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Structural Organization of the 19S Proteasome Lid: Insights from MS of Intact Complexes
Michal Sharon, Thomas Taverner, Xavier I Ambroggio, Raymond J Deshaies, Carol V Robinson
PLoS Biol. 2006 August; 4(8): e267. Published online 2006 August 1. doi: 10.1371/journal.pbio.0040267
PMCID:
PMC1523230
Abstract Full Text PDF–1.1M
 Is Cited by the Following 24 Articles in this Archive:
Interactions of Kid–Kis toxin–antitoxin complexes with the parD operator-promoter region of plasmid R1 are piloted by the Kis antitoxin and tuned by the stoichiometry of Kid–Kis oligomers
Maria C. Monti, Ana M. Hernández-Arriaga, Monique B. Kamphuis, Juan López-Villarejo, Albert J. R. Heck, Rolf Boelens, Ramón Díaz-Orejas, Robert H. H. van den Heuvel
Nucleic Acids Res. 2007 March; 35(5): 1737–1749. Published online 2007 February 21. doi: 10.1093/nar/gkm073
PMCID:
PMC1865072
Abstract Full Text PDF–4.1M Supplementary Material
High throughput protein-protein interaction data: clues for the architecture of protein complexes
James R Krycer, Chi Nam Ignatius Pang, Marc R Wilkins
Proteome Sci. 2008; 6: 32. Published online 2008 November 26. doi: 10.1186/1477-5956-6-32
PMCID:
PMC2621150
Abstract Full Text PDF–772K Supplementary Material
Sem1 is a functional component of the nuclear pore complex–associated messenger RNA export machinery
Marius Boulos Faza, Stefan Kemmler, Sonia Jimeno, Cristina González-Aguilera, Andrés Aguilera, Ed Hurt, Vikram Govind Panse
J Cell Biol. 2009 March 23; 184(6): 833–846. doi: 10.1083/jcb.200810059
PMCID:
PMC2699155
Abstract Full Text PDF–2.5M
Isoforms of U1-70k Control Subunit Dynamics in the Human Spliceosomal U1 snRNP
Helena Hernández, Olga V. Makarova, Evgeny M. Makarov, Nina Morgner, Yutaka Muto, Daniel Pomeranz Krummel, Carol V. Robinson
PLoS One. 2009; 4(9): e7202. Published online 2009 September 28. doi: 10.1371/journal.pone.0007202
PMCID:
PMC2747018
Abstract Full Text PDF–1.1M Supplementary Material
Some Assembly Required: Dedicated Chaperones in Eukaryotic Proteasome Biogenesis
Andrew R. Kusmierczyk, Mark Hochstrasser
Biol Chem. Author manuscript; available in PMC 2009 September 1.
Published in final edited form as: Biol Chem. 2008 September; 389(9): 1143–1151. doi: 10.1515/BC.2008.130
PMCID:
PMC2650809
Abstract Full Text PDF–674K
The structural dynamics of macromolecular processes
Daniel Russel, Keren Lasker, Jeremy Phillips, Dina Schneidman-Duhovny, Javier A. Velázquez-Muriel, Andrej Sali
Curr Opin Cell Biol. Author manuscript; available in PMC 2010 February 1.
Published in final edited form as: Curr Opin Cell Biol. 2009 February; 21(1): 97–108. Published online 2009 February 14. doi: 10.1016/j.ceb.2009.01.022
PMCID:
PMC2774249
Abstract Full Text PDF–1.1M
A Genetic Interaction Map of RNA Processing Factors Reveals Links Between Sem1/Dss1-Containing Complexes and mRNA Export and Splicing
Gwendolyn M. Wilmes, Megan Bergkessel, Sourav Bandyopadhyay, Michael Shales, Hannes Braberg, Gerard Cagney, Sean R. Collins, Gregg B. Whitworth, Tracy L. Kress, Jonathan S. Weissman, Trey Ideker, Christine Guthrie, Nevan J. Krogan
Mol Cell. Author manuscript; available in PMC 2009 December 5.
