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J Clin Invest. May 1, 2006; 116(5): 1346–1359.
Published online Mar 16, 2006. doi:  10.1172/JCI27414
PMCID: PMC1401486
Nephrin ectodomain engagement results in Src kinase activation, nephrin phosphorylation, Nck recruitment, and actin polymerization
Rakesh Verma,1 Iulia Kovari,1 Abdul Soofi,1 Deepak Nihalani,1 Kevin Patrie,1 and Lawrence B. Holzman1,2
1Division of Nephrology, University of Michigan Medical School, Ann Arbor, Michigan, USA. 2Department of Veterans Affairs, Ann Arbor, Michigan, USA.
Address correspondence to: Lawrence B. Holzman, University of Michigan Medical School, Division of Nephrology, 1560 Medical Science Research Building II, Ann Arbor, Michigan 48109-0676, USA. Phone: (734) 764-3157; Fax: (734) 763-0982; E-mail: lholzman/at/ .
Received November 15, 2005; Accepted February 7, 2006.
A properly established and maintained podocyte intercellular junction, or slit diaphragm, is a necessary component of the selective permeability barrier of the kidney glomerulus. The observation that mutation or deletion of the slit diaphragm transmembrane protein nephrin results in failure of podocyte foot process morphogenesis and concomitant proteinuria first suggested the hypothesis that nephrin serves as a component of a signaling complex that directly integrates podocyte junctional integrity with cytoskeletal dynamics. The observations made herein provide the first direct evidence to our knowledge for a phosphorylation-mediated signaling mechanism by which this integrative function is derived. Our data support the model that during podocyte intercellular junction formation, engagement of the nephrin ectodomain induces transient Fyn catalytic activity that results in nephrin phosphorylation on specific nephrin cytoplasmic domain tyrosine residues. We found that this nephrin phosphorylation event resulted in recruitment of the SH2–SH3 domain–containing adapter protein Nck and assembly of actin filaments in an Nck-dependent fashion. Considered in the context of the role of nephrin family proteins in other organisms and the integral relationship of actin dynamics and junction formation, these observations establish a function for nephrin in regulating actin cytoskeletal dynamics.
Glomerular visceral epithelial cells play a central role in maintaining the selective filtration barrier of the renal glomerulus. These cells are also termed podocytes to describe the foot-like appearance of numerous interdigitating foot processes that arise from their cell bodies and surround glomerular capillary walls. Glomerular filtrate passes across the specialized intercellular junction — also termed the slit diaphragm — formed at the interface of these interdigitating foot processes.
In response to injury, podocytes undergo a dramatic change in morphology termed foot process effacement resulting from alteration in cytoskeletal and intercellular junctional architecture. By electron microscopy, effacement is manifested by retraction and spreading of podocyte processes. Effacement is a fluid and reversible process that directly correlates with the development of proteinuria both in human disease and in experimental models.
The cellular and molecular mechanisms that integrate podocyte morphology and filter integrity are incompletely defined. Recent investigations have focused on identifying and characterizing the interrelationships and functions of the molecular components of the foot process intercellular junction because several of these components are necessary for development of normal podocyte structure and filter integrity (reviewed in refs. 1, 2).
Nephrin is encoded by NPHS1, the gene mutated in congenital nephrotic syndrome of the Finnish type, a rare autosomal-recessive developmental disorder manifested by failure of foot process morphogenesis (3). At birth, this mutation presents with foot process effacement and heavy proteinuria. Deletion of nephrin by homologous recombination in the mouse results in a similar developmental phenotype (46). In the kidney, nephrin is expressed only in podocytes, where it is first expressed at nascent intercellular junctions that form as processes emerge from the basolateral aspect of epithelial podocyte precursors during glomerulogenesis (7). In the mature podocyte, nephrin is targeted to the foot process intercellular junction, where it has been suggested that it contributes to the mechanical filter presumed to function at the slit diaphragm (7, 8).
Recent work using genetic experimental approaches in Caenorhabditis elegans and Drosophila melanogaster has suggested that nephrin and its ligand Neph1 function in specifying positional or polarized relationships among cells in complex tissues (911); by analogy, this protein complex might function in a similar fashion in the developing podocyte by transducing outside-in signals that integrate junctional and cytoskeletal dynamics and contribute to appropriate tissue morphogenesis. Several observations suggest that nephrin and the complex of proteins with which it is physically associated serve as a signaling nexus that integrate intercellular junction and cytoskeletal dynamics (12). This complex presumably associates with the foot process’s subcortical actin cytoskeleton (13) via intermediary proteins that include ZO-1 (14), CD2ap (15), and CASK (16). While it is unlikely that all of the components of the nephrin-associated protein complex have been defined, it is remarkable that deletion in mice of nephrin-interacting proteins including Neph1, podocin, and CD2ap results in the development of proteinuria and alteration of podocyte cytoskeletal architecture (15, 1719).
Nephrin is the target of multiple phosphorylation events (20, 21). At least some of these phosphorylation events are mediated through the Src family kinase (SFK) Fyn (2022). Fyn resides in podocyte lipid rafts that are specialized cholesterol-rich membrane microdomains in which nephrin, podocin, and Neph1 are also found (22). Fyn can directly bind to and phosphorylate nephrin in situ, and moreover, Fyn null mice exhibit proteinuria and abnormalities in the development of the foot process intercellular junction (23). Based on these observations, we hypothesized that Fyn-mediated tyrosine phosphorylation of nephrin initiates signaling events that might dynamically integrate podocyte actin cytoskeleton dynamics and podocyte intercellular junction formation.
Nephrin is phosphorylated by Fyn on multiple tyrosine residues.
