The small nuclear ribonucleoprotein particles (snRNPs) consist of snRNAs (U1, U2, U4/U6, or U5), several specific proteins that are unique to each snRNA, and a set of seven common Sm proteins (B/B′, D1, D2, D3, E, F, and G). The biogenesis of the snRNPs is a complex process that involves both the nucleus and the cytoplasm (for a recent review, see reference
59). The snRNAs, with the exception of U6, are transcribed by RNA polymerase II as precursors that contain additional nucleotides at the 3′ end and a monomethylated m
7GpppG (m
7G) cap structure at the 5′ end. This cap structure is recognized by the nuclear cap binding complex (CBC), a heterodimeric complex composed of two subunits, CBP20 and CBP80, both of which are required for binding to the m
7G cap structure (
30,
31,
35,
36). The adaptor protein PHAX binds both CBC and snRNAs and mediates their interaction with the nuclear export receptor CRM1/Exportin1 (Xpo1) (
49,
57). CRM1, together with RanGTP, exports the newly transcribed snRNAs to the cytoplasm (
9,
13,
29). In vitro, phosphorylation of PHAX is required for the formation of the snRNA export complex but is not necessary for the formation of the precomplex containing snRNAs, CBC, and PHAX but not RanGTP and CRM1 (
49). Following export to the cytoplasm, GTP hydrolysis of Ran and dephosphorylation of PHAX lead to disassembly of the snRNA export complex (
49). Each snRNA then associates with the Sm proteins, which form a seven-membered ring (snRNP core particle) around the Sm site (
34,
59). A properly assembled Sm core is required for cap hypermethylation and 3′-end maturation (
40,
48,
56). Both a properly assembled Sm core and an m
3G cap structure are required for snRNP import into the nucleus (
11,
12,
24,
25,
33,
41). The m
3G cap structure is specifically bound by snurportin1, which then interacts with the nuclear import receptor importin-β and, together with an unidentified import receptor that recognizes the Sm core, mediates the import of the assembled snRNP (
12,
28,
50).
The neuromuscular disease spinal muscular atrophy (SMA) is characterized by degeneration of motor neurons of the spinal cord leading to muscular weakness and atrophy (reviewed in reference
45). Over 98% of SMA patients have mutations or deletions of the survival of motor neurons 1 (
SMN1) gene, and decreased levels of the SMN protein correlate with the phenotypic severity of SMA (
7,
19,
27,
32,
45,
46). The SMN protein is expressed in all tissues of metazoan organisms. SMN is associated with several proteins, including Gemin2 (formerly SIP1) (
39), the DEAD box RNA helicase Gemin3 (
3,
4), Gemin4 (
5,
42), a WD repeat protein, Gemin5 (
23,
43), and Gemin6 (
52) to form large complexes. The SMN complex is found both in the nucleus and in the cytoplasm and appears to be involved in the assembly, restructuring and metabolism of several RNPs, including snRNPs, snoRNPs, and transcriptosomes (
2,
10,
39,
53,
55).
Previous experiments have shown that the SMN complex functions in the cytoplasmic assembly of snRNP core particles. Microinjections of anti-SMN complex antibodies in
Xenopus oocytes inhibit or stimulate snRNP core particle formation (
2,
10), and expression of a dominant-negative mutant of SMN in mammalian cells sequesters Sm proteins and snRNAs in cytoplasmic accumulations (
55). Moreover, the SMN complex is required for the assembly of U1 snRNP cores in
Xenopus laevis egg extracts (
43). SMN binds preferentially and directly to the symmetrical dimethylarginine-modified RG-rich domains of SmD1, SmD3, and SmB (
15,
16). This modification is carried out by the methylosome, a complex containing the methyltransferase JBP1 (PRMT5), and it likely serves to direct the Sm proteins to the SMN complex (
17,
18,
44). Several SMN mutants found in SMA patients are defective in Sm protein binding, suggesting that a defect in these interactions may play a role in the pathogenesis of SMA (
2,
53).
To determine more precisely the role of the SMN complex in snRNP core assembly, we asked at what step the SMN complex interacts with snRNAs and whether the SMN complex is released from the snRNP after Sm core assembly. We show that the SMN complex binds newly exported snRNAs in an RNA-dependent manner and remains associated with the snRNPs during Sm core assembly, m3G cap formation, and snurportin1 binding to the m3G cap structure. These findings indicate that the SMN complex is directly associated with snRNPs during the various steps of their biogenesis in the cytoplasm.