3315Conserved hypothetical protein TIGR00048 (9)0.800.00036.5109.5
SO3726Sulfate adenylyltransferase, subunit I, CysN (5)2.414.73445.91422.5
SO3727Sulfate adenylyltransferase, subunit 2, CysD (5)2.216.642.554.61123.5
SO3737Sulfite reductase (NADPH) hemoprotein beta component, CysI (5)2.13.72145.71727
SO3797Peptidase, U32 family (11)1.00.00028.11010.5
SO4265Type I restriction-modification system, M subunit, HsdM-2 (6)1.122.966.552.91720.5
SO4309Diaminopimelate decarboxylase, LysA (1)0.7011.13246.41116.5
SO4343Aminotransferase, class V (18)1.70.00059.31424
SO4686NAD-dependent epimerase/dehydratase family protein (3)1.10.00050.1107
SOA0003Putative type II restriction endonuclease (6)0.7016.731.550.91723
SOA0004Type II DNA modification methyltransferase (6)0.9013.04454.92444
SOA0160Putative esterase (18)0.7030.567.563.41121
aRelative gene expression (induction) is presented as the mean ratio of the fluorescence intensity of Cr(VI)-exposed cells (experimental) to control (nonexposed; Con) cells.
bTotal sequence coverage from replicate analyses.
cTotal number of unique peptides identified per protein from replicate analyses.
dAverage number of spectra identified per protein from replicate analyses.
eFrom Table Table11.