Nephrin is tyrosine phosphorylated in situ by the SFK Fyn (20, 21, 23). In order to study the biological significance of this observation in detail, Fyn-dependent phosphorylated tyrosine (PY) residues were initially mapped. Recombinant glutathione S-transferase–nephrin cytoplasmic domain (GST-nephrinCD) expressed in and purified from bacteria was phosphorylated in vitro by recombinant Fyn. NephrinCD phosphorylated in this fashion was isolated and trypsinized, and tryptic peptides were resolved by 2-dimensional (2D) chromatography. Given the presence of 10 tyrosine residues in mouse nephrinCD, it was not unexpected that multiple radiolabeled nephrin tryptic phosphopeptides were observed (Figure (Figure1B).1B). Therefore, systematic mutagenesis of each tyrosine residue located within the nephrinCD was performed to identify Fyn-dependent phosphorylation sites. Where single tryptic peptides contained multiple tyrosine residues, single, double, and triple combination tyrosine mutants were created. Composite analysis allowed the identification of 5 Fyn-dependent PY residues on nephrinCD as summarized in Figure Figure1J1J and Table Table1.1. Y1153 and Y1154 were present on the same tryptic peptide, and both were phosphorylated by Fyn. Similarly, Y1198, Y1208, and Y1218 were located on the same tryptic fragment; however, only Y1198 and Y1208 were phosphorylated by Fyn.
Figure 1
Figure 1
Identification of Fyn-dependent tyrosine phosphorylation sites on nephrin.
Table 1
Table 1
Fyn-dependent PY mouse residues
Since nephrin and Fyn reside in lipid rafts (Triton X-100–insoluble membrane fraction, or detergent-resistant membrane [DRM]) in podocyte foot processes, we sought to confirm that the pattern of nephrin tyrosine residue phosphorylation identified in vitro occurred in situ in a similar fashion. For this purpose, DRM obtained by flotation gradient centrifugation from isolated mouse glomeruli was resuspended and incubated in a kinase buffer containing [32P-γ]ATP. This DRM was re-extracted with RIPA buffer, and nephrin was immunoprecipitated and isolated before analysis by tryptic phosphopeptide 2D mapping. Comparison of the mobility of tryptic phosphopeptides obtained by this approach to that obtained using phosphorylated recombinant nephrinCD showed similar mobility of peptides in which Fyn-dependent PY residues had been identified (Figure (Figure1,1, A and B). It was concluded that mouse nephrin tyrosine residues 1153, 1154, 1198, 1208, and 1225 were phosphorylated by Fyn. Phosphorylation of additional tyrosine residues in the nephrinCD by Fyn or yet unidentified additional protein kinases is possible but could not be confirmed by this analysis.
Development and characterization of a phosphospecific nephrin antibody.
Primary sequence analysis revealed that Y1208 sits within a YDEV motif typical of a functional SH2-binding domain. This site is conserved among mouse, rat, and human species. To develop a reagent that would be useful for investigating nephrin phosphorylation–mediated signaling that might involve this domain, an affinity-purified rabbit polyclonal serum was raised against a 10-residue mouse nephrin phosphopeptide as described in Methods. As shown in Figure Figure2,2, this antibody was useful in both immunoblotting and in immunohistochemistry assays. In immunoblotting experiments, anti–P-nephrin antibody specifically recognized nephrin expressed in COS7 cells or endogenous nephrin extracted from isolated mouse glomeruli only after the cells or kidney were pretreated with pervanadate, a nonspecific protein phosphatase inhibitor (Figure (Figure2,2, A and B). A similar result was obtained by indirect immunofluorescence (Figure (Figure2E);2E); here, anti–P-nephrin antibody identified glomeruli in paraffin-embedded adult mouse kidney sections only after kidneys were perfused with pervanadate prior to harvest.
Figure 2
Figure 2
Characterization of a P-nephrin polyclonal antibody.
While mouse nephrin Y1191 had not been identified as being phosphorylated by Fyn in the experiments described above, this tyrosine residue resides within a YDEV motif identical to that of Y1208. Therefore, to confirm the epitope specificity of this antibody, plasmids encoding wild-type nephrin or nephrin(Y1191F), nephrin(Y1208F), or nephrin(Y1191/1208F) mutants were expressed in COS7 cells that were or were not treated with pervanadate prior to cell lysis (Figure (Figure2C).2C). Using immunoblotting, P-nephrin antibody identified wild-type nephrin, nephrin(Y1191F), and nephrin(Y1208F), but not the nephrin(Y1191/1208F) double mutant, when cells were pretreated with pervanadate prior to lysis. This result suggests both that Y1191 and Y1208 become phosphorylated in the presence of pervanadate and that the anti–P-nephrin antibody recognizes epitopes created when either of these tyrosine residues become phosphorylated. A similar set of experiments demonstrated that transient transfection of SYF cells (mouse embryonic fibroblasts deleted of c-Src, Fyn, and Yes) with plasmid encoding Fyn and nephrin resulted in nephrin phosphorylation at both Y1191 and Y1208 (Figure (Figure2D).2D). These experiments confirm that nephrin can be phosphorylated in cells by Fyn at Y1208 as well as that nephrin can be phosphorylated by Fyn at Y1191.
Nephrin is tyrosine phosphorylated in an SFK-dependent fashion on Y1191 and Y1208 upon engagement of its ectodomain.
As has been demonstrated in other membrane receptor complexes that reside in lipid rafts (24), it was hypothesized that engagement of the nephrin ectodomain would result in both activation of a SFK and phosphorylation of nephrin at Y1191 and Y1208. A cell culture model originally described by Lahdenpera et al. was employed to test this hypothesis (21). For these experiments, a monoclonal antibody (50A9 mAb) directed against the ectodomain of human nephrin or a nonspecific antibody of the same species, and isotype was added to the culture medium of HEK 293 cells that had been stably transfected with human nephrin (Figure (Figure3).3). Because a phosphospecific pan-Src(Y418) antibody that recognizes the autophosphorylation site within the catalytic domain of SFKs had been previously shown to correlate with SFK activity (25), this antibody was used to assay for induction of SFK activity. Indeed, engagement of the human nephrin ectodomain with the 50A9 mAb — but not control IgG — resulted in induction of SFK activity (Figure (Figure3A).3A). Concomitantly, nephrin phosphorylation at Y1191 and Y1208 (Figure (Figure3C)3C) occurred within 2 minutes after engagement of the nephrin ectodomain by addition of 50A9 (Figure (Figure3B).3B). This nephrin phosphorylation event was inhibited in the presence of PP2, a SFK-specific inhibitor. Together, these results suggest that engagement of the nephrin ectodomain results sequentially in SFK induction followed by nephrin phosphorylation within 2 SH2-binding domains at mouse nephrin Y1191 and Y1208.