Published in final edited form as: Mol Cell. 2008 December 5; 32(5): 735–746. doi: 10.1016/j.molcel.2008.11.012
PMCID:
PMC2644724
Abstract Full Text PDF–2.8M Supplementary Material
Electron microscopic evidence in support of alpha-solenoid models of proteasomal subunits, Rpn1 and Rpn2
Grégory Effantin, Rina Rosenzweig, Michael H. Glickman, Alasdair C. Steven
J Mol Biol. Author manuscript; available in PMC 2010 March 13.
Published in final edited form as: J Mol Biol. 2009 March 13; 386(5): 1204–1211. Published online 2009 January 27. doi: 10.1016/j.jmb.2009.01.039
PMCID:
PMC2671960
Abstract Full Text PDF–1.6M
Mapping the binding site of snurportin 1 on native U1 snRNP by cross-linking and mass spectrometry
Eva Kühn-Hölsken, Christof Lenz, Achim Dickmanns, He-Hsuan Hsiao, Florian M. Richter, Berthold Kastner, Ralf Ficner, Henning Urlaub
Nucleic Acids Res. 2010 September; 38(16): 5581–5593. Published online 2010 April 26. doi: 10.1093/nar/gkq272
PMCID:
PMC2938196
Abstract Full Text PDF–5.8M
Receiver domains control the active state stoichiometry of Aquifex aeolicus σ54 activator NtrC4, as revealed by electrospray mass spectrometry
Joseph D. Batchelor, Harry J. Sterling, Eunmi Hong, Evan R. Williams, David E. Wemmer
J Mol Biol. Author manuscript; available in PMC 2010 October 30.
Published in final edited form as: J Mol Biol. 2009 October 30; 393(3): 634–643. Published online 2009 August 21. doi: 10.1016/j.jmb.2009.08.033
PMCID:
PMC2763505
Abstract Full Text PDF–1.7M
The Translation Initiation Factor 3f (eIF3f) Exhibits a Deubiquitinase Activity Regulating Notch Activation
Julien Moretti, Patricia Chastagner, Stefano Gastaldello, Sara F. Heuss, Annette M. Dirac, René Bernards, Maria G. Masucci, Alain Israël, Christel Brou
PLoS Biol. 2010 November; 8(11): e1000545. Published online 2010 November 23. doi: 10.1371/journal.pbio.1000545
PMCID:
PMC2990700
Abstract Full Text PDF–1.4M Supplementary Material
The beginning of a beautiful friendship: Cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes
Juri Rappsilber
J Struct Biol. 2011 March; 173(3): 530–540. doi: 10.1016/j.jsb.2010.10.014
PMCID:
PMC3043253
Abstract Full Text
Dual function of Rpn5 in two PCI complexes, the 26S proteasome and COP9 signalosome
Zanlin Yu, Oded Kleifeld, Avigail Lande-Atir, Maisa Bsoul, Maya Kleiman, Daria Krutauz, Adam Book, Richard D. Vierstra, Kay Hofmann, Noa Reis, Michael H. Glickman, Elah Pick
Mol Biol Cell. 2011 April 1; 22(7): 911–920. doi: 10.1091/mbc.E10-08-0655
PMCID:
PMC3069016
Abstract Full Text PDF–1.2M Supplementary Material
Assembly, Structure and Function of the 26S proteasome
Lynn Bedford, Simon Paine, Paul W. Sheppard, R. John Mayer, Jeroen Roelofs
Trends Cell Biol. Author manuscript; available in PMC 2011 July 1.
Published in final edited form as: Trends Cell Biol. 2010 July; 20(7): 391–401. Published online 2010 April 26. doi: 10.1016/j.tcb.2010.03.007
PMCID:
PMC2902798
Abstract Full Text PDF–1.4M
Analyzing Large Protein Complexes by Structural Mass Spectrometry
Noam Kirshenbaum, Izhak Michaelevski, Michal Sharon
J Vis Exp. 2010; (40): 1954. Published online 2010 June 19. doi: 10.3791/1954
PMCID:
PMC3149987
Abstract Full Text PDF–298K
Not4 E3 Ligase Contributes to Proteasome Assembly and Functional Integrity in Part through Ecm29
Olesya O. Panasenko, Martine A. Collart
Mol Cell Biol. 2011 April; 31(8): 1610–1623. doi: 10.1128/MCB.01210-10
PMCID:
PMC3126335
Abstract Full Text PDF–1.7M Supplementary Material
Structure characterization of the 26S proteasome
Ho Min Kim, Yadong Yu, Yifan Cheng
Biochim Biophys Acta. Author manuscript; available in PMC 2012 February 1.
