Home
|
Overview
|
Journals
|
Submit Manuscript
|
Contact Us
|
Français
Enter Your Search:
Search tips
Search criteria
Articles
Journal titles
Advanced
Citations
The design of transcription-factor binding sites is affected by combinatorial regulation
Yonatan Bilu, Naama Barkai
Genome Biol. 2005; 6(12): R103.
Published online 2005 December 2.
doi: 10.1186/gb-2005-6-12-r103
PMCID:
PMC1414079
Abstract
Full Text
PDF–219K
Supplementary Material
Is Cited by the Following 14 Articles in this Archive:
Origin of Co-Expression Patterns in
E.coli
and
S.cerevisiae
Emerging from Reverse Engineering Algorithms
Mattia Zampieri, Nicola Soranzo, Daniele Bianchini, Claudio Altafini
PLoS ONE. 2008; 3(8): e2981.
Published online 2008 August 20.
doi: 10.1371/journal.pone.0002981
PMCID:
PMC2500178
Abstract
Full Text
PDF–833K
Supplementary Material
Inferring condition-specific transcription factor function from DNA binding and gene expression data
Rachel Patton McCord, Michael F Berger, Anthony A Philippakis, Martha L Bulyk
Mol Syst Biol. 2007; 3: 100.
Published online 2007 April 17.
doi: 10.1038/msb4100140
Correction in:
Mol Syst Biol.
2010;
6
: 362.
PMCID:
PMC1865582
Abstract
Full Text
PDF–355K
Correction
Evidence of Highly Regulated Genes (in-Hubs) in Gene Networks of
Saccharomyces Cerevisiae
Jesper Lundström, Johan Björkegren, Jesper Tegnér
Bioinform Biol Insights. 2008; 2: 307–316.
Published online 2008 July 14.
PMCID:
PMC2735949
Abstract
Full Text
PDF–531K
Supplementary Material
Impact of DNA-binding position variants on yeast gene expression
Krishna B. S. Swamy, Chung-Yi Cho, Sufeng Chiang, Zing Tsung-Yeh Tsai, Huai-Kuang Tsai
Nucleic Acids Res. 2009 November; 37(21): 6991–7001.
Published online 2009 September 18.
doi: 10.1093/nar/gkp743
PMCID:
PMC2790881
Abstract
Full Text
PDF–463K
Supplementary Material
The role of DNA-binding specificity in the evolution of bacterial regulatory networks
Irma Lozada-Chávez, Vladimir Espinosa Angarica, Julio Collado-Vides, Bruno Contreras-Moreira
J Mol Biol.
Author manuscript; available in PMC 2009 June 6.
Published in final edited form as:
J Mol Biol.
2008 June 6;
379
(3)
: 627–643.
Published online 2008 April 9.
doi: 10.1016/j.jmb.2008.04.008
PMCID:
PMC2491489
Abstract
Full Text
PDF–1.1M
Supplementary Material
Redundancy and the Evolution of
Cis
-Regulatory Element Multiplicity
Tiago Paixão, Ricardo B. R. Azevedo
PLoS Comput Biol. 2010 July; 6(7): e1000848.
Published online 2010 July 8.
doi: 10.1371/journal.pcbi.1000848
PMCID:
PMC2900288
Abstract
Full Text
PDF–425K
Supplementary Material
Mechanisms and Evolution of Control Logic in Prokaryotic Transcriptional Regulation
Sacha A. F. T. van Hijum, Marnix H. Medema, Oscar P. Kuipers
Microbiol Mol Biol Rev. 2009 September; 73(3): 481–509.
doi: 10.1128/MMBR.00037-08
PMCID:
PMC2738135
Abstract
Full Text
PDF–4.4M
Protein evolution in yeast transcription factor subnetworks
Yong Wang, Eric A. Franzosa, Xiang-Sun Zhang, Yu Xia
Nucleic Acids Res. 2010 October; 38(18): 5959–5969.
Published online 2010 May 13.
doi: 10.1093/nar/gkq353
PMCID:
PMC2952844
Abstract
Full Text
PDF–457K
Supplementary Material
Epistatic relationships reveal the functional organization of yeast transcription factors
Jiashun Zheng, Joris J Benschop, Michael Shales, Patrick Kemmeren, Jack Greenblatt, Gerard Cagney, Frank Holstege, Hao Li, Nevan J Krogan
Mol Syst Biol. 2010; 6: 420.
Published online 2010 October 19.
doi: 10.1038/msb.2010.77
PMCID:
PMC2990640
Abstract
Full Text
PDF–3.5M
Supplementary Material
Different sequence signatures in the upstream regions of plant and animal tRNA genes shape distinct modes of regulation
Gong Zhang, Radoslaw Lukoszek, Bernd Mueller-Roeber, Zoya Ignatova
Nucleic Acids Res. 2011 April; 39(8): 3331–3339.
Published online 2010 December 7.
doi: 10.1093/nar/gkq1257
PMCID:
PMC3082873
Abstract
Full Text
PDF–3.0M
Supplementary Material
Integrated Genome-Scale Prediction of Detrimental Mutations in Transcription Networks
Mirko Francesconi, Rob Jelier, Ben Lehner
PLoS Genet. 2011 May; 7(5): e1002077.
Published online 2011 May 26.
doi: 10.1371/journal.pgen.1002077
PMCID:
PMC3102745
Abstract
Full Text
PDF–1001K
Supplementary Material
DNA Sequence Preferences of Transcriptional Activators Correlate More Strongly than Repressors with Nucleosomes
Varodom Charoensawan, Sarath Chandra Janga, Martha L. Bulyk, M. Madan Babu, Sarah A. Teichmann
Mol Cell. 2012 July 27; 47(2): 183–192.
doi: 10.1016/j.molcel.2012.06.028
PMCID:
PMC3566590
Abstract
Full Text
Supplementary Material
Uncovering the interplay between DNA sequence preferences of transcription factors and nucleosomes
Sarah A. Teichmann, Philip A. Wigge, Varodom Charoensawan
Cell Cycle. 2012 December 15; 11(24): 4487–4488.
doi: 10.4161/cc.22666
PMCID:
PMC3562284
Full Text
PDF–309K
Conservation of Expression and Sequence of Metabolic Genes Is Reflected by Activity Across Metabolic States
Yonatan Bilu, Tomer Shlomi, Naama Barkai, Eytan Ruppin
PLoS Comput Biol. 2006 August; 2(8): e106.
Prepublished online 2006 July 6.
Published online 2006 August 18.
doi: 10.1371/journal.pcbi.0020106
PMCID:
PMC1550272
Abstract
Full Text
PDF–247K
Supplementary Material