Figure 3
Figure 3
Engagement of nephrin extracellular domain results in activation of Src and Fyn-dependent nephrin phosphorylation on Y1191 and Y1208.
Nephrin tyrosine phosphorylation occurs transiently during podocyte differentiation and in response to podocyte injury.
Using indirect immunofluorescence microscopy, the P-nephrin antibody was applied to newborn and adult mouse kidney sections to evaluate when and where nephrin tyrosine phosphorylation occurs in situ under physiological conditions. Foot process morphogenesis begins during the early capillary loop stage of glomerulogenesis when nephrin is first expressed on the tips of nascent budding processes that extend from the lateral walls of undifferentiated podocytes immediately adjacent to the glomerular basement membrane (7). Consistent with the localization of nephrin in podocytes during this process, P-nephrin antibody reacted with newborn kidney along a fine line at the basal aspect of the podocyte. P-nephrin antibody immunoreactivity was first observed at the early capillary loop stage. This expression was observed later than initial expression of podocalyxin, which arose on the apical aspect of podocyte precursors late in the S-shaped body phase (Figure (Figure4).4). Importantly, phosphorylation of mouse nephrin at Y1191 and Y1208 was transient in kidney, since P-nephrin antibody did not react with adult kidney sections except when kidney was perfused before fixation with pervanadate (Figure (Figure2E2E and Figures Figures44 and and5). 5).
Figure 4
Figure 4
Endogenous nephrin is recognized by P-nephrin antibody in developing but not adult glomeruli.
Figure 5
Figure 5
Nephrin is transiently tyrosine phosphorylated during foot process effacement in the protamine sulfate–induced podocyte injury model.
We speculated that the nephrin membrane protein complex participates in phosphorylation-mediated signal transduction necessary for coordinating intercellular junction formation and podocyte cytoskeletal dynamics. For this reason, it was hypothesized that podocyte injury that results in alterations in cytoskeletal dynamics would induce nephrin tyrosine phosphorylation. The rodent protamine sulfate–heparin sulfate model was employed in mice to investigate this hypothesis (26). In this model, perfusion of mouse kidneys with protamine sulfate results in foot process effacement, while subsequent perfusion with heparin sulfate results largely in restoration of normal podocyte morphology. Adult mouse kidneys were perfused with PBS, protamine sulfate, or protamine sulfate followed by heparin sulfate prior to fixation and analysis by electron microscopy or indirect immunofluorescence microscopy (Figure (Figure5).5). Control kidneys perfused with PBS exhibited podocytes with normal morphology, and, as observed earlier, control adult mouse kidneys did not react with P-nephrin antibody. Perfusion with protamine sulfate for 15 minutes induced diffuse foot process effacement and resulted in induction of P-nephrin immunoreactivity in a glomerular pattern. Remarkably, perfusion of kidneys with protamine sulfate for 15 minutes followed by perfusion with heparin sulfate for 15 minutes largely restored normal foot process morphology and resulted in markedly decreased immunoreactivity to P-nephrin relative to that observed after perfusion with protamine sulfate alone. These experiments were repeated 3 times with similar results. Together these results imply that nephrin tyrosine phosphorylation on Y1191 and Y1208 is induced transiently during podocyte effacement and that restoration of normal podocyte morphology results in attenuation of nephrin phosphorylation at these tyrosine residues.
Identification of SH2 domain–bearing proteins that associate with nephrin in a tyrosine phosphorylation–dependent fashion.
To begin to understand the functional significance of nephrin tyrosine phosphorylation, we sought to identify proteins that associate with nephrin in a tyrosine phosphorylation–dependent fashion. A pull-down strategy was devised for this purpose. Mouse nephrinCD was expressed as a GST fusion protein (GST-nephrinCD) in BL21 or TKB1 E. coli cells. TKB1 cells express a thymidine protein tyrosine kinase. For that reason, when transformed with the relevant plasmid, TKB1 cells produced GST-nephrinCD that was tyrosine phosphorylated on Y1208 and on other nephrin tyrosine residues (Figure (Figure6A).6A). To identify P-nephrin–associated proteins, this purified tyrosine-phosphorylated GST-nephrinCD bound to glutathione agarose was mixed with lysate obtained from isolated mouse glomeruli. The obtained purified complex was resolved by SDS-PAGE and immunoblotted with a panel of antibodies for proteins that contain SH2 domains (Table (Table2).2). Nonphosphorylated GST-nephrinCD served as a negative control. Using this approach, GST-nephrinCD associated with Crk, ShcA, and Nck in a tyrosine phosphorylation–dependent fashion (Figure (Figure6B6B and data not shown).
Figure 6
Figure 6
Nck associates with nephrin.
Table 2
Table 2
Antibodies to SH2-binding domain–containing proteins used in this experiment
The SH2–SH3 adapter protein Nck associates with nephrin at Y1191 and Y1208.
Because we were interested initially in identifying protein-protein interactions that occur at the putative SH2 domain–binding motifs observed at Y1191 and Y1208, the putative interaction between nephrin and Nck was investigated in additional detail. In mice, both Y1191 and Y1208 fall in the context of YDEV motifs that — relative to other SH2-binding domains — have been shown to have particularly high affinity for Nck (27). Moreover, as described in Discussion, the identification of a Nck-nephrin interaction would be consistent with our governing hypothesis that nephrin-dependent signaling — at least in part — serves to coordinate podocyte cytoskeletal dynamics since Nck is known to associate with proteins of the actin polymerization complex.
Initial experiments were directed at confirming that Nck is expressed in podocytes and that endogenous Nck associates with nephrin. Using Nck isoform–specific antibodies, both Nck1 and Nck2 were detected by immunoblotting in the lysates of a conditionally immortalized mouse podocyte cell line (28) cultured under either permissive or nonpermissive conditions (Figure (Figure7A).7A). Similarly, both Nck1 and Nck2 were detected in lysate obtained from isolated mouse glomeruli. Since nephrin is enriched in the podocyte DRM fraction, we examined whether Nck cofractionates with nephrin in DRM. Isolated mouse glomeruli were lysed at 4°C in buffer containing 1% Triton X-100, and the lysate was fractionated by flotation gradient centrifugation. Like nephrin and podocin, Nck2 (but not Nck1) was detected in the DRM fraction (Figure (Figure7B). 7B).