Published in final edited form as: Biochim Biophys Acta. 2011 February; 1809(2): 67–79. Published online 2010 August 26. doi: 10.1016/j.bbagrm.2010.08.008
PMCID:
PMC3010250
Abstract Full Text PDF–1.3M
Structural basis for the assembly and nucleic acid binding of the TREX-2 transcription-export complex
Andrew M. Ellisdon, Lyudmila Dimitrova, Ed Hurt, Murray Stewart
Nat Struct Mol Biol. Author manuscript; available in PMC 2012 September 1.
Published in final edited form as: Nat Struct Mol Biol. 2012 February 19; 19(3): 328–336. doi: 10.1038/nsmb.2235
PMCID:
PMC3303126
Abstract Full Text PDF–1.0M Supplementary Material
Recognition and Processing of Ubiquitin-Protein Conjugates by the Proteasome
Daniel Finley
Annu Rev Biochem. Author manuscript; available in PMC 2012 August 30.
Published in final edited form as: Annu Rev Biochem. 2009; 78: 477–513. doi: 10.1146/annurev.biochem.78.081507.101607
PMCID:
PMC3431160
Abstract Full Text PDF–1.6M
Mass Spectrometry: an Approach Come-of-Age for Structural and Dynamical Biology
Justin L.P. Benesch, Brandon T. Ruotolo
Curr Opin Struct Biol. Author manuscript; available in PMC 2012 October 1.
Published in final edited form as: Curr Opin Struct Biol. 2011 October; 21(5): 641–649. Published online 2011 August 29. doi: 10.1016/j.sbi.2011.08.002
PMCID:
PMC3193349
Abstract Full Text PDF–1.3M
Structural and functional characterization of Rpn12 identifies residues required for Rpn10 proteasome incorporation
Jonas Boehringer, Christiane Riedinger, Konstantinos Paraskevopoulos, Eachan O. D. Johnson, Edward D. Lowe, Christina Khoudian, Dominique Smith, Martin E. M. Noble, Colin Gordon, Jane A. Endicott
Biochem J. 2012 November 15; 448(Pt 1): 55–65. Prepublished online 2012 August 20. Published online 2012 October 18. doi: 10.1042/BJ20120542
PMCID:
PMC3481250
Abstract Full Text PDF–2.3M Supplementary Material
Ion mobility–mass spectrometry for structural proteomics
Yueyang Zhong, Suk-Joon Hyung, Brandon T Ruotolo
Expert Rev Proteomics. Author manuscript; available in PMC 2012 November 1.
Published in final edited form as: Expert Rev Proteomics. 2012; 9(1): 47–58. doi: 10.1586/epr.11.75
PMCID:
PMC3313071
Abstract Full Text PDF–2.2M
Incorporation of the Rpn12 Subunit Couples Completion of Proteasome Regulatory Particle Lid Assembly to Lid-Base Joining
Robert J. Tomko, Jr., Mark Hochstrasser
Mol Cell. Author manuscript; available in PMC 2012 December 23.
Published in final edited form as: Mol Cell. 2011 December 23; 44(6): 907–917. doi: 10.1016/j.molcel.2011.11.020
PMCID:
PMC3251515
Abstract Full Text PDF–4.9M Supplementary Material
Characterization and Quantification of Intact 26S Proteasome Proteins by Real-Time Measurement of Intrinsic Fluorescence Prior to Top-down Mass Spectrometry
Jason D. Russell, Mark Scalf, Adam J. Book, Daniel T. Ladror, Richard D. Vierstra, Lloyd M. Smith, Joshua J. Coon
PLoS One. 2013; 8(3): e58157. Published online 2013 March 11. doi: 10.1371/journal.pone.0058157
PMCID:
PMC3594244
Abstract Full Text PDF–910K Supplementary Material