Figure 7
Figure 7
Nck1 and Nck2 are present in podocytes.
A series of experiments was performed to confirm the association of nephrin and Nck and to map their interacting domains. To determine whether the nephrin-Nck association is mediated by a direct interaction, purified recombinant GST-nephrinCD expressed either in BL21 cells or in TKB1 cells was mixed with recombinant GST-Nck. Nck was immunoprecipitated from these mixtures, and after resolution by SDS-PAGE, immune complexes were examined by immunoblotting for nephrin or P-nephrin (Figure (Figure8A).8A). GST-nephrinCD associated with Nck by direct protein-protein interaction only when GST-nephrinCD was phosphorylated by expression in TKB1 cells. Nck did not associate with nephrin when Nck carried a previously described point mutation that disrupts the binding affinity of its SH2 domain (29). These results were confirmed in a mammalian (see Methods) cell system in which plasmids encoding nephrin and Nck with or without Fyn were transiently expressed (Figure (Figure8B).8B). As shown above (Figure (Figure2D)2D) in a similar experiment, transient transfection of plasmid encoding Fyn resulted in nephrin phosphorylation at Y1191 and Y1208. Here nephrin associated with Nck — but not Nck deleted of its SH2 domain (NckΔSH2) — only when Fyn was present. Together, these results are consistent with the conclusion that Nck directly interacts via its SH2 domain with a functional SH2-binding domain in nephrin when that domain is tyrosine phosphorylated. For reasons discussed above, it was anticipated that the functional nephrin SH2-binding domain(s) that interact with Nck are Y1191DEV and/or Y1208DEV. As shown in Figure Figure8C,8C, tyrosine-phosphorylated wild-type nephrin, nephrin(Y1191F), and nephrin(Y1208F) interacted with Nck, while nephrin mutated at both Y1191 and Y1208 did not.
Figure 8
Figure 8
Nck binds directly with nephrin via an SH2 domain–dependent interaction.
Our previously published observations using Fyn-null mice showed that endogenous nephrin is a substrate of Fyn (23). Therefore, having demonstrated by employing in vitro techniques that nephrin and Nck interact in a SFK-dependent fashion, we sought to examine whether endogenous nephrin and Nck interact in a Fyn-dependent manner. In preliminary experiments, it was observed that isolation of glomeruli from mouse kidney by sieving induced nephrin phosphorylation on Y1191/1208 (data not shown). Using this experimental artifact to our advantage, the association of endogenous Nck and nephrin was examined. Isolated glomeruli obtained from wild-type mice were lysed in a buffer containing 1% NP-40 and 100 mM potassium iodide. In reciprocal coimmunoprecipitation experiments employing this lysate, Nck associated with nephrin (Figure (Figure8D).8D). In contrast, association of nephrin and Nck was not demonstrable when immunoprecipitated complexes were obtained from glomeruli isolated by sieving from Fyn-null mice (Figure (Figure8E). 8E).
Clustered nephrinCD becomes tyrosine phosphorylated, recruits Nck, and induces actin polymerization.
Plasma membrane recruitment of Nck to several known tyrosine-phosphorylated transmembrane proteins results in concomitant recruitment of components of the actin polymerization complex and induction of localized actin polymerization (30, 31). We sought to test the hypothesis that in a similar fashion, recruitment of Nck to nephrin at the plasma membrane induces localized actin polymerization. Toward this end, a model fashioned after that described by Rivera et al. was employed (32). A series of fusion protein constructs was created in which the CD16 extracellular domain and the CD7 transmembrane domain was coupled to either nephrinCD or control cytoplasmic domains that included the HA epitope tag and GFP (CD16/7/nephrinCD, CD16/7/HA, and CD16/7/GFP; Figure Figure9A);9A); these fusion proteins were expressed in NIH 3T3 cells by transient transfection. After 30 hours, mouse anti-CD16 antibody and a secondary anti-mouse IgG antibody were added to the culture media of live cells. This maneuver induced visible aggregation, or clustering, of CD16/7 fusion proteins on the plasma membrane (Figure (Figure9B9B and Figures Figures1010 and and11)11) and induced tyrosine phosphorylation on Y1191/1208 of CD16/7/nephrinCD (Figure (Figure9C).9C). Aggregation-induced tyrosine phosphorylation on these sites occurred within 1 minute of addition of aggregating antibodies and was dependent on SFK activity, since induction of tyrosine phosphorylation was inhibited in the presence of PP2. The observation that with aggregation CD16/7/nephrinCD became phosphorylated on Y1191/1208 predicted that Nck would be recruited to CD16/7/nephrinCD at the plasma membrane. To test this prediction, NIH 3T3 cells were cotransfected with plasmid encoding CD16/7/nephrinCD and Nck-GFP and were examined by immunofluorescence confocal microscopy. In the presence of aggregating antibody, Nck-GFP colocalized in clusters with CD16/7/nephrinCD at the plasma membrane (Figure (Figure10).10). We did not observe a similar pattern of Nck-GFP clustering at the plasma membrane when nephrinCD was substituted with an HA epitope tag or when NckΔSH2 was substituted in similar experiments. When aggregating antibody was not added to cells coexpressing CD16/7/nephrinCD and Nck-GFP, aggregation of Nck at the plasma membrane was not detected. In summary, these results suggest that clustering of nephrinCD results in nephrin tyrosine phosphorylation and recruitment of Nck to nephrin in an Nck-SH2 domain–dependent fashion.
Figure 9
Figure 9
Clustering of CD16 chimeric proteins and induction of tyrosine phosphorylation on clustered CD16/7/nephrinCD (CD16/7/NCD).
Figure 10
Figure 10
Nck is recruited to CD16/7/nephrinCD clusters at the plasma membrane.
Figure 11
Figure 11
Clustered nephrinCD induces Nck-dependent actin polymerization.
We also tested whether aggregation of CD16/7/nephrinCD was sufficient to induce localized actin polymerization in this model. Live cells expressing CD16/7/nephrinCD, Nck–cyan fluorescent protein (Nck-CFP), and actin-GFP were treated by adding aggregating antibodies to culture media; cells were then fixed and evaluated by fluorescence confocal microscopy (Figure (Figure11).11). Under these conditions, the actin cytoskeleton was dramatically altered. Discreet actin pedestals were observed as large, intensely GFP-positive foci. Invariably, these actin pedestals colocalized with CD16/7/nephrinCD clusters at the apical plasma membrane. Also noted frequently were actin tails, representing actin filaments that extended from the apical plasma membrane at sites of clustered CD16/7/nephrinCD (Figure (Figure11,11, insets). In control experiments, induction of actin polymerization at the plasma membrane was not observed when clustering antibodies were not present. Moreover, clustering of CD16/7/HA failed to induce detectable localized actin polymerization. Together these results support the conclusion that clustering of nephrin in this model is sufficient to recruit Nck to the plasma membrane and to induce actin polymerization. In a final experiment, NckΔSH2 was coexpressed with CD16/7/nephrinCD and actin-GFP to investigate whether Nck was necessary as an intermediate in clustered CD16/7/nephrinCD–induced actin polymerization. Remarkably, under these conditions, clustering of CD16/7/nephrinCD failed to induce actin polymerization (Figure (Figure11). 11).
The nephrin protein complex appears to play an important role in specifying cell junction formation by promoting interactions between specific cell types and in doing so participates in defining tissue organization. In C. elegans, nephrin and Neph1 homolog ligation is necessary for directing synapse formation between a specific neuron and its specific target epithelial tissue (9, 11). Similarly, in D. melanogaster, nephrin-Neph1 homolog interaction influences compound eye morphogenesis and patterning by specifying junction formation between appropriate cell types (10). In a potentially related fashion in the podocyte, nephrin is necessary for establishing normal podocyte foot process morphology and normal intercellular junction structure (3, 5, 15, 23, 33, 34).
In general, the dynamic process of epithelial cell junction formation is dependent on proper regulation and integration of junctional adhesion with actin cytoskeletal dynamics (35). This is a complex process, the details of which likely vary according to cell type. Nevertheless, central to this process is precisely regulated actin polymerization and organization; actin polymerization appears to provide the motive force necessary for junction formation, and disruption of the molecular machinery necessary for regulating actin cytoskeletal dynamics prevents proper junction formation (36). Therefore the nephrin family of transmembrane proteins might function in specifying junction formation in part by transducing signals that serve to regulate associated cytoskeletal dynamics proximal to the forming junction.
The observation that mutation or deletion of nephrin results in both failure of proper foot process morphogenesis and concomitant proteinuria first suggested the hypothesis that nephrin serves as a component of a signaling complex that directly integrates podocyte junctional integrity with cytoskeletal dynamics (3, 4, 6, 14). The observations made herein provide the first direct evidence to our knowledge for a tyrosine phosphorylation–mediated signaling mechanism by which this integrative function is derived. These data indicate that engagement of the nephrin ectodomain by its ligand induces SFK activity resulting in tyrosine phosphorylation of the nephrinCD on specific tyrosine residues. Subsequently, the adapter protein Nck and presumably proteins associated with Nck are recruited to phosphorylated nephrin, resulting in Nck-dependent regulation of local actin dynamics.
The discovery that Nck associated with activated nephrin and was necessary for nephrin-directed actin polymerization meshes well with the hypothesis that nephrin is one element in a mechanism that serves to integrate podocyte intercellular junction structure with cytoskeletal dynamics. As demonstrated in several systems, Nck serves as an adaptor protein that recruits to a plasma membrane locus a critical concentration of N-WASp, components of the Arp2/3 complex, and other components of the actin polymerization machinery sufficient to induce and regulate actin polymerization (3032, 3739). Similar mechanisms have been identified in a number of mammalian receptor systems including the EGF, PDGF, and T cell receptor complexes where Nck has been implicated as necessary in actin dynamics–dependent processes (30, 31, 37). A related mechanism is employed by several bacterial and viral pathogens (38, 39). For example, insertion of the enteropathogenic E. coli proteins Tir and intimin into the plasma membrane of host epithelial cells triggers robust actin pedestal formation at the plasma membrane when Tir is tyrosine phosphorylated by Fyn, creating a docking site for host cell–derived Nck and associated N-WASp (38). The nephrin receptor complex appears to employ a remarkably similar mechanism for coordinating junctional events with podocyte cytoskeletal dynamics. Like other systems, nephrin at the podocyte intercellular junction appears to recruit a high local concentration of Nck, which facilitates actin polymerization because it provides multiple docking sites for Nck and because nephrin itself is concentrated by clustering in a lipid microdomain (32).
Nephrin protein is first expressed when podocyte process formation is initiated in the podocyte precursor (7). During this event, processes emerge from the basolateral aspect of the precursor cell in a polarized fashion and appear to push into neighboring cells; here nephrin is targeted specifically to the newly forming intercellular junctions (7). Phosphorylation on mouse nephrin Y1191 and/or Y1208 occurred transiently during glomerulogenesis during this process of podocyte intercellular junction formation. Considered in the context of results obtained in cell culture, it is reasonable to hypothesize that within the glomerulus, nephrin is tyrosine phosphorylated upon ectodomain engagement during this event. Subsequent Nck recruitment to phosphorylated nephrin likely initiates directed actin polymerization and/or elongation at this site and by participating in regulating actin dynamics provides one element in a mechanism that specifies the specialized structure of the podocyte foot process and intercellular junction. Consistent with a role of Fyn in initiating this process is the observation that genetic deletion of Fyn in mice results in attenuated nephrin phosphorylation and is associated with abnormal foot process morphology (7, 23). The observation that in situ deletion of Fyn in the podocyte precluded recruitment of Nck to nephrin strengthens the conclusion that this pathway is operative in nature.
Phosphorylation of nephrin Y1191/1208 during glomerulogenesis is transient since nephrin does not remain phosphorylated on these sites in the fully differentiated adult glomerulus. What does the transient nature of phosphorylation on these residues suggest about the function of Nck in this system? While investigation of this process is required, it is possible that tyrosine phosphorylation–dependent Nck recruitment might be necessary only during active actin polymerization or elongation that occurs during junction formation. Like similar junctional receptor complexes, it is clear that actin filaments can associate with the slit diaphragm junctional complex via multiple intermediaries (e.g., at the podocyte intercellular junction via CD2ap, ZO-1/Neph1, JAM, etc.) that might provide stable, phosphorylation-independent contacts necessary for maintaining the structural integrity of foot processes and their formed intercellular junctions. In recent work the classical dogma that actin binds stably to classical cadherins at mature epithelial adherens junctions was challenged; it was suggested that cadherin-catenin complexes play a dynamic regulatory role, participating only in weak interactions with the cytoskeleton (40, 41). In a similar fashion, nephrin might play a dynamic regulatory role without necessarily forming stable interactions with the actin cytoskeleton via Nck.
It has been well appreciated that in human glomerular disease proteinuria is invariably associated with foot process effacement. Presumably, in the setting of disease, these integrated processes occur following podocyte injury that results in an inside-out signaling event culminating in effacement and alteration of the intercellular junction. Nephrin phosphorylation also occurred rapidly following induction of foot process effacement in the protamine sulfate model. At first inspection, this observation appears to contradict the model proposed above that Y1191/1208 phosphorylation initiates actin dynamics necessary for junction formation. Indeed, one might argue that because phosphorylation on Y1191/1208 is temporally associated with effacement that this phosphorylation event results in disassembly of the podocyte intercellular junction. However, deletion of Fyn in mouse podocytes was not associated with stabilization of the podocyte intercellular junction; rather, it was associated with failure of appropriate junction formation. Moreover, it is difficult to overlook the established biology of Nck recruitment in other systems in which Nck participates in junction formation. Therefore, while additional investigation is necessary to confirm the hypothesis, it is possible that Y1191/1208 phosphorylation occurs after podocyte injury as the podocyte actin cytoskeleton reorganizes; this might require reinduction of actin polymerization as new, albeit different, podocyte intercellular junctions are created.
Using both biochemical and genetic approaches, previous work demonstrated that Fyn can directly bind and phosphorylate nephrin in the context of the podocyte lipid raft (22, 23, 42). The precise mechanism by which nephrin phosphorylation is initiated remains unresolved. In similar lipid raft–based receptor systems, it has been suggested that ectodomain engagement results in either (a) recruitment of the membrane-associated receptor to the lipid raft, where it is brought into proximity of the resident Src kinase and is tyrosine phosphorylated; or (b) clustering of unique rafts such that raft components are combined, leading to initiation of cellular signaling (reviewed in ref. 24). One or both of these general mechanisms may hold for nephrin since it has been shown that podocin serves as a slit diaphragm lipid raft scaffold that recruits nephrin to the lipid raft (20, 43). However, at least in the artificial HEK 293 cell system, physical clustering of nephrin in a lipid raft does not appear to be required for induction of SFK catalytic activity and nephrin phosphorylation, since addition of the 50A9 monoclonal antibody alone, without a secondary clustering antibody, induced both events. Therefore engagement of the nephrin ectodomain might induce a nephrin conformational change that by a yet-to-be-identified mechanism transduces an SFK-activating signal.
Nephrin is necessary for establishing selective glomerular filtration. In part, this function may be dependent on the 3D structure created by the cis- and trans-junctional interactions of nephrin with other transmembrane components at this site (44, 45). However, given the generally accepted function of coordinated cytoskeletal dynamics in establishing intercellular junctional architecture (36), the role of nephrin in regulating cytoskeletal dynamics may be as important in establishing a filtration barrier as nephrin’s potential for directly creating a physical barrier to the passage of macromolecules at the junction.
Rabbit polyclonal antisera against mouse nephrin (7); mouse podocin (44); and pan-Nck, Nck1, and Nck2 (46) were described previously. Chicken polyclonal anti-podocalyxin was a gift of D. Kershaw (University of Michigan; ref. 47). Commercially distributed antibodies employed included antibodies against Grb2, Fyn, glutathione S-transferase, Grb2, PTP1C, PTP1D, Ras-GAP, c-Src, Lyn, and JAK1 (Santa Cruz Biotechnology Inc.); Src(Y418) (BioSource International); Yes, c-Cbl, PI3K, tensin, Vav, Csk, Itk, and Tek (Upstate USA Inc.); P-tyrosine and α-tubulin (Sigma-Aldrich); Crk (BD Biosciences — Pharmingen); PLCγ (BD Biosciences) and ShcA (BD). A rabbit polyclonal phosphospecific antibody was raised against a HPLC-purified synthetic oligopeptide WGPLpYDEVQM manufactured at the Protein Core of the University of Michigan Medical School. Obtained antiserum was affinity purified commercially by Fabgennix Inc. using the phosphorylated peptide coupled to sepharose beads as described by the manufacturer. This antibody was characterized as described herein.
Plasmid encoding GST-nephrinCD fusion protein, which includes the entire cytoplasmic domain of mouse nephrin was prepared in pGEX4T-1 (Amersham Biosciences) using standard techniques (23). Plasmids encoding the various GST-nephrinCD tyrosine residue point mutants were prepared by standard PCR cloning techniques using GST-nephrinCD plasmid as a template (48). GST-Nck1 and GST-Nck1–SH2 mutants were previously described (29). Recombinant GST fusion proteins were prepared and purified from bacterial lysates as described previously (48). GST-nephrinCD or its mutants were expressed in and purified from TKB1 cells (Strategene). Mammalian plasmids encoding mouse nephrin (7), Fyn (49), human nephrin (gift of K. Tryggvason, Karolinska Institute, Stockholm, Sweden; ref. 21), and Flag-tagged Nck1 and Nck1ΔSH2 (50) were previously described. Mammalian expression plasmids encoding mouse nephrin point mutants Y1191F, Y1208F, and Y1191/1208F were prepared in pcDNA3.1 (Invitrogen Corp.) using standard PCR methods. Restriction digestion and DNA sequencing were used to validate all constructs.
Metabolic orthophosphate labeling of isolated glomerular DRM.
Glomerular DRM fractions were isolated, resuspended in kinase buffer (25 mM HEPES, pH 7.2, 10% glycerol, 100 mM NaCl, 5 mM MgCl2, 5 mM MnCl2, 0.1 mM sodium orthovanadate, and a mixture of protease inhibitors) and pelleted by centrifugation at 16,000 g at 4°C. These pellets were resuspended in kinase buffer containing 25 μM ATP and 5 μCi [32P-γ]ATP (3,000 Ci/mmol) and incubated at 25°C for 15 minutes. Pellets were pelleted and washed once with kinase buffer lacking ATP MgCl2 and MnCl2. Pellets were extracted with RIPA buffer and centrifuged at 16,000 g, and the obtained supernatants were retained for additional processing.
In vitro phosphate labeling.
GST-nephrinCD (1 μg) was incubated with 1 μg recombinant Fyn (Upstate USA Inc.) in kinase buffer containing 25 μM ATP and 5 μCi [32P-γ]ATP (3,000 Ci/mmol) and incubated at 25°C for 15 minutes. Reactions were terminated with SDS loading buffer and boiled for 5 minutes. Samples were separated by reducing SDS-PAGE and transferred to nitrocellulose, and phosphorylated nephrin was detected by autoradiography. The radioactive band was excised and further processed for phosphopeptide mapping.
Phosphopeptide mapping.
Tryptic phosphopeptide 2D mapping was performed as described by Boyle et al. (51). Following phosphorylation of nephrin in vivo or phosphorylation of GST-nephrinCD or its mutants in vitro, proteins were immunoprecipitated, resolved by SDS-PAGE, and transferred to a nitrocellulose membrane. The nephrin band was identified by autoradiography and excised, and the membrane was soaked in 0.5% polyvinylpyrrolidone (PVP-360) in 100 mM acetic acid for 30 minutes at 37°C, then washed extensively with water and 0.05 M NH4HCO3. Samples were digested in sequencing grade trypsin (20 μg in 200 μl of 50 mM NH4HCO3 overnight at 37°C; Pierce Biotechnology). Resulting supernatants were dried, and samples were resolubilized in pH 1.9 buffer containing 2.5% (vol/vol) formic acid (88%) and 7.8% (vol/vol) acetic acid. Aliquots of each sample containing 20,000 cpm were spotted onto 20 × 20 cm thin-layer cellulose plates and separated in the first dimension by electrophoresis for 45 minutes at 1,000 V using buffer containing 2.5% formic acid and 7.8% acetic acid at pH 1.9. After drying, peptides were further separated in the second dimension by ascending chromatography for 8 hours using buffer containing 37.5% (vol/vol) 1-butanol, 25% (vol/vol) pyridine, and 5% (vol/vol) acetic acid. The pattern of tryptic phosphopeptides was visualized by exposing the dried cellulose plates to a PhosphoImager plate (model Storm-860; Amersham Biosciences).
Cell culture.
Transient transfections were carried out in COS7 or SYF cells that were cultured in DMEM supplemented with 10% FCS (Invitrogen Corp.) and 200 U/ml penicillin and streptomycin (Roche Applied Science). Transfections were performed using Fugene-6 (Roche Applied Science) according to the manufacturer’s directions. Cells were treated with 50 μM pervanadate for 20 minutes prior to harvesting cells. HEK 293 cells and their derivatives were grown in Eagle’s minimal essential medium with Earle’s BSS supplemented with 2 mM l-glutamine, 1.0 mM sodium pyruvate, 0.1 mM nonessential amino acids, 1.5 g/l sodium bicarbonate, 10% fetal bovine serum, 100 U/ml penicillin, and 100 μg/ml streptomycin. HEK 293 cells stably expressing human nephrin or the Y1191F, Y1208F, or Y1191/1208F point mutants of nephrin were generated by transfecting HEK 293 cells with corresponding plasmids; following selection in G418 (1 mg/ml), cells were pooled and maintained in selection media. Conditionally immortalized mouse podocytes (gift of K. Endlich, University of Heidelberg, Heidelberg, Germany; ref. 28) were cultured under permissive conditions at 33°C in DMEM containing 10% FCS, 10 U/ml interferon-γ (Roche Diagnostics Corp.), penicillin, and streptomycin. These cells were switched to nonpermissive conditions by culturing in same media deficient of interferon at 37°C. NIH 3T3 cells were cultured on prepared cover slips in DMEM supplemented with 10% fetal bovine serum, 100 U/ml penicillin, and 100 μg/ml streptomycin. Cover slips were treated with 1 M HCl at 50–60°C for 16 hours, cooled, and washed extensively in distilled and double-distilled H2O. Cover slips were washed in ethanol and left to dry between folded sheets of filter paper. Before use, cover slips were treated with 100% ethanol in an open tissue culture disc located in a fume hood and allowed to dry. Cover slips were added to individual wells and coated with fibronectin (Chemicon International) at a concentration of 0.1 μg/ml for 1 hour at 37°C.
Immunoprecipitation and immunoblotting.
These experiments were performed using the antibodies indicated in the figures (23). In general, nephrin was extracted from plasma membranes in RIPA buffer (phosphate-buffered 0.9% NaCl containing 0.1% SDS, 1% NP-40, and 0.5% sodium deoxycholate). For coimmunoprecipitation experiments of endogenous nephrin and Nck, glomeruli were isolated from kidney cortices of male Sprague-Dawley rats (150–200 g) by graded sieving as described previously (52) and lysed by incubation in 1% NP-40; 20 mM HEPES, pH 7.5; 150 mM NaCl; and 100 mM potassium iodide with 1× complete, EDTA-free proteinase inhibitor mixture (Roche Molecular Biochemicals) plus 50 mM NaF and 1 mM Na3VO4 at 4°C for 30 minutes. Detergent-insoluble material was removed by centrifugation (10,000 g for 2 minutes).
Mouse kidney perfusion.
Perfusion of mouse kidneys with protamine sulfate was carried out essentially as described previously (26). Briefly, adult C57BL/6 mice were anesthetized with pentobarbital; mouse core temperature was monitored with a rectal probe, and animals were maintained at 37°C throughout the procedure using a heating pad apparatus. Kidneys were perfused with solutions maintained at 37°C through the left ventricle at a pressure of approximately 70 mmHg and an infusion rate of 10 ml/min (23). Perfusion was carried out with HBSS for 2 minutes followed by perfusion with protamine sulfate (2 mg/ml in HBSS; Sigma-Aldrich) for 15 minutes. For effacement recovery, following perfusion with protamine sulfate, mice were perfused with heparin sulfate (800 μg/ml in HBSS; Sigma-Aldrich) for 15 minutes (26). Kidneys were fixed by perfusion with 3% paraformaldehyde in PBS before further processing for transmission electron microscopy or indirect immunofluorescence microscopy. All animal experiments were approved by the University Committee on the Use and Care of Animals Institutional Review Board at the University of Michigan Medical School. All work was conducted in accord with the principles and procedures outlined in the National Institutes of Health Guidelines for the Care and Use of Experimental Animals.
Indirect immunofluorescence microscopy.
Adult or newborn mouse kidney was fixed in 4% paraformaldehyde and paraffin embedded. Sections (4 μm) were cut, deparaffinized in xylene, and rehydrated through graded alcohols in H2O. Epitope retrieval was achieved by heating sections at 98°C for 2 hours in Retrieve-All-1 (1×; Signet Laboratories Inc.). Sections were cooled to room temperature for 10 minutes, rinsed with water for 1 minute, placed in 1× PBS for 5 minutes, and made permeable by incubating with 1% SDS in PBS for 10 minutes. Sections were blocked for 20 minutes in 10% goat serum prior to overnight incubation of primary antibodies at 4°C. After 3 washes, secondary antibodies were added at room temperature for 60 minutes. Slides were washed and mounted with a cover slip using ProLong Antifade mounting medium (Invitrogen Corp.). Immunofluorescence images were obtained with a Leica DMIRB inverted microscope and an RT slider digital camera (model 2.3.1; Diagnostic Instruments) and collected with SPOT software (version 4.5; Diagnostic Instruments) and prepared for presentation with Adobe Photoshop version 6.0.
Electron microscopy.
Preparation of samples for transmission electron microscopy was performed by standard methods using pieces of diced kidney perfusion fixed in glutaraldehyde/cacodylate buffer. After plastic embedding, 1-μm sections were cut and stained with toluidine blue. Selected samples containing glomeruli were thin-sectioned and examined by transmission electron microscopy (23). Twenty glomeruli from each kidney were examined before representative images were chosen.
Glomerular isolation and flotation gradient preparation.
Mouse glomeruli were isolated by sieving as described previously (23). The average purity of the mouse glomerular preparations was 70%. Glomeruli were resuspended at a concentration of 10,000 glomeruli/ml extraction buffer. DRM fractions were prepared by flotation gradient centrifugation using Optiprep (Nycomed Pharma AS) as described previously (23). Fyn–/– mice (B6;129S-Fyntm1Sor) obtained from Jackson Laboratory (stock no. 002385) and bred and characterized as previously described were employed in glomerular preparations (23).
Purified GST or GST-nephrinCD was bound to glutathione agarose. Beads were incubated with isolated mouse glomerular lysate extracted with RIPA buffer (phosphate-buffered saline with 1% NP-40, 0.5% SDS, and 0.5% sodium deoxycholate). After washing with PBS containing 0.1% Tween-20, 1 mM sodium orthovanadate, and 1 mM sodium fluoride, beads were eluted with reduced glutathione. Eluate was resolved by SDS-PAGE in replicate prior to immunoblotting with the indicated panel of antibodies (see Table Table2). 2).
CD16 chimera Nck recruitment and actin polymerization experiments.
NIH 3T3 cells were transfected with CD16 chimeric constructs bearing GFP, HA, or nephrinCD at the C-terminal extent. Thirty hours following transfection, DMEM medium was removed and replaced with fresh medium containing 1 μg/ml CD16 antibody (clone 3G8, catalog no. IM0813; Beckman Coulter). Cells were maintained on ice for 1 hour for Nck recruitment experiments or at 37°C for actin experiments. At this point, cells were washed twice with PBS, 1 μg/ml rhodamine-conjugated anti-mouse IgG (Pierce Biotechnology) was added to the media, and incubation was continued at 37°C for 20 minutes for recruitment experiment and for 1 hour for actin experiments. Cells were washed 3 times with PBS and fixed with cytoskeleton buffer. The composition of cytoskeleton buffer stock was 10 mM 2-CN-morpholino-ethanesulfonic acid, 138 mM KCl, 3 mM MgCl2, 2 mM EGTA, and sucrose to a final concentration of 0.32 M. On the day of use, 20% paraformaldehyde was added to cytoskeleton buffer stock to achieve a final concentration of 4%. Cover slips were mounted on glass slides using ProLong Gold antifade reagent (Invitrogen Corp.). Samples were analyzed by fluorescence confocal microscopy with an Olympus FV-500 microscope using a ×100 oil immersion objective lens and Fluoroview software (version TIEMPO 4.3; Olympus).
We gratefully acknowledge gifts of reagents from K. Tryggvason (Karolinska Institute), K. Endlich (University of Heidelberg), K. Wary (Texas A&M University System Health Science Center, Houston, Texas, USA), Y.H. Yakura (Tokyo Metropolitan Institute for Neuroscience, Tokyo, Japan), L. Larose (McGill University, Montreal, Quebec, Canada), and D. Kershaw and B. Margolis (University of Michigan). This work was supported by a Merit Review (to L.B. Holzman) from the Department of Veterans Affairs and by an O’Brien Renal Center Grant from the NIH.
Nonstandard abbreviations used: CFP, cyan fluorescent protein; 2D, 2-dimensional; DRM, detergent-resistant membrane; GST, glutathione-S-transferase; NckΔSH2, Nck deleted of its SH2 domain; nephrinCD, nephrin cytoplasmic domain; P-, phosphorylated; SFK, Src family kinase.
Conflict of interest: The authors have declared that no conflict of interest exists.
Citation for this article: J. Clin. Invest. 116:1346–1359 (2006). doi:10.1172/JCI27414.